| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | 1.0 | ECD_02898 | | quorum sensing sensory histidine kinase in two-component regulatory system with QseB | 0.57 | 6 |
| Escherichia coli BW25113 | 1.00 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | 1.00 | b3026 | qseC | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | OHPLBJKB_00676 | | Sensor protein QseC | low | > 73 |
| Escherichia coli ECRC62 | 0.99 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.99 | BNILDI_00860 | qseC | two-component system sensor histidine kinase QseC | low | > 75 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.99 | NOLOHH_10655 | qseC | two-component system sensor histidine kinase QseC | low | > 75 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.99 | ECOLIN_RS17430 | | quorum sensing histidine kinase QseC | low | > 55 |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.98 | NIAGMN_16640 | qseC | two-component system sensor histidine kinase QseC | — | — |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.98 | KEDOAH_09270 | qseC | two-component system sensor histidine kinase QseC | — | — |
| Escherichia coli ECRC100 | 0.99 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.98 | OKFHMN_18875 | qseC | two-component system sensor histidine kinase QseC | low | > 80 |
| Escherichia coli ECRC101 | 0.99 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.98 | MCAODC_09390 | qseC | two-component system sensor histidine kinase QseC | low | > 87 |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.98 | JDDGAC_22510 | qseC | two-component system sensor histidine kinase QseC | low | > 86 |
| Escherichia fergusonii Becca | 0.98 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.99 | EFB2_00787 | | Sensor protein QseC | low | > 86 |
| Escherichia coli ECOR38 | 0.98 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.99 | HEPCGN_17735 | qseC | two-component system sensor histidine kinase QseC | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.85 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.75 | GFF3139 | | Sensory histidine kinase QseC | low | > 78 |
| Enterobacter asburiae PDN3 | 0.80 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.63 | EX28DRAFT_3058 | | Signal transduction histidine kinase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.80 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.63 | MPMX20_03864 | | Sensor protein QseC | low | > 85 |
| Klebsiella michiganensis M5al | 0.79 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.63 | BWI76_RS24340 | | two-component sensor histidine kinase | low | > 92 |
| Dickeya dianthicola ME23 | 0.66 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.45 | DZA65_RS22330 | | two-component system sensor histidine kinase QseC | low | > 75 |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.45 | HGI48_RS21350 | | two-component system sensor histidine kinase QseC | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.52 | HER17_RS21565 | | two-component system sensor histidine kinase QseC | low | > 75 |
| Pantoea sp. MT58 | 0.64 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | IAI47_00335 | | two-component system sensor histidine kinase QseC | low | > 76 |
| Serratia liquefaciens MT49 | 0.63 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.52 | IAI46_21230 | | two-component system sensor histidine kinase QseC | low | > 86 |
| Rahnella sp. WP5 | 0.62 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.49 | EX31_RS03270 | | two-component system sensor histidine kinase QseC | low | > 89 |
| Vibrio cholerae E7946 ATCC 55056 | 0.46 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.16 | CSW01_19590 | | two-component sensor histidine kinase | low | > 62 |
| Shewanella sp. ANA-3 | 0.43 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.17 | Shewana3_1886 | | ATPase domain-containing protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.43 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | 0.17 | SO2105 | | sensor protein YgiY, putative (NCBI ptt file) | low | > 76 |
| Marinobacter adhaerens HP15 | 0.36 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | 0.17 | HP15_3967 | | integral membrane sensor signal transduction histidine kinase | low | > 73 |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.18 | Psest_3477 | | Signal transduction histidine kinase | low | > 67 |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.19 | ABIE51_RS00880 | | ATP-binding protein | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.18 | ABZR86_RS01265 | | ATP-binding protein | — | — |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.19 | LRK55_RS13870 | | ATP-binding protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.35 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.19 | LRK54_RS14150 | | ATP-binding protein | low | > 59 |
| Acinetobacter radioresistens SK82 | 0.34 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.18 | MPMX26_00654 | | Sensor protein QseC | low | > 36 |
| Rhodanobacter sp. FW510-T8 | 0.34 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.16 | OKGIIK_14175 | | Sensor protein QseC | low | > 52 |
| Pseudomonas sp. S08-1 | 0.33 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.21 | OH686_04660 | | hypothetical protein | low | > 80 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.20 | PFLU_RS25080 | | two-component sensor histidine kinase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.20 | PFLU_RS25080 | | two-component sensor histidine kinase | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.20 | Psyr_3512 | | ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.20 | Psyr_3512 | | ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.19 | Pf1N1B4_207 | | Sensor histidine kinase | — | — |
| Pseudomonas sp. RS175 | 0.32 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.19 | PFR28_01031 | | Sensor protein QseC | low | > 88 |
| Dechlorosoma suillum PS | 0.32 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.22 | Dsui_3447 | | signal transduction histidine kinase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_19055 | | 23S rRNA methyltransferase | 0.19 | AO356_27275 | | histidine kinase | low | > 104 |
| Acidovorax sp. GW101-3H11 | 0.31 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.22 | Ac3H11_3945 | | Sensory histidine kinase QseC | low | > 79 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.19 | Pf6N2E2_2396 | | Sensor histidine kinase | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.31 | HSERO_RS14825 | | 23S rRNA methyltransferase | 0.20 | HSERO_RS21980 | | membrane protein | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.31 | BPHYT_RS09125 | | 23S rRNA methyltransferase | 0.20 | BPHYT_RS10855 | | histidine kinase | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.31 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.22 | H281DRAFT_01149 | | two-component system, OmpR family, sensor histidine kinase QseC | low | > 103 |
| Pseudomonas putida KT2440 | 0.30 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.19 | PP_4224 | | Sensor histidine kinase | low | > 96 |
| Pseudomonas fluorescens FW300-N2E3 | 0.30 | AO353_02715 | | 23S rRNA methyltransferase | 0.19 | AO353_23015 | | histidine kinase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.19 | PfGW456L13_2300 | | Sensor histidine kinase | low | > 87 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.30 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.21 | GFF701 | | Sensory histidine kinase QseC | low | > 90 |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.20 | QEN71_RS15175 | | ATP-binding protein | low | > 153 |
| Variovorax sp. SCN45 | 0.28 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | 0.20 | GFF1176 | | Sensory histidine kinase QseC | low | > 127 |
| Agrobacterium fabrum C58 | 0.14 | Atu0735 | | RNA methyltransferase | 0.15 | Atu4018 | | two component sensor kinase | low | > 89 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.13 | A4249_RS08425 | | class I SAM-dependent RNA methyltransferase | 0.16 | A4249_RS11490 | | sensor histidine kinase N-terminal domain-containing protein | low | > 48 |
Not shown: 41 genomes with orthologs for ECD_02630 only; 2 genomes with orthologs for ECD_02898 only