Conservation of cofitness between CSW01_12830 and CSW01_05005 in Vibrio cholerae E7946 ATCC 55056

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12830 RNase adaptor protein RapZ 1.0 CSW01_05005 epimerase 0.60 13
Pantoea agglomerans CFBP13505 P0401 0.61 PagCFBP13505_RS09365 RNase adapter RapZ 0.48 PagCFBP13505_RS00280 TIGR01777 family protein low > 74
Pantoea sp. MT58 0.60 IAI47_17200 RNase adapter RapZ 0.47 IAI47_06305 TIGR01777 family protein low > 76
Dickeya dianthicola 67-19 0.60 HGI48_RS01430 RNase adapter RapZ 0.50 HGI48_RS14375 TIGR01777 family protein low > 71
Dickeya dadantii 3937 0.60 DDA3937_RS01515 RNase adapter RapZ 0.50 DDA3937_RS14405 TIGR01777 family protein low > 74
Pectobacterium carotovorum WPP14 0.60 HER17_RS20075 RNase adapter RapZ 0.49 HER17_RS07050 TIGR01777 family oxidoreductase low > 75
Dickeya dianthicola ME23 0.60 DZA65_RS01495 RNase adapter RapZ 0.50 DZA65_RS15305 TIGR01777 family protein low > 75
Klebsiella michiganensis M5al 0.60 BWI76_RS25280 RNase adaptor protein RapZ 0.46 BWI76_RS20300 epimerase — —
Enterobacter asburiae PDN3 0.60 EX28DRAFT_3259 Predicted P-loop-containing kinase 0.47 EX28DRAFT_0300 TIGR01777 family protein low > 76
Erwinia tracheiphila SCR3 0.60 LU632_RS21295 rapZ RNase adapter RapZ 0.46 LU632_RS07880 TIGR01777 family oxidoreductase low > 73
Rahnella sp. WP5 0.60 EX31_RS12385 RNase adapter RapZ 0.46 EX31_RS19530 TIGR01777 family protein low > 89
Enterobacter sp. TBS_079 0.60 MPMX20_04111 RNase adapter protein RapZ 0.47 MPMX20_03239 Epimerase family protein low > 85
Klebsiella pneumoniae MKP103 0.60 KDGMDA_06095 RNase adapter RapZ 0.46 KDGMDA_27145 epimerase low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.47 GFF1914 Cell division inhibitor low > 78
Escherichia coli ECRC102 0.60 NIAGMN_15685 rapZ RNase adapter RapZ 0.47 NIAGMN_20525 yfcH Epimerase family protein YfcH low > 80
Escherichia coli BW25113 0.60 b3205 yhbJ hypothetical protein (NCBI) 0.47 b2304 yfcH conserved protein with NAD(P)-binding Rossmann-fold domain (NCBI) low > 76
Escherichia coli ECOR38 0.60 HEPCGN_16800 rapZ RNase adapter RapZ 0.47 HEPCGN_21960 yfcH Epimerase family protein YfcH low > 88
Escherichia coli BL21 0.60 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase 0.47 ECD_02229 putative NAD-dependent nucleotide-sugar epimerase low > 61
Escherichia coli ECRC99 0.60 KEDOAH_10225 rapZ RNase adapter RapZ 0.47 KEDOAH_05440 yfcH Epimerase family protein YfcH — —
Escherichia coli ECRC100 0.60 OKFHMN_17925 rapZ RNase adapter RapZ 0.47 OKFHMN_22755 yfcH Epimerase family protein YfcH low > 79
Serratia liquefaciens MT49 0.60 IAI46_22485 RNase adapter RapZ 0.52 IAI46_17780 TIGR01777 family protein low > 87
Escherichia coli ECRC98 0.60 JDDGAC_21550 rapZ RNase adapter RapZ 0.47 JDDGAC_26720 yfcH Epimerase family protein YfcH low > 87
Escherichia fergusonii Becca 0.60 EFB2_00618 RNase adapter protein RapZ 0.47 EFB2_01554 Epimerase family protein low > 86
Escherichia coli ECRC62 0.60 BNILDI_01810 rapZ RNase adapter RapZ 0.47 BNILDI_13295 yfcH Epimerase family protein YfcH low > 75
Escherichia coli ECOR27 0.60 NOLOHH_09725 rapZ RNase adapter RapZ 0.47 NOLOHH_14375 yfcH Epimerase family protein YfcH low > 76
Escherichia coli Nissle 1917 0.60 ECOLIN_RS18440 RNase adapter RapZ 0.47 ECOLIN_RS13370 TIGR01777 family oxidoreductase low > 55
Escherichia coli ECRC101 0.60 MCAODC_08445 rapZ RNase adapter RapZ 0.47 MCAODC_13795 yfcH Epimerase family protein YfcH low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00495 RNase adapter protein RapZ 0.47 OHPLBJKB_01401 Epimerase family protein low > 74
Erwinia amylovora T8 0.59 OLJFJH_07055 RNase adapter RapZ 0.45 OLJFJH_11310 epimerase low > 58
Shewanella amazonensis SB2B 0.57 Sama_3091 hypothetical protein (RefSeq) 0.46 Sama_1488 hypothetical protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.57 MIT1002_00824 glmZ(sRNA)-inactivating NTPase 0.48 MIT1002_01417 Epimerase family protein low > 70
Shewanella oneidensis MR-1 0.56 SO3964 conserved hypothetical protein (NCBI ptt file) 0.44 SO2922 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_0669 hypothetical protein (RefSeq) 0.44 Shewana3_1542 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.55 Shew_3314 hypothetical protein (RefSeq) 0.46 Shew_2400 hypothetical protein (RefSeq) — —
Marinobacter adhaerens HP15 0.49 HP15_2445 protein yhbJ 0.41 HP15_1503 nucleoside-diphosphate sugar epimerase low > 73
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_07050 glmZ(sRNA)-inactivating NTPase 0.35 AO356_16550 NAD-dependent dehydratase low > 104
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.34 Pf6N2E2_5232 Cell division inhibitor low > 103
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.32 Pf1N1B4_2931 Cell division inhibitor — —
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_05195 glmZ(sRNA)-inactivating NTPase 0.36 AO353_14840 NAD-dependent dehydratase low > 101
Pseudomonas orientalis W4I3 0.47 QF045_RS07320 RNase adapter RapZ 0.38 QF045_RS06670 TIGR01777 family oxidoreductase low > 93
Pseudomonas sp. DMC3 0.47 GFF1825 RNase adapter protein RapZ 0.33 GFF4474 Epimerase family protein low > 89
Pseudomonas sp. S08-1 0.47 OH686_08560 RNase adapter protein RapZ 0.38 OH686_17890 Cell division inhibitor (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains low > 80
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.34 PfGW456L13_1594 Cell division inhibitor low > 87
Pseudomonas sp. SVBP6 0.47 COO64_RS04270 rapZ RNase adapter RapZ 0.40 COO64_RS03280 TIGR01777 family oxidoreductase low > 93
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_01072 RNase adapter protein RapZ 0.36 GEMAOFIL_00944 Epimerase family protein low > 96
Pseudomonas sp. RS175 0.47 PFR28_00170 RNase adapter protein RapZ 0.35 PFR28_03644 Epimerase family protein low > 88
Pseudomonas aeruginosa PUPa3 0.46 DQ20_RS56610 rapZ;go_function=ATP RNase adapter RapZ 0.37 DQ20_RS55585 TIGR01777 family oxidoreductase low > 101
Pseudomonas aeruginosa MRSN321 0.46 DY961_RS24150 rapZ;go_function=ATP RNase adapter RapZ 0.37 DY961_RS29110 TIGR01777 family oxidoreductase low > 100
Pseudomonas aeruginosa PA14 0.46 IKLFDK_01755 RNase adapter RapZ 0.36 IKLFDK_00215 epimerase low > 98
Pseudomonas segetis P6 0.46 MPMX49_03861 RNase adapter protein RapZ 0.42 MPMX49_01353 Epimerase family protein low > 75
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS04385 RNase adapter RapZ 0.37 PFLU_RS03740 TIGR01777 family protein low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS04385 RNase adapter RapZ 0.37 PFLU_RS03740 TIGR01777 family protein low > 109
Pseudomonas simiae WCS417 0.46 PS417_04330 glmZ(sRNA)-inactivating NTPase 0.35 PS417_03690 NAD-dependent dehydratase — —
Pseudomonas putida KT2440 0.46 PP_0949 putative ATP-binding protein UPF0042 0.33 PP_0743 conserved protein with NAD(P)-binding Rossmann-fold domain low > 96
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_2077 Predicted P-loop-containing kinase 0.38 B158DRAFT_1338 TIGR01777 family protein low > 40
Pseudomonas sp. BP01 0.45 JOY50_RS11115 rapZ RNase adapter RapZ 0.33 JOY50_RS19540 TIGR01777 family oxidoreductase low > 84
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.40 Psyr_0966 Conserved hypothetical protein YfcH low > 86
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.40 Psyr_0966 Conserved hypothetical protein YfcH low > 86
Pseudomonas stutzeri RCH2 0.44 Psest_3316 Predicted P-loop-containing kinase 0.35 Psest_2394 TIGR01777 family protein low > 67
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS07035 RNase adapter RapZ 0.38 ABZR87_RS21015 TIGR01777 family oxidoreductase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1658.1 hypothetical protein 0.35 Xcc-8004.4939.1 hypothetical protein low > 74
Acinetobacter radioresistens SK82 0.41 MPMX26_00547 RNase adapter protein RapZ 0.29 MPMX26_02400 Epimerase family protein low > 36
Acinetobacter baumannii LAC-4 0.41 RR41_RS16040 RNase adapter RapZ 0.29 RR41_RS14765 TIGR01777 family oxidoreductase low > 55
Desulfovibrio vulgaris Miyazaki F 0.35 DvMF_0424 hypothetical protein (RefSeq) 0.25 DvMF_1459 domain of unknown function DUF1731 (RefSeq) low > 51
Mycobacterium tuberculosis H37Rv 0.33 Rv1421 Conserved protein 0.29 Rv2216 Conserved protein low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.33 DVU1631 conserved hypothetical protein (TIGR) 0.30 DVU2932 conserved hypothetical protein TIGR01777 (TIGR) low > 55

Not shown: 34 genomes with orthologs for CSW01_12830 only; 7 genomes with orthologs for CSW01_05005 only