Conservation of cofitness between CSW01_01005 and CSW01_19595 in Vibrio cholerae E7946 ATCC 55056

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 1.0 CSW01_19595 DNA-binding response regulator 0.46 11
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J 0.44 OHPLBJKB_00677 Transcriptional regulatory protein QseB low > 73
Escherichia coli BW25113 0.65 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) 0.45 b3025 qseB DNA-binding response regulator in two-component regulatory system with QseC (NCBI) low > 76
Dickeya dadantii 3937 0.65 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 DDA3937_RS19350 two-component system response regulator PmrA low > 74
Escherichia coli ECRC99 0.65 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 KEDOAH_09265 Transcriptional regulatory protein QseB — —
Escherichia coli Nissle 1917 0.65 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 ECOLIN_RS23805 two-component system response regulator BasR low > 55
Escherichia coli ECOR27 0.65 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 NOLOHH_10660 Transcriptional regulatory protein QseB low > 75
Escherichia fergusonii Becca 0.65 EFB2_00316 Ribosomal RNA large subunit methyltransferase J 0.44 EFB2_00788 Transcriptional regulatory protein QseB low > 86
Escherichia coli ECRC100 0.65 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 OKFHMN_18880 Transcriptional regulatory protein QseB low > 80
Escherichia coli ECRC98 0.65 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 JDDGAC_22515 Transcriptional regulatory protein QseB low > 86
Dickeya dianthicola 67-19 0.65 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 HGI48_RS19450 two-component system response regulator PmrA low > 71
Escherichia coli ECRC101 0.65 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 MCAODC_09395 Transcriptional regulatory protein QseB low > 87
Escherichia coli ECRC62 0.65 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 BNILDI_00855 Transcriptional regulatory protein QseB low > 75
Escherichia coli ECRC102 0.65 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 NIAGMN_16645 Transcriptional regulatory protein QseB — —
Escherichia coli BL21 0.65 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent 0.44 ECD_02897 quorum sensing DNA-binding response regulator in two-component regulatory system with QseC low > 61
Enterobacter asburiae PDN3 0.65 EX28DRAFT_4062 Protein involved in catabolism of external DNA 0.45 EX28DRAFT_3235 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 76
Rahnella sp. WP5 0.65 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.48 EX31_RS08605 two-component system response regulator PmrA low > 89
Dickeya dianthicola ME23 0.65 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 DZA65_RS20570 two-component system response regulator PmrA low > 75
Escherichia coli ECOR38 0.65 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 HEPCGN_17740 Quorum sensing DNA-binding response regulator in two-component regulatory system with QseC low > 87
Enterobacter sp. TBS_079 0.64 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J 0.44 MPMX20_03863 Transcriptional regulatory protein QseB low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF515 Protein involved in catabolism of external DNA 0.45 GFF1469 Transcriptional regulatory protein basR/pmrA low > 78
Klebsiella michiganensis M5al 0.64 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.44 BWI76_RS08795 DNA-binding response regulator low > 92
Serratia liquefaciens MT49 0.63 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.43 IAI46_01870 two-component system response regulator PmrA low > 86
Pectobacterium carotovorum WPP14 0.62 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.42 HER17_RS02000 two-component system response regulator PmrA low > 75
Erwinia tracheiphila SCR3 0.62 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 LU632_RS21175 pmrA two-component system response regulator PmrA low > 74
Shewanella sp. ANA-3 0.49 Shewana3_4038 hypothetical protein (RefSeq) 0.44 Shewana3_1885 two component transcriptional regulator (RefSeq) low > 73
Shewanella oneidensis MR-1 0.48 SO4659 conserved hypothetical protein (NCBI ptt file) 0.44 SO2104 DNA-binding response regulator YgiX, putative (NCBI ptt file) low > 76
Azospirillum sp. SherDot2 0.46 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J 0.40 MPMX19_04133 Transcriptional regulatory protein tctD low > 112
Pseudomonas putida KT2440 0.44 PP_4945 23S rRNA m(6)A2030 methyltransferase 0.49 PP_2713 DNA-binding response regulator low > 96
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 ABZR87_RS22890 response regulator transcription factor low > 80
Pseudomonas stutzeri RCH2 0.42 Psest_0408 Protein involved in catabolism of external DNA 0.50 Psest_3476 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 67
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS10595 competence protein ComJ 0.49 HSERO_RS21985 transcriptional regulator low > 78
Ralstonia solanacearum UW163 0.41 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.44 UW163_RS17155 DNA-binding response regulator — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.44 RALBFv3_RS16415 DNA-binding response regulator low > 76
Paraburkholderia graminis OAS925 0.41 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase 0.47 ABIE53_003418 two-component system response regulator QseB low > 113
Ralstonia solanacearum PSI07 0.41 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.44 RPSI07_RS07290 DNA-binding response regulator low > 81
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 QEN71_RS02475 response regulator low > 153
Ralstonia solanacearum GMI1000 0.40 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.46 RS_RS24590 DNA-binding response regulator low > 80
Pseudomonas sp. S08-1 0.40 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.54 OH686_04665 Two-component system response regulator QseB low > 80
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS06880 competence protein ComJ 0.47 BPHYT_RS16220 transcriptional regulator — —
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS09005 competence protein ComJ 0.44 RR42_RS30345 XRE family transcriptional regulator low > 128
Pseudomonas sp. RS175 0.39 PFR28_05056 Ribosomal RNA large subunit methyltransferase J 0.53 PFR28_02328 Transcriptional regulatory protein QseB low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4772 Protein of unknown function DUF519 0.45 Psyr_3511 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4772 Protein of unknown function DUF519 0.45 Psyr_3511 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1481 Protein involved in catabolism of external DNA 0.52 Pf1N1B4_4454 Two-component system response regulator QseB — —
Castellaniella sp019104865 MT123 0.38 ABCV34_RS03075 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.42 ABCV34_RS11770 response regulator low > 48
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_3679 Protein involved in catabolism of external DNA 0.52 Pf6N2E2_1539 Two-component system response regulator QseB low > 103
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_219 Protein involved in catabolism of external DNA 0.53 PfGW456L13_3169 Two-component system response regulator QseB low > 87
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_12840 lactate dehydrogenase 0.43 AO353_23010 XRE family transcriptional regulator low > 101
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.53 PFLU_RS15245 response regulator low > 109
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_08990 lactate dehydrogenase 0.53 AO356_23845 XRE family transcriptional regulator low > 104
Pseudomonas fluorescens SBW25 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.53 PFLU_RS15245 response regulator low > 109
Pseudomonas simiae WCS417 0.38 PS417_02200 lactate dehydrogenase 0.54 PS417_13595 XRE family transcriptional regulator — —
Alteromonas macleodii MIT1002 0.36 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J 0.46 MIT1002_00810 Transcriptional regulatory protein BasR low > 70
Variovorax sp. OAS795 0.32 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 ABID97_RS14955 response regulator low > 91
Marinobacter adhaerens HP15 0.31 HP15_2563 protein containing DUF519 0.41 HP15_3968 two component transcriptional regulator, winged helix family low > 73
Variovorax sp. SCN45 0.31 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) 0.45 GFF1175 Two-component system response regulator QseB low > 127
Acidovorax sp. GW101-3H11 0.31 Ac3H11_3047 Protein involved in catabolism of external DNA 0.43 Ac3H11_3946 Two-component system response regulator QseB low > 79
Phaeobacter inhibens DSM 17395 0.29 PGA1_c26480 Protein involved in catabolism of external DNA 0.33 PGA1_c14360 cell cycle response regulator low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS02525 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.38 A4249_RS11495 response regulator transcription factor low > 48

Not shown: 21 genomes with orthologs for CSW01_01005 only; 3 genomes with orthologs for CSW01_19595 only