| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rahnella sp. WP5 | 1.0 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.0 | EX31_RS06070 | | phosphate ABC transporter substrate-binding protein PstS | 0.65 | 10 |
| Serratia liquefaciens MT49 | 0.72 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.87 | IAI46_25175 | | phosphate ABC transporter substrate-binding protein PstS | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.66 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.82 | HER17_RS21675 | | phosphate ABC transporter substrate-binding protein PstS | low | > 75 |
| Dickeya dianthicola 67-19 | 0.65 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.82 | HGI48_RS21560 | | phosphate ABC transporter substrate-binding protein PstS | low | > 71 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.82 | DDA3937_RS21470 | | phosphate ABC transporter substrate-binding protein PstS | low | > 74 |
| Dickeya dianthicola ME23 | 0.64 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.82 | DZA65_RS22540 | | phosphate ABC transporter substrate-binding protein PstS | low | > 75 |
| Enterobacter sp. TBS_079 | 0.61 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | MPMX20_04639 | | Phosphate-binding protein PstS | low | > 85 |
| Enterobacter asburiae PDN3 | 0.61 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.81 | EX28DRAFT_4004 | | phosphate ABC transporter, phosphate-binding protein | — | — |
| Pantoea sp. MT58 | 0.60 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.82 | IAI47_00235 | | phosphate ABC transporter substrate-binding protein PstS | low | > 76 |
| Escherichia coli ECOR38 | 0.60 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | HEPCGN_13590 | pstS | phosphate ABC transporter substrate-binding protein PstS | low | > 87 |
| Escherichia coli Nissle 1917 | 0.60 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | ECOLIN_RS21450 | | phosphate ABC transporter substrate-binding protein PstS | low | > 55 |
| Escherichia coli BW25113 | 0.60 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | 0.81 | b3728 | pstS | phosphate transporter subunit (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.60 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | OHPLBJKB_04325 | | Phosphate-binding protein PstS | low | > 73 |
| Escherichia coli ECRC100 | 0.60 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | OKFHMN_14880 | pstS | phosphate ABC transporter substrate-binding protein PstS | low | > 80 |
| Escherichia coli ECRC101 | 0.60 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | MCAODC_05385 | pstS | phosphate ABC transporter substrate-binding protein PstS | low | > 87 |
| Escherichia coli ECRC99 | 0.60 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | KEDOAH_13270 | pstS | phosphate ABC transporter substrate-binding protein PstS | — | — |
| Escherichia coli ECRC98 | 0.60 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | JDDGAC_18500 | pstS | phosphate ABC transporter substrate-binding protein PstS | low | > 86 |
| Escherichia coli ECRC102 | 0.60 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | NIAGMN_12635 | pstS | phosphate ABC transporter substrate-binding protein PstS | — | — |
| Escherichia coli ECRC62 | 0.59 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | BNILDI_04515 | pstS | phosphate ABC transporter substrate-binding protein PstS | low | > 75 |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | NOLOHH_07010 | pstS | phosphate ABC transporter substrate-binding protein PstS | low | > 75 |
| Escherichia fergusonii Becca | 0.59 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | EFB2_04905 | | Phosphate-binding protein PstS | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.80 | GFF1734 | | Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) | low | > 78 |
| Escherichia coli BL21 | 0.59 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | 0.81 | ECD_03612 | | phosphate ABC transporter periplasmic binding protein | low | > 61 |
| Klebsiella michiganensis M5al | 0.59 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.79 | BWI76_RS00160 | | phosphate ABC transporter substrate-binding protein | — | — |
| Erwinia tracheiphila SCR3 | 0.55 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.82 | LU632_RS24880 | pstS | phosphate ABC transporter substrate-binding protein PstS | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.43 | ABZR86_RS08230 | | phosphate ABC transporter substrate-binding protein PstS | — | — |
| Rhodanobacter denitrificans MT42 | 0.33 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.43 | LRK55_RS00195 | | phosphate ABC transporter substrate-binding protein PstS | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.43 | LRK54_RS00455 | | phosphate ABC transporter substrate-binding protein PstS | — | — |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.53 | ABCV34_RS15585 | | phosphate ABC transporter substrate-binding protein PstS | — | — |
| Rhodanobacter sp. FW510-T8 | 0.32 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.43 | OKGIIK_06855 | pstS | phosphate ABC transporter substrate-binding protein PstS | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_19055 | | 23S rRNA methyltransferase | 0.35 | AO356_26700 | | phosphate ABC transporter substrate-binding protein | low | > 104 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.31 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.52 | Xcc-8004.3359.1 | | Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) | low | > 74 |
| Pseudomonas simiae WCS417 | 0.31 | PS417_20155 | | 23S rRNA methyltransferase | 0.35 | PS417_14270 | | phosphate ABC transporter substrate-binding protein | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.31 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.36 | PFLU_RS16170 | | phosphate ABC transporter substrate-binding protein PstS | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.31 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.36 | PFLU_RS16170 | | phosphate ABC transporter substrate-binding protein PstS | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.31 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.67 | RS_RS07670 | | phosphate ABC transporter substrate-binding protein PstS | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.30 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.49 | Psyr_3106 | | phosphate ABC transporter substrate-binding protein, PhoT family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.30 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.49 | Psyr_3106 | | phosphate ABC transporter substrate-binding protein, PhoT family | low | > 86 |
| Cupriavidus basilensis FW507-4G11 | 0.30 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.63 | RR42_RS13470 | | phosphate ABC transporter substrate-binding protein | low | > 128 |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.68 | RALBFv3_RS02150 | | phosphate ABC transporter substrate-binding protein PstS | low | > 76 |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.68 | UW163_RS15460 | | phosphate ABC transporter substrate-binding protein PstS | — | — |
| Ralstonia solanacearum PSI07 | 0.30 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.68 | RPSI07_RS15295 | | phosphate ABC transporter substrate-binding protein PstS | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.30 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.63 | ABZR87_RS14100 | | phosphate ABC transporter substrate-binding protein PstS | low | > 80 |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | ABIE51_RS07545 | | phosphate ABC transporter substrate-binding protein PstS | low | > 62 |
| Pseudomonas putida KT2440 | 0.29 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.33 | PP_2656 | | phosphate ABC transporter | low | > 96 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS14825 | | 23S rRNA methyltransferase | 0.56 | HSERO_RS06310 | | phosphate ABC transporter substrate-binding protein | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS09125 | | 23S rRNA methyltransferase | 0.64 | BPHYT_RS33405 | | phosphate ABC transporter substrate-binding protein | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.64 | QEN71_RS04820 | | phosphate ABC transporter substrate-binding protein PstS | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.29 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.62 | H281DRAFT_04411 | | phosphate ABC transporter substrate-binding protein, PhoT family | low | > 103 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.52 | GFF62 | | Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.28 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.47 | Ac3H11_456 | | Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) | low | > 79 |
| Variovorax sp. SCN45 | 0.27 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | 0.60 | GFF1092 | | Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1) | low | > 127 |
| Rhodopseudomonas palustris CGA009 | 0.15 | TX73_004885 | | methyltransferase | 0.50 | TX73_024845 | | phosphate ABC transporter substrate-binding protein PstS | low | > 86 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.15 | BT0643 | | RNA methyltransferase (NCBI ptt file) | 0.28 | BT0009 | | phosphate-binding periplasmic protein precursor, putative ABC transporter (NCBI ptt file) | low | > 81 |
| Rhizobium sp. OAE497 | 0.13 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | 0.47 | ABIE40_RS07055 | | phosphate ABC transporter substrate-binding protein PstS | low | > 107 |
| Azospirillum sp. SherDot2 | 0.13 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.51 | MPMX19_06032 | | Phosphate-binding protein PstS | low | > 112 |
| Bifidobacterium breve UCC2003 | 0.10 | BBR_RS16615 | | class I SAM-dependent RNA methyltransferase | 0.13 | BBR_RS19165 | | phosphate ABC transporter substrate-binding protein PstS | low | > 34 |
Not shown: 40 genomes with orthologs for EX31_RS07960 only; 3 genomes with orthologs for EX31_RS06070 only