| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00045 | | amino acid ABC transporter permease | 1.0 | CSW01_19480 | | HlyD family type I secretion periplasmic adaptor subunit | 0.44 | 8 |
| Phaeobacter inhibens DSM 17395 | 0.60 | PGA1_65p00120 | | putative amino-acid ABC transporter, permease protein | 0.20 | PGA1_c02430 | | type I secretion membrane fusion protein, HlyD family | — | — |
| Pectobacterium carotovorum WPP14 | 0.48 | HER17_RS01245 | | amino acid ABC transporter permease | 0.38 | HER17_RS05855 | | HlyD family type I secretion periplasmic adaptor subunit | low | > 75 |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS18355 | | amino acid ABC transporter permease | 0.23 | BWI76_RS10025 | | secretion protein HlyD | low | > 92 |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_02250 | tcyL | cystine ABC transporter permease | 0.22 | NIAGMN_06090 | emrA | hemolysin D | — | — |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS10925 | | cystine ABC transporter permease | 0.24 | ECOLIN_RS01695 | | HlyD family type I secretion periplasmic adaptor subunit | — | — |
| Escherichia coli ECOR38 | 0.42 | HEPCGN_04155 | tcyL | cystine ABC transporter permease | 0.22 | HEPCGN_06675 | emrA | hemolysin D | low | > 87 |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_02290 | tcyL | cystine ABC transporter permease | 0.22 | KEDOAH_19930 | emrA | hemolysin D | — | — |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_00390 | tcyL | cystine ABC transporter permease | 0.22 | JDDGAC_11685 | emrA | hemolysin D | low | > 86 |
| Pseudomonas putida KT2440 | 0.42 | PP_0226 | | sulfur compound ABC transporter - permease subunit | 0.34 | PP_0166 | | HlyD family secretion protein | low | > 96 |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_25800 | tcyL | cystine ABC transporter permease | 0.22 | OKFHMN_08040 | emrA | hemolysin D | low | > 80 |
| Escherichia coli ECRC101 | 0.42 | MCAODC_19590 | tcyL | cystine ABC transporter permease | 0.22 | MCAODC_27255 | emrA | hemolysin D | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_1694 | | Cystine ABC transporter, permease protein | 0.36 | Pf1N1B4_522 | | HlyD family secretion protein | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.42 | COO64_RS00805 | tcyL | cystine ABC transporter permease | 0.36 | COO64_RS12360 | | HlyD family type I secretion periplasmic adaptor subunit | low | > 93 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF1694 | | Cystine ABC transporter, permease protein | 0.24 | GFF4153 | | Type I secretion system, membrane fusion protein LapC | low | > 78 |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_11670 | | amino acid ABC transporter permease | 0.36 | AO353_11195 | | hemolysin secretion protein D | low | > 101 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_0629 | | amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | 0.25 | EX28DRAFT_1343 | | type I secretion membrane fusion protein, HlyD family | low | > 76 |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS01210 | | cystine ABC transporter permease | 0.15 | PFLU_RS15325 | | HlyD family type I secretion periplasmic adaptor subunit | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS01210 | | cystine ABC transporter permease | 0.15 | PFLU_RS15325 | | HlyD family type I secretion periplasmic adaptor subunit | low | > 109 |
| Enterobacter sp. TBS_079 | 0.41 | MPMX20_02843 | | L-cystine transport system permease protein YecS | 0.25 | MPMX20_02202 | | Type I secretion system membrane fusion protein PrsE | low | > 85 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_445 | | Cystine ABC transporter, permease protein | 0.37 | PfGW456L13_4432 | | HlyD family secretion protein | low | > 87 |
| Rahnella sp. WP5 | 0.41 | EX31_RS09430 | | cystine ABC transporter permease | 0.25 | EX31_RS19255 | | HlyD family efflux transporter periplasmic adaptor subunit | low | > 89 |
| Pantoea sp. MT58 | 0.40 | IAI47_08180 | | cystine ABC transporter permease | 0.26 | IAI47_06510 | | HlyD family efflux transporter periplasmic adaptor subunit | low | > 76 |
| Pseudomonas sp. BP01 | 0.40 | JOY50_RS18450 | tcyL | cystine ABC transporter permease | 0.34 | JOY50_RS28175 | | HlyD family type I secretion periplasmic adaptor subunit | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_3920 | | Cystine ABC transporter, permease protein | 0.37 | Pf6N2E2_2652 | | HlyD family secretion protein | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.39 | AO356_10240 | | amino acid ABC transporter permease | 0.37 | AO356_04080 | | hemolysin secretion protein D | low | > 104 |
| Pseudomonas sp. DMC3 | 0.39 | GFF4199 | | L-cystine transport system permease protein YecS | 0.36 | GFF2374 | | Type I secretion system membrane fusion protein PrsE | low | > 89 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_01100 | | amino acid ABC transporter permease | 0.15 | PS417_13465 | | hemolysin D | low | > 88 |
| Pseudomonas sp. RS175 | 0.39 | PFR28_04854 | | L-cystine transport system permease protein YecS | 0.37 | PFR28_00781 | | Type I secretion system membrane fusion protein PrsE | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.38 | Psyr_0357 | | Diaminopimelate ABC transporter membrane protein / L-cystine ABC transporter membrane protein | 0.18 | Psyr_0934 | | Type I secretion membrane fusion protein, HlyD | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.38 | Psyr_0357 | | Diaminopimelate ABC transporter membrane protein / L-cystine ABC transporter membrane protein | 0.18 | Psyr_0934 | | Type I secretion membrane fusion protein, HlyD | low | > 86 |
| Pseudomonas sp. S08-1 | 0.38 | OH686_18900 | | L-cystine ABC transporter (wide substrate range), permease protein YecS | 0.37 | OH686_20620 | | Type I secretion membrane fusion protein, HlyD family | low | > 80 |
| Serratia liquefaciens MT49 | 0.37 | IAI46_15765 | | cystine ABC transporter permease | 0.12 | IAI46_08100 | | HlyD family type I secretion periplasmic adaptor subunit | low | > 86 |
| Caulobacter crescentus NA1000 Δfur | 0.35 | CCNA_01507 | | cystine transport system permease protein | 0.14 | CCNA_01061 | | type I secretion adaptor protein RsaE | low | > 67 |
| Caulobacter crescentus NA1000 | 0.35 | CCNA_01507 | | cystine transport system permease protein | 0.14 | CCNA_01061 | | type I secretion adaptor protein RsaE | low | > 66 |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS08555 | | ABC transporter permease | 0.10 | BPHYT_RS19915 | | hemolysin D | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS04400 | | ABC transporter permease | 0.07 | RR42_RS12720 | | hemolysin D | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.33 | HSERO_RS10770 | | amino acid ABC transporter permease | 0.25 | HSERO_RS09005 | | type I secretion protein HlyD | low | > 78 |
| Pseudomonas aeruginosa PA14 | 0.33 | IKLFDK_23880 | | ABC transporter permease | 0.26 | IKLFDK_09155 | | hemolysin D | low | > 101 |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_05073 | | L-cystine transport system permease protein YecS | 0.22 | MPMX19_03373 | | Type I secretion system membrane fusion protein PrsE | low | > 112 |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS18765 | | amino acid ABC transporter permease | 0.30 | ABIE40_RS22050 | | HlyD family type I secretion periplasmic adaptor subunit | low | > 107 |
| Bosea sp. OAE506 | 0.31 | ABIE41_RS10680 | | amino acid ABC transporter permease | 0.14 | ABIE41_RS08105 | | HlyD family type I secretion periplasmic adaptor subunit | low | > 77 |
| Erwinia amylovora T8 | 0.30 | OLJFJH_09285 | | cysteine ABC transporter permease | 0.13 | OLJFJH_04725 | | hemolysin D | low | > 58 |
| Variovorax sp. SCN45 | 0.30 | GFF6404 | | ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) | 0.22 | GFF5852 | | Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC | low | > 127 |
| Azospirillum brasilense Sp245 | 0.29 | AZOBR_RS27070 | | ABC transporter permease | 0.22 | AZOBR_RS18215 | | hypothetical protein | low | > 97 |
| Pseudomonas stutzeri RCH2 | 0.29 | Psest_0017 | | ectoine/hydroxyectoine ABC transporter, permease protein EhuD | 0.35 | Psest_1861 | | type I secretion membrane fusion protein, HlyD family | low | > 67 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.28 | DVU2341 | | amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) | 0.34 | DVU1018 | rtxD | type I secretion membrane fusion protein, HlyD family (TIGR) | low | > 55 |
| Ralstonia solanacearum GMI1000 | 0.27 | RS_RS17085 | | ectoine/hydroxyectoine ABC transporter permease subunit EhuD | 0.21 | RS_RS22840 | | secretion protein HlyD | low | > 80 |
| Rhodospirillum rubrum S1H | 0.26 | Rru_A1296 | | Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) | 0.19 | Rru_B0040 | | Type I secretion membrane fusion protein, HlyD (NCBI) | low | > 58 |
| Xanthobacter sp. DMC5 | 0.25 | GFF3963 | | L-cystine transport system permease protein YecS | 0.13 | GFF199 | | Type I secretion system membrane fusion protein PrsE | — | — |
| Dechlorosoma suillum PS | 0.24 | Dsui_0636 | | amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | 0.14 | Dsui_1775 | | type I secretion membrane fusion protein, HlyD family | low | > 51 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.23 | GFF1638 | | ABC transporter permease protein | 0.23 | GFF2375 | | Type I secretion system, membrane fusion protein LapC | low | > 90 |
Not shown: 24 genomes with orthologs for CSW01_00045 only; 14 genomes with orthologs for CSW01_19480 only