Conservation of cofitness between EX31_RS22280 and EX31_RS08600 in Rahnella sp. WP5

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS22280 7-cyano-7-deazaguanine synthase QueC 1.0 EX31_RS08600 serine-type D-Ala-D-Ala carboxypeptidase 0.56 8
Serratia liquefaciens MT49 0.88 IAI46_05045 7-cyano-7-deazaguanine synthase QueC 0.85 IAI46_01875 serine-type D-Ala-D-Ala carboxypeptidase low > 86
Pantoea sp. MT58 0.83 IAI47_14620 7-cyano-7-deazaguanine synthase QueC 0.78 IAI47_17085 serine-type D-Ala-D-Ala carboxypeptidase low > 76
Escherichia coli ECOR38 0.83 HEPCGN_06910 queC 7-cyano-7-deazaguanine synthase QueC 0.80 HEPCGN_16915 dacB serine-type D-Ala-D-Ala carboxypeptidase low > 87
Pectobacterium carotovorum WPP14 0.83 HER17_RS15815 7-cyano-7-deazaguanine synthase QueC 0.84 HER17_RS18335 serine-type D-Ala-D-Ala carboxypeptidase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_03229 7-cyano-7-deazaguanine synthase 0.79 OHPLBJKB_00518 D-alanyl-D-alanine carboxypeptidase DacB low > 73
Escherichia coli ECOR27 0.83 NOLOHH_01230 queC 7-cyano-7-deazaguanine synthase QueC 0.80 NOLOHH_09840 dacB serine-type D-Ala-D-Ala carboxypeptidase low > 75
Escherichia fergusonii Becca 0.83 EFB2_03613 7-cyano-7-deazaguanine synthase 0.79 EFB2_00641 D-alanyl-D-alanine carboxypeptidase DacB low > 86
Escherichia coli Nissle 1917 0.83 ECOLIN_RS02660 7-cyano-7-deazaguanine synthase QueC 0.79 ECOLIN_RS18325 serine-type D-Ala-D-Ala carboxypeptidase low > 55
Dickeya dianthicola ME23 0.82 DZA65_RS06040 7-cyano-7-deazaguanine synthase QueC 0.82 DZA65_RS03175 serine-type D-Ala-D-Ala carboxypeptidase low > 75
Escherichia coli BW25113 0.82 b0444 ybaX predicted aluminum resistance protein (NCBI) 0.80 b3182 dacB D-alanyl-D-alanine carboxypeptidase (NCBI) low > 76
Dickeya dianthicola 67-19 0.82 HGI48_RS05715 7-cyano-7-deazaguanine synthase QueC 0.82 HGI48_RS03180 serine-type D-Ala-D-Ala carboxypeptidase low > 71
Escherichia coli BL21 0.82 ECD_00396 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis 0.79 ECD_03047 D-alanyl-D-alanine carboxypeptidase low > 61
Dickeya dadantii 3937 0.82 DDA3937_RS05670 7-cyano-7-deazaguanine synthase QueC 0.82 DDA3937_RS03010 serine-type D-Ala-D-Ala carboxypeptidase low > 74
Escherichia coli ECRC62 0.82 BNILDI_22645 queC 7-cyano-7-deazaguanine synthase QueC 0.80 BNILDI_01695 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.70 11
Escherichia coli ECRC102 0.82 NIAGMN_06350 queC 7-cyano-7-deazaguanine synthase QueC 0.79 NIAGMN_15800 dacB serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC100 0.82 OKFHMN_08295 queC 7-cyano-7-deazaguanine synthase QueC 0.79 OKFHMN_18040 dacB serine-type D-Ala-D-Ala carboxypeptidase low > 80
Escherichia coli ECRC98 0.82 JDDGAC_11950 queC 7-cyano-7-deazaguanine synthase QueC 0.79 JDDGAC_21665 dacB serine-type D-Ala-D-Ala carboxypeptidase low > 86
Escherichia coli ECRC99 0.82 KEDOAH_19670 queC 7-cyano-7-deazaguanine synthase QueC 0.79 KEDOAH_10110 dacB serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC101 0.82 MCAODC_27520 queC 7-cyano-7-deazaguanine synthase QueC 0.79 MCAODC_08560 dacB serine-type D-Ala-D-Ala carboxypeptidase low > 87
Enterobacter sp. TBS_079 0.82 MPMX20_01035 7-cyano-7-deazaguanine synthase 0.81 MPMX20_04086 D-alanyl-D-alanine carboxypeptidase DacB low > 85
Klebsiella michiganensis M5al 0.82 BWI76_RS06560 7-cyano-7-deazaguanine synthase QueC 0.80 BWI76_RS25165 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2526 queuosine biosynthesis protein QueC 0.81 EX28DRAFT_3234 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF4360 Queuosine Biosynthesis QueC ATPase 0.80 GFF2924 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Erwinia tracheiphila SCR3 0.80 LU632_RS18310 queC 7-cyano-7-deazaguanine synthase QueC 0.80 LU632_RS21170 dacB serine-type D-Ala-D-Ala carboxypeptidase low > 74
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_1527 Queuosine Biosynthesis QueC ATPase 0.12 Pf1N1B4_3846 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 87
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3734 Queuosine Biosynthesis QueC ATPase 0.12 Pf6N2E2_2344 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 103
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_06875 7-cyano-7-deazaguanine synthase QueC 0.32 CSW01_03320 serine-type D-Ala-D-Ala carboxypeptidase low > 62
Shewanella loihica PV-4 0.68 Shew_2062 exsB protein (RefSeq) 0.26 Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) — —
Shewanella oneidensis MR-1 0.67 SO2503 exsB exsB protein (NCBI ptt file) 0.25 SO2394 dacB penicillin-binding protein 4 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.67 Shewana3_2164 queuosine biosynthesis protein QueC (RefSeq) 0.25 Shewana3_1985 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) low > 73
Phocaeicola vulgatus CL09T03C04 0.48 HMPREF1058_RS15270 7-cyano-7-deazaguanine synthase QueC 0.16 HMPREF1058_RS11060 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 67
Phocaeicola dorei CL03T12C01 0.48 ABI39_RS11300 7-cyano-7-deazaguanine synthase QueC 0.16 ABI39_RS05970 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 72
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS11150 7-cyano-7-deazaguanine synthase QueC 0.11 HMPREF1181_RS01785 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.46 BT1566 putative aluminum resistance protein (NCBI ptt file) 0.12 BT3187 penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.45 BACOVA_04309 protein ExsB 0.11 BACOVA_02892 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 94
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS20880 7-cyano-7-deazaguanine synthase 0.14 HSERO_RS16870 D-alanyl-D-alanine carboxypeptidase low > 78
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS14060 7-cyano-7-deazaguanine synthase QueC 0.14 HMPREF1078_RS17360 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 61
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4838 Queuosine Biosynthesis QueC ATPase 0.12 Ac3H11_670 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 79
Castellaniella sp019104865 MT123 0.39 ABCV34_RS10950 7-cyano-7-deazaguanine synthase QueC 0.12 ABCV34_RS15375 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 48
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_18070 7-cyano-7-deazaguanine synthase 0.13 AO356_02595 D-alanyl-D-alanine carboxypeptidase low > 104
Pseudomonas sp. S08-1 0.29 OH686_19180 queuosine biosynthesis protein QueC 0.13 OH686_03105 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.62 61
Pseudomonas simiae WCS417 0.29 PS417_22400 7-cyano-7-deazaguanine synthase 0.14 PS417_05005 penicillin-binding protein low > 88
Pseudomonas sp. RS175 0.29 PFR28_03403 7-cyano-7-deazaguanine synthase 0.12 PFR28_01057 D-alanyl-D-alanine carboxypeptidase DacC low > 88
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.15 PFLU_RS05075 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 109
Pseudomonas fluorescens SBW25 0.29 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.15 PFLU_RS05075 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 109
Pseudomonas putida KT2440 0.29 PP_1226 pre-queuosine 0 synthase 0.12 PP_2098 D-alanyl-D-alanine carboxypeptidase low > 96
Ralstonia solanacearum UW163 0.28 UW163_RS00625 7-cyano-7-deazaguanine synthase QueC 0.12 UW163_RS01390 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase — —
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS12940 7-cyano-7-deazaguanine synthase QueC 0.12 RALBFv3_RS12220 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 76
Ralstonia solanacearum GMI1000 0.27 RS_RS03715 7-cyano-7-deazaguanine synthase 0.12 RS_RS02925 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 80
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS09000 7-cyano-7-deazaguanine synthase QueC 0.13 ABZR87_RS08110 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 80
Dechlorosoma suillum PS 0.26 Dsui_0549 queuosine biosynthesis protein QueC 0.12 Dsui_0294 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family low > 51
Azospirillum brasilense Sp245 0.25 AZOBR_RS04150 7-cyano-7-deazaguanine synthase 0.08 AZOBR_RS18340 D-alanyl-D-alanine carboxypeptidase low > 97
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_3209 queuosine biosynthesis protein QueC 0.09 Ga0059261_1299 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family low > 68

Not shown: 40 genomes with orthologs for EX31_RS22280 only; 4 genomes with orthologs for EX31_RS08600 only