Conservation of cofitness between GFF3883 and GFF1742 in Hydrogenophaga sp. GW460-11-11-14-LB1

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 1.0 GFF1742 Phenylalanine-4-hydroxylase (EC 1.14.16.1) 0.59 1
Acidovorax sp. GW101-3H11 0.75 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.76 Ac3H11_1847 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) low > 79
Variovorax sp. SCN45 0.71 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.77 GFF1960 Phenylalanine-4-hydroxylase (EC 1.14.16.1) low > 127
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 ABZR87_RS04265 phenylalanine 4-monooxygenase low > 80
Ralstonia solanacearum GMI1000 0.52 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 RS_RS16810 phenylalanine 4-monooxygenase low > 80
Ralstonia solanacearum PSI07 0.52 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 RPSI07_RS08280 phenylalanine 4-monooxygenase low > 81
Ralstonia solanacearum UW163 0.52 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 UW163_RS04610 phenylalanine 4-monooxygenase — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 RALBFv3_RS08990 phenylalanine 4-monooxygenase low > 76
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS14825 23S rRNA methyltransferase 0.57 HSERO_RS21390 phenylalanine 4-monooxygenase low > 78
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS13170 23S rRNA methyltransferase 0.54 RR42_RS20365 phenylalanine-4-hydroxylase low > 128
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 QEN71_RS29425 phenylalanine 4-monooxygenase low > 153
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS09125 23S rRNA methyltransferase 0.49 BPHYT_RS19520 phenylalanine 4-monooxygenase low > 109
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.52 Xcc-8004.211.1 Phenylalanine-4-hydroxylase (EC 1.14.16.1) low > 74
Kangiella aquimarina DSM 16071 0.34 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.38 B158DRAFT_1721 Phenylalanine 4-hydroxylase (EC 1.14.16.1) low > 40
Rhodanobacter denitrificans MT42 0.33 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 LRK55_RS08075 phenylalanine 4-monooxygenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.50 LRK54_RS08320 phenylalanine 4-monooxygenase low > 59
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 ABZR86_RS15315 phenylalanine 4-monooxygenase low > 74
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.50 OKGIIK_15065 phhA phenylalanine 4-monooxygenase low > 52
Lysobacter sp. OAE881 0.32 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.51 ABIE51_RS00925 phenylalanine 4-monooxygenase low > 62
Pseudomonas sp. S08-1 0.27 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.36 OH686_21235 phenylalanine-4-hydroxylase low > 80
Pseudomonas stutzeri RCH2 0.27 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.37 Psest_0781 phenylalanine-4-hydroxylase, monomeric form 0.21 39
Shewanella loihica PV-4 0.26 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.35 Shew_1435 phhA phenylalanine 4-monooxygenase (RefSeq) — —
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.36 Pf1N1B4_3566 Phenylalanine-4-hydroxylase (EC 1.14.16.1) low > 87
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_19055 23S rRNA methyltransferase 0.36 AO356_03975 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) low > 104
Shewanella sp. ANA-3 0.24 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.36 Shewana3_2781 phhA phenylalanine 4-monooxygenase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.31 CSW01_18290 phenylalanine 4-monooxygenase low > 62
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_02715 23S rRNA methyltransferase 0.36 AO353_18585 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) low > 101
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.36 Pf6N2E2_2630 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) low > 103
Shewanella oneidensis MR-1 0.24 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.35 SO1666 phhA Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) low > 76
Shewanella amazonensis SB2B 0.24 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.33 Sama_2222 phhA phenylalanine 4-monooxygenase (RefSeq) low > 62
Pseudomonas sp. RS175 0.24 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 PFR28_00802 Phenylalanine-4-hydroxylase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.34 Psyr_3575 Phenylalanine 4-hydroxylase 0.34 9
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.34 Psyr_3575 Phenylalanine 4-hydroxylase low > 86
Pseudomonas fluorescens SBW25 0.23 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 PFLU_RS21870 phenylalanine 4-monooxygenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 PFLU_RS21870 phenylalanine 4-monooxygenase low > 109
Pseudomonas putida KT2440 0.23 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 PP_4490 phenylalanine-4-hydroxylase low > 96
Pseudomonas simiae WCS417 0.23 PS417_20155 23S rRNA methyltransferase 0.36 PS417_19900 phenylalanine 4-monooxygenase low > 88
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.36 PfGW456L13_4394 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) low > 87
Alteromonas macleodii MIT1002 0.20 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 MIT1002_01146 Phenylalanine-4-hydroxylase low > 70
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.35 CA264_01665 phenylalanine 4-monooxygenase low > 74
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.50 CCNA_01684 phenylalanine-4-hydroxylase low > 67
Caulobacter crescentus NA1000 0.11 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.50 CCNA_01684 phenylalanine-4-hydroxylase low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.09 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.49 A4249_RS02830 phenylalanine 4-monooxygenase low > 48

Not shown: 53 genomes with orthologs for GFF3883 only; 2 genomes with orthologs for GFF1742 only