| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | 1.0 | ECD_02523 | | tributyltin-inducible repressor of ygaVP | 0.76 | 8 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | 1.00 | HEPCGN_20180 | ygaV | putative HTH-type transcriptional regulator YgaV | low | > 87 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.98 | NIAGMN_18650 | ygaV | putative HTH-type transcriptional regulator YgaV | — | — |
| Escherichia fergusonii Becca | 1.00 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | 0.99 | EFB2_01263 | | putative HTH-type transcriptional regulator YgaV | low | > 86 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.98 | KEDOAH_07255 | ygaV | putative HTH-type transcriptional regulator YgaV | — | — |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.96 | ECOLIN_RS14870 | | metalloregulator ArsR/SmtB family transcription factor | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.98 | MCAODC_11405 | ygaV | putative HTH-type transcriptional regulator YgaV | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | 1.00 | OHPLBJKB_01065 | | putative HTH-type transcriptional regulator YgaV | low | > 73 |
| Escherichia coli BW25113 | 1.00 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | 1.00 | b2667 | ygaV | predicted DNA-binding transcriptional regulator (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.98 | JDDGAC_24545 | ygaV | putative HTH-type transcriptional regulator YgaV | low | > 86 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | NOLOHH_12710 | ygaV | putative HTH-type transcriptional regulator YgaV | low | > 75 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.98 | OKFHMN_20885 | ygaV | putative HTH-type transcriptional regulator YgaV | low | > 80 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | BNILDI_11270 | ygaV | putative HTH-type transcriptional regulator YgaV | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.93 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.90 | GFF1572 | | Transcriptional regulator, ArsR family | low | > 78 |
| Enterobacter asburiae PDN3 | 0.89 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | 0.80 | EX28DRAFT_2752 | | Predicted transcriptional regulators | low | > 76 |
| Enterobacter sp. TBS_079 | 0.89 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | 0.80 | MPMX20_03547 | | putative HTH-type transcriptional regulator YgaV | low | > 85 |
| Klebsiella michiganensis M5al | 0.86 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.71 | BWI76_RS21995 | | transcriptional regulator | low | > 92 |
| Rahnella sp. WP5 | 0.85 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.61 | EX31_RS21725 | | helix-turn-helix transcriptional regulator | 0.47 | 39 |
| Serratia liquefaciens MT49 | 0.83 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.33 | IAI46_09640 | | winged helix-turn-helix transcriptional regulator | low | > 86 |
| Pantoea sp. MT58 | 0.82 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.59 | IAI47_19710 | | helix-turn-helix transcriptional regulator | 0.74 | 10 |
| Dickeya dadantii 3937 | 0.81 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.29 | DDA3937_RS20270 | | helix-turn-helix transcriptional regulator | low | > 74 |
| Dickeya dianthicola 67-19 | 0.79 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.30 | HGI48_RS00955 | | helix-turn-helix transcriptional regulator | low | > 71 |
| Dickeya dianthicola ME23 | 0.79 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.30 | DZA65_RS01015 | | helix-turn-helix transcriptional regulator | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.78 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | HER17_RS03345 | | metalloregulator ArsR/SmtB family transcription factor | low | > 75 |
| Shewanella sp. ANA-3 | 0.68 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.43 | Shewana3_3141 | | ArsR family transcriptional regulator (RefSeq) | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | CSW01_17420 | | transcriptional regulator | low | > 62 |
| Shewanella oneidensis MR-1 | 0.68 | SO0832 | | conserved hypothetical protein TIGR00046 (NCBI ptt file) | 0.43 | SO3538 | hlyU | transcriptional regulator HlyU (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.66 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.44 | Sama_0920 | | transcriptional regulator HlyU (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.65 | Shew_3224 | | hypothetical protein (RefSeq) | 0.42 | Shew_1095 | | ArsR family transcriptional regulator (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_03054 | | Ribosomal RNA small subunit methyltransferase E | 0.27 | MIT1002_02372 | | Biofilm growth-associated repressor | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.43 | B158DRAFT_0180 | | RNA methyltransferase, RsmE family | 0.33 | B158DRAFT_0345 | | transcriptional regulator, ArsR family | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_08050 | | 16S rRNA methyltransferase | 0.40 | AO353_26620 | | ArsR family transcriptional regulator | low | > 101 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_26545 | | 16S rRNA methyltransferase | 0.39 | PS417_17530 | | ArsR family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.40 | PfGW456L13_3537 | | Transcriptional regulator, ArsR family | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.40 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.40 | Pf1N1B4_4483 | | Transcriptional regulator, ArsR family | — | — |
| Pseudomonas stutzeri RCH2 | 0.40 | Psest_0305 | | RNA methyltransferase, RsmE family | 0.36 | Psest_1782 | | Predicted transcriptional regulators | low | > 67 |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.34 | LRK54_RS07735 | | metalloregulator ArsR/SmtB family transcription factor | low | > 59 |
| Acinetobacter radioresistens SK82 | 0.35 | MPMX26_01001 | | Ribosomal RNA small subunit methyltransferase E | 0.29 | MPMX26_01494 | | Biofilm growth-associated repressor | low | > 36 |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS03930 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.34 | LRK55_RS07465 | | metalloregulator ArsR/SmtB family transcription factor | low | > 63 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS17590 | | 16S rRNA methyltransferase | 0.28 | RR42_RS35445 | | ArsR family transcriptional regulator | low | > 128 |
| Dechlorosoma suillum PS | 0.33 | Dsui_1568 | | RNA methyltransferase, RsmE family | 0.32 | Dsui_1272 | | putative transcriptional regulator | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.33 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.33 | H281DRAFT_02691 | | transcriptional regulator, ArsR family | low | > 103 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_4323 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.35 | Ac3H11_2264 | | Transcriptional regulator, ArsR family | low | > 79 |
| Variovorax sp. SCN45 | 0.30 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | 0.30 | GFF6927 | | Transcriptional regulator, ArsR family | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.43 | GFF3245 | | Transcriptional regulator, ArsR family | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.27 | ABCV34_RS15445 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.33 | ABCV34_RS01430 | | metalloregulator ArsR/SmtB family transcription factor | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.19 | PGA1_c02950 | | RNA methyltransferase-like protein | 0.28 | PGA1_c12380 | | regulatory protein SoxR | low | > 62 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.19 | CA264_05265 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.28 | CA264_11085 | | transcriptional regulator | low | > 74 |
| Dinoroseobacter shibae DFL-12 | 0.18 | Dshi_3099 | | protein of unknown function DUF558 (RefSeq) | 0.32 | Dshi_2812 | | transcriptional regulator, ArsR family (RefSeq) | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.17 | TX73_005910 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.40 | TX73_005240 | | metalloregulator ArsR/SmtB family transcription factor | low | > 86 |
| Rhizobium sp. OAE497 | 0.17 | ABIE40_RS03520 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.38 | ABIE40_RS13515 | | metalloregulator ArsR/SmtB family transcription factor | low | > 107 |
| Bosea sp. OAE506 | 0.16 | ABIE41_RS23100 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | ABIE41_RS10070 | | sulfite-sensing transcriptional repressor BigR | low | > 77 |
| Sinorhizobium meliloti 1021 | 0.16 | SMc00826 | | 16S ribosomal RNA methyltransferase RsmE | 0.34 | SMa1056 | | transcriptional regulator | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.16 | Ga0059261_0807 | | RNA methyltransferase, RsmE family | 0.43 | Ga0059261_0944 | | Predicted transcriptional regulators | — | — |
| Magnetospirillum magneticum AMB-1 | 0.15 | AMB_RS01240 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.47 | AMB_RS14620 | | ArsR family transcriptional regulator | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.13 | A4249_RS00350 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.47 | A4249_RS00235 | | metalloregulator ArsR/SmtB family transcription factor | — | — |
Not shown: 44 genomes with orthologs for ECD_02776 only; 0 genomes with orthologs for ECD_02523 only