Conservation of cofitness between CSW01_03175 and CSW01_15330 in Vibrio cholerae E7946 ATCC 55056

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03175 penicillin-binding protein 1B 1.0 CSW01_15330 glycine dehydrogenase (decarboxylating) 0.75 8
Serratia liquefaciens MT49 0.49 IAI46_21190 bifunctional glycosyl transferase/transpeptidase 0.58 IAI46_20850 aminomethyl-transferring glycine dehydrogenase low > 87
Pectobacterium carotovorum WPP14 0.48 HER17_RS05600 bifunctional glycosyl transferase/transpeptidase 0.58 HER17_RS17995 aminomethyl-transferring glycine dehydrogenase low > 75
Dickeya dadantii 3937 0.48 DDA3937_RS15915 bifunctional glycosyl transferase/transpeptidase 0.58 DDA3937_RS03255 aminomethyl-transferring glycine dehydrogenase low > 74
Dickeya dianthicola ME23 0.48 DZA65_RS17115 bifunctional glycosyl transferase/transpeptidase 0.58 DZA65_RS03445 aminomethyl-transferring glycine dehydrogenase low > 75
Dickeya dianthicola 67-19 0.48 HGI48_RS16030 bifunctional glycosyl transferase/transpeptidase 0.58 HGI48_RS03400 aminomethyl-transferring glycine dehydrogenase low > 71
Erwinia tracheiphila SCR3 0.46 LU632_RS20060 mrcB bifunctional glycosyl transferase/transpeptidase 0.58 LU632_RS05915 gcvP aminomethyl-transferring glycine dehydrogenase low > 73
Pantoea agglomerans CFBP13505 P0401 0.46 PagCFBP13516_RS15930 mrcB bifunctional glycosyl transferase/transpeptidase 0.59 PagCFBP13516_RS04005 gcvP aminomethyl-transferring glycine dehydrogenase low > 80
Erwinia tracheiphila HP pepo 2.2 0.46 IJEDHG_15080 Penicillin-binding protein 1B 0.58 IJEDHG_03250 gcvP aminomethyl-transferring glycine dehydrogenase low > 61
Pantoea sp. MT58 0.46 IAI47_15615 bifunctional glycosyl transferase/transpeptidase 0.59 IAI47_03775 aminomethyl-transferring glycine dehydrogenase low > 76
Klebsiella pneumoniae MKP103 0.45 KDGMDA_13365 bifunctional glycosyl transferase/transpeptidase 0.59 KDGMDA_04370 aminomethyl-transferring glycine dehydrogenase low > 94
Klebsiella pneumoniae MRSN742743 0.45 GJGHJB_04118 mrcB bifunctional glycosyl transferase/transpeptidase 0.59 GJGHJB_00769 gcvP aminomethyl-transferring glycine dehydrogenase low > 83
Enterobacter sp. TBS_079 0.45 MPMX20_00835 Penicillin-binding protein 1B 0.59 MPMX20_03762 Glycine dehydrogenase (decarboxylating) low > 85
Enterobacter asburiae PDN3 0.45 EX28DRAFT_3738 penicillin-binding protein 1B 0.59 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) low > 76
Escherichia coli BL21 0.45 ECD_00148 fused glycosyl transferase and transpeptidase 0.59 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF83 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.59 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 78
Erwinia amylovora T8 0.45 OLJFJH_00745 bifunctional glycosyl transferase/transpeptidase 0.59 OLJFJH_08785 aminomethyl-transferring glycine dehydrogenase low > 58
Escherichia coli Nissle 1917 0.45 ECOLIN_RS00835 bifunctional glycosyl transferase/transpeptidase 0.59 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase low > 55
Klebsiella michiganensis M5al 0.45 BWI76_RS05120 bifunctional glycosyl transferase/transpeptidase 0.59 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 92
Escherichia coli BW25113 0.45 b0149 mrcB penicillin-binding protein 1b (NCBI) 0.59 b2903 gcvP glycine dehydrogenase (NCBI) low > 76
Escherichia coli ECOR38 0.45 HEPCGN_08275 mrcB bifunctional glycosyl transferase/transpeptidase 0.59 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase low > 88
Rahnella sp. WP5 0.45 EX31_RS03230 bifunctional glycosyl transferase/transpeptidase 0.58 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase low > 89
Escherichia fergusonii Becca 0.45 EFB2_03895 Penicillin-binding protein 1B 0.59 EFB2_00999 Glycine dehydrogenase (decarboxylating) low > 86
Escherichia coli ECRC101 0.45 MCAODC_00840 mrcB bifunctional glycosyl transferase/transpeptidase 0.59 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase low > 87
Escherichia coli ECRC99 0.45 KEDOAH_17830 mrcB bifunctional glycosyl transferase/transpeptidase 0.59 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase — —
Escherichia coli ECRC62 0.45 BNILDI_09000 mrcB bifunctional glycosyl transferase/transpeptidase 0.59 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase low > 75
Escherichia coli ECRC102 0.45 NIAGMN_08175 mrcB bifunctional glycosyl transferase/transpeptidase 0.59 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase low > 80
Escherichia coli ECOR27 0.45 NOLOHH_02670 mrcB bifunctional glycosyl transferase/transpeptidase 0.59 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase low > 75
Escherichia coli ECRC98 0.45 JDDGAC_13920 mrcB bifunctional glycosyl transferase/transpeptidase 0.59 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase low > 87
Escherichia coli ECRC100 0.45 OKFHMN_10325 mrcB bifunctional glycosyl transferase/transpeptidase 0.59 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_03513 Penicillin-binding protein 1B 0.59 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) low > 74
Shewanella amazonensis SB2B 0.43 Sama_2971 peptidoglycan glycosyltransferase (RefSeq) 0.58 Sama_2719 glycine dehydrogenase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.43 SO0633 mrcB penicillin-binding protein 1B (NCBI ptt file) 0.58 SO0781 gcvP glycine cleavage system P protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.43 Shew_3123 penicillin-binding protein 1B (RefSeq) 0.59 Shew_3062 glycine dehydrogenase (RefSeq) low > 60
Shewanella sp. ANA-3 0.43 Shewana3_0623 penicillin-binding protein 1B (RefSeq) 0.58 Shewana3_3499 glycine dehydrogenase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.41 MIT1002_00409 Murein polymerase 0.63 MIT1002_02971 Glycine dehydrogenase [decarboxylating] low > 70
Pseudomonas aeruginosa PA14 0.39 IKLFDK_30125 penicillin-binding protein 1B 0.57 IKLFDK_27405 aminomethyl-transferring glycine dehydrogenase low > 98
Pseudomonas aeruginosa PUPa3 0.39 NPBIFN_04999 mrcB penicillin-binding protein 1B 0.57 NPBIFN_05537 gcvP aminomethyl-transferring glycine dehydrogenase low > 101
Pseudomonas aeruginosa MRSN321 0.39 PFGADD_04922 mrcB penicillin-binding protein 1B 0.57 PFGADD_05461 gcvP aminomethyl-transferring glycine dehydrogenase low > 99
Pseudomonas orientalis W4I3 0.38 QF045_RS26085 penicillin-binding protein 1B 0.57 QF045_RS24485 aminomethyl-transferring glycine dehydrogenase low > 93
Pseudomonas lactucae CFBP13502 0.38 GEMAOFIL_04916 Penicillin-binding protein 1B 0.57 GEMAOFIL_04608 Glycine dehydrogenase (decarboxylating) low > 96
Pseudomonas protegens RBAN4 0.38 FABNJH_26550 mrcB penicillin-binding protein 1B 0.57 FABNJH_30045 gcvP aminomethyl-transferring glycine dehydrogenase — —
Pseudomonas sp. DMC3 0.38 GFF4046 Penicillin-binding protein 1B 0.58 GFF308 Glycine dehydrogenase (decarboxylating) low > 89
Pseudomonas simiae WCS417 0.38 PS417_23825 penicillin-binding protein 0.57 PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 88
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_14475 penicillin-binding protein 1B 0.58 AO353_08720 glycine dehydrogenase low > 101
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2874 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.59 Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 87
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25665 penicillin-binding protein 1B 0.57 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25665 penicillin-binding protein 1B 0.57 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase low > 109
Pseudomonas sp. RS175 0.38 PFR28_03703 Penicillin-binding protein 1B 0.56 PFR28_03383 Glycine dehydrogenase (decarboxylating) low > 88
Pseudomonas sp. SVBP6 0.38 COO64_RS15020 mrcB penicillin-binding protein 1B 0.58 COO64_RS00950 gcvP aminomethyl-transferring glycine dehydrogenase low > 91
Pseudomonas sp. BP01 0.38 JOY50_RS27745 mrcB penicillin-binding protein 1B 0.59 JOY50_RS22405 gcvP aminomethyl-transferring glycine dehydrogenase low > 84
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_16150 penicillin-binding protein 1B 0.56 AO356_18170 glycine dehydrogenase low > 104
Pseudomonas stutzeri RCH2 0.38 Psest_1032 penicillin-binding protein 1B 0.60 Psest_0183 glycine dehydrogenase (decarboxylating) — —
Pseudomonas putida KT2440 0.38 PP_4683 transglycosylase/transpeptidase 0.58 PP_5192 glycine dehydrogenase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0842 Peptidoglycan glycosyltransferase 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0842 Peptidoglycan glycosyltransferase 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit low > 86
Pseudomonas segetis P6 0.37 ACVTMO_RS06300 mrcB penicillin-binding protein 1B 0.59 ACVTMO_RS22225 gcvP aminomethyl-transferring glycine dehydrogenase low > 75
Pseudomonas sp. S08-1 0.37 OH686_08150 penicillin-binding protein 1B 0.60 OH686_11165 glycine dehydrogenase low > 80
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_1535 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.58 PfGW456L13_904 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 87
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_5171 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.56 Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 103
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_0038 penicillin-binding protein 1B 0.59 B158DRAFT_0545 glycine dehydrogenase (decarboxylating) — —
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS12740 penicillin-binding protein 1B 0.56 LRK54_RS00520 aminomethyl-transferring glycine dehydrogenase low > 59
Rhodanobacter denitrificans MT42 0.32 LRK55_RS12445 penicillin-binding protein 1B 0.56 LRK55_RS00260 aminomethyl-transferring glycine dehydrogenase low > 63
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_02185 Penicillin-binding protein 1B 0.55 OKGIIK_06740 gcvP2 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain low > 53
Rhodanobacter sp000427505 FW510-R12 0.31 LRK53_RS15845 penicillin-binding protein 1B 0.54 LRK53_RS09610 aminomethyl-transferring glycine dehydrogenase low > 59
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS19740 penicillin-binding protein 1B 0.57 ABZR86_RS08305 aminomethyl-transferring glycine dehydrogenase low > 74
Lysobacter sp. OAE881 0.28 ABIE51_RS05185 penicillin-binding protein 1B 0.55 ABIE51_RS14345 aminomethyl-transferring glycine dehydrogenase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.1494.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.55 Xcc-8004.3878.1 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 74

Not shown: 3 genomes with orthologs for CSW01_03175 only; 36 genomes with orthologs for CSW01_15330 only