Conservation of cofitness between DZA65_RS04530 and DZA65_RS10055 in Dickeya dianthicola ME23

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS04530 LysR family transcriptional regulator 1.0 DZA65_RS10055 histidinol dehydrogenase 0.45 7
Dickeya dianthicola 67-19 0.99 HGI48_RS04610 LysR family transcriptional regulator 0.99 HGI48_RS09745 histidinol dehydrogenase low > 71
Dickeya dadantii 3937 0.95 DDA3937_RS04650 LysR family transcriptional regulator 0.95 DDA3937_RS09735 histidinol dehydrogenase low > 74
Pantoea sp. MT58 0.52 IAI47_17520 LysR family transcriptional regulator 0.77 IAI47_07090 histidinol dehydrogenase low > 76
Variovorax sp. SCN45 0.44 GFF7171 Transcriptional regulator DmlR, LysR family 0.31 GFF5345 Histidinol dehydrogenase (EC 1.1.1.23) — —
Dechlorosoma suillum PS 0.43 Dsui_1892 transcriptional regulator 0.32 Dsui_1411 histidinol dehydrogenase — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS25045 LysR family transcriptional regulator 0.30 BPHYT_RS17710 histidinol dehydrogenase — —
Ralstonia solanacearum PSI07 0.43 RPSI07_RS15095 LysR family transcriptional regulator 0.31 RPSI07_RS10390 histidinol dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS33760 hypothetical protein 0.34 RR42_RS18915 histidinol dehydrogenase — —
Ralstonia solanacearum GMI1000 0.43 RS_RS21935 LysR family transcriptional regulator 0.31 RS_RS14790 histidinol dehydrogenase — —
Acidovorax sp. GW101-3H11 0.42 Ac3H11_636 Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme 0.31 Ac3H11_4724 Histidinol dehydrogenase (EC 1.1.1.23) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF2674 Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme 0.31 GFF1314 Histidinol dehydrogenase (EC 1.1.1.23) — —
Variovorax sp. OAS795 0.42 ABID97_RS29215 LysR family transcriptional regulator 0.32 ABID97_RS23160 histidinol dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS17035 LysR family transcriptional regulator 0.31 RALBFv3_RS06845 histidinol dehydrogenase — —
Ralstonia solanacearum UW163 0.42 UW163_RS18425 LysR family transcriptional regulator 0.31 UW163_RS06770 histidinol dehydrogenase — —
Paraburkholderia graminis OAS925 0.42 ABIE53_005151 LysR family transcriptional activator of dmlA 0.29 ABIE53_003701 histidinol dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS37825 LysR substrate-binding domain-containing protein 0.30 QEN71_RS27865 histidinol dehydrogenase low > 153
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS10340 LysR family transcriptional regulator 0.31 ABZR87_RS02500 histidinol dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_01533 transcriptional regulator, LysR family 0.29 H281DRAFT_05652 histidinol dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_4411 Transcriptional regulator, LysR family 0.34 Pf1N1B4_1066 Histidinol dehydrogenase (EC 1.1.1.23) — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS15205 LysR family transcriptional regulator 0.32 HSERO_RS20345 histidinol dehydrogenase low > 78
Pseudomonas simiae WCS417 0.34 PS417_09420 LysR family transcriptional regulator 0.34 PS417_04420 histidinol dehydrogenase low > 88
Pseudomonas fluorescens SBW25 0.33 PFLU_RS10075 LysR family transcriptional regulator 0.34 PFLU_RS04470 histidinol dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS10075 LysR family transcriptional regulator 0.34 PFLU_RS04470 histidinol dehydrogenase low > 109
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF4227 Putative LysR family transcriptional regulator 0.79 GFF3912 Histidinol dehydrogenase (EC 1.1.1.23) low > 78
Agrobacterium fabrum C58 0.33 Atu3951 LysR family transcriptional regulator 0.33 Atu0537 histidinol dehydrogenase low > 89
Pseudomonas sp. RS175 0.32 PFR28_01512 HTH-type transcriptional regulator DmlR 0.33 PFR28_00187 Histidinol dehydrogenase low > 88
Klebsiella michiganensis M5al 0.32 BWI76_RS10685 LysR family transcriptional regulator 0.79 BWI76_RS18925 histidinol dehydrogenase low > 92
Lysobacter sp. OAE881 0.32 ABIE51_RS06090 LysR family transcriptional regulator 0.48 ABIE51_RS13325 histidinol dehydrogenase low > 62
Pseudomonas stutzeri RCH2 0.32 Psest_1182 Transcriptional regulator 0.34 Psest_3298 histidinol dehydrogenase low > 67
Serratia liquefaciens MT49 0.31 IAI46_21020 LysR family transcriptional regulator 0.79 IAI46_08210 histidinol dehydrogenase low > 86
Rhizobium sp. OAE497 0.31 ABIE40_RS06595 LysR family transcriptional regulator 0.34 ABIE40_RS02725 histidinol dehydrogenase low > 107
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_3594 Putative transcriptional regulator LYSR-type 0.33 PfGW456L13_5000 Histidinol dehydrogenase (EC 1.1.1.23) low > 87
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS18110 LysR family transcriptional regulator 0.51 ABZR86_RS06730 histidinol dehydrogenase low > 74
Escherichia coli ECRC99 0.30 KEDOAH_01480 dmlR DNA-binding transcriptional regulator DmlR 0.80 KEDOAH_03635 hisD Histidinol dehydrogenase — —
Escherichia coli ECRC62 0.30 BNILDI_15935 dmlR DNA-binding transcriptional regulator DmlR 0.80 BNILDI_14740 hisD Histidinol dehydrogenase low > 75
Escherichia coli ECRC101 0.30 MCAODC_18780 dmlR DNA-binding transcriptional regulator DmlR 0.80 MCAODC_20425 hisD Histidinol dehydrogenase low > 87
Escherichia coli ECOR38 0.30 HEPCGN_05020 dmlR DNA-binding transcriptional regulator DmlR 0.80 HEPCGN_03220 hisD Histidinol dehydrogenase low > 87
Escherichia coli BL21 0.30 ECD_01769 transcriptional activator of dmlA 0.80 ECD_01922 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase — —
Escherichia coli ECRC100 0.30 OKFHMN_26630 dmlR DNA-binding transcriptional regulator DmlR 0.80 OKFHMN_24515 hisD Histidinol dehydrogenase low > 80
Escherichia coli ECRC98 0.30 JDDGAC_01205 dmlR DNA-binding transcriptional regulator DmlR 0.80 JDDGAC_28625 hisD Histidinol dehydrogenase — —
Escherichia coli ECOR27 0.30 NOLOHH_17150 dmlR DNA-binding transcriptional regulator DmlR 0.80 NOLOHH_15830 hisD Histidinol dehydrogenase — —
Escherichia coli ECRC102 0.30 NIAGMN_01435 dmlR DNA-binding transcriptional regulator DmlR 0.80 NIAGMN_22460 hisD Histidinol dehydrogenase — —
Rahnella sp. WP5 0.30 EX31_RS18850 LysR family transcriptional regulator 0.82 EX31_RS11440 histidinol dehydrogenase low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_01934 HTH-type transcriptional regulator DmlR 0.79 OHPLBJKB_01680 Histidinol dehydrogenase low > 73
Castellaniella sp019104865 MT123 0.30 ABCV34_RS12145 LysR family transcriptional regulator 0.30 ABCV34_RS11230 histidinol dehydrogenase low > 48
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_2397 transcriptional regulator, LysR family 0.34 Psyr_4133 histidinol dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_2397 transcriptional regulator, LysR family 0.34 Psyr_4133 histidinol dehydrogenase 0.44 41
Escherichia coli BW25113 0.30 b3060 ygiP predicted DNA-binding transcriptional regulator (NCBI) 0.80 b2020 hisD histidinol dehydrogenase (NCBI) low > 76
Escherichia fergusonii Becca 0.30 EFB2_00751 HTH-type transcriptional regulator DmlR 0.80 EFB2_01836 Histidinol dehydrogenase low > 86
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_19070 LysR family transcriptional regulator 0.64 CSW01_05750 histidinol dehydrogenase low > 62
Escherichia coli Nissle 1917 0.30 ECOLIN_RS17670 L-tartrate utilization transcriptional activator TtdR 0.81 ECOLIN_RS11945 histidinol dehydrogenase — —
Azospirillum sp. SherDot2 0.29 MPMX19_04441 HTH-type transcriptional regulator DmlR 0.31 MPMX19_05543 Histidinol dehydrogenase — —
Enterobacter sp. TBS_079 0.29 MPMX20_03495 HTH-type transcriptional regulator DmlR 0.78 MPMX20_03002 Histidinol dehydrogenase low > 85
Enterobacter asburiae PDN3 0.28 EX28DRAFT_1614 Transcriptional regulator 0.79 EX28DRAFT_0539 histidinol dehydrogenase low > 76
Phaeobacter inhibens DSM 17395 0.25 PGA1_c05460 transcriptional regulator, LysR family 0.33 PGA1_c31190 histidinol dehydrogenase HisD — —
Pectobacterium carotovorum WPP14 0.25 HER17_RS18920 LysR family transcriptional regulator 0.83 HER17_RS12230 histidinol dehydrogenase low > 75
Shewanella amazonensis SB2B 0.24 Sama_3218 LysR family transcriptional regulator (RefSeq) 0.56 Sama_1942 hisD histidinol dehydrogenase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.24 MIT1002_01798 D-malate degradation protein R 0.54 MIT1002_02633 Histidinol dehydrogenase low > 70

Not shown: 0 genomes with orthologs for DZA65_RS04530 only; 43 genomes with orthologs for DZA65_RS10055 only