Conservation of cofitness between CSW01_13810 and CSW01_04820 in Vibrio cholerae E7946 ATCC 55056

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 1.0 CSW01_04820 serine hydroxymethyltransferase 0.96 3
Dickeya dadantii 3937 0.81 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) 0.81 DDA3937_RS15600 serine hydroxymethyltransferase — —
Escherichia fergusonii Becca 0.81 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) 0.79 EFB2_01345 Serine hydroxymethyltransferase — —
Escherichia coli ECOR38 0.81 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) 0.79 HEPCGN_20655 glyA serine hydroxymethyltransferase 0.40 25
Escherichia coli BW25113 0.81 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) 0.79 b2551 glyA serine hydroxymethyltransferase (NCBI) — —
Escherichia coli ECOR27 0.81 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) 0.79 NOLOHH_13185 glyA serine hydroxymethyltransferase low > 76
Escherichia coli ECRC62 0.81 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) 0.79 BNILDI_11985 glyA serine hydroxymethyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) 0.79 OHPLBJKB_01156 Serine hydroxymethyltransferase low > 74
Escherichia coli BL21 0.81 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] 0.79 ECD_02443 serine hydroxymethyltransferase low > 61
Escherichia coli ECRC98 0.81 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) 0.79 JDDGAC_25175 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC100 0.81 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) 0.79 OKFHMN_21510 glyA serine hydroxymethyltransferase low > 79
Escherichia coli ECRC102 0.81 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) 0.79 NIAGMN_19280 glyA serine hydroxymethyltransferase low > 80
Escherichia coli ECRC99 0.81 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) 0.79 KEDOAH_06710 glyA serine hydroxymethyltransferase — —
Escherichia coli Nissle 1917 0.81 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) 0.79 ECOLIN_RS14440 serine hydroxymethyltransferase — —
Escherichia coli ECRC101 0.81 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) 0.79 MCAODC_12040 glyA serine hydroxymethyltransferase — —
Dickeya dianthicola ME23 0.81 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) 0.81 DZA65_RS16775 serine hydroxymethyltransferase — —
Serratia liquefaciens MT49 0.81 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) 0.81 IAI46_19395 serine hydroxymethyltransferase — —
Dickeya dianthicola 67-19 0.81 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) 0.81 HGI48_RS15700 serine hydroxymethyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.79 GFF2447 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Klebsiella pneumoniae MKP103 0.81 KDGMDA_06970 phosphoenolpyruvate carboxykinase (ATP) 0.79 KDGMDA_28355 Serine hydroxymethyltransferase low > 95
Pectobacterium carotovorum WPP14 0.80 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) 0.81 HER17_RS05950 serine hydroxymethyltransferase — —
Enterobacter asburiae PDN3 0.79 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) 0.79 EX28DRAFT_0099 Glycine/serine hydroxymethyltransferase — —
Klebsiella michiganensis M5al 0.79 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) 0.79 BWI76_RS21225 serine hydroxymethyltransferase — —
Enterobacter sp. TBS_079 0.79 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) 0.79 MPMX20_03420 Serine hydroxymethyltransferase — —
Rahnella sp. WP5 0.79 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) 0.80 EX31_RS20585 serine hydroxymethyltransferase — —
Erwinia tracheiphila HP pepo 2.2 0.78 IJEDHG_11970 pckA phosphoenolpyruvate carboxykinase (ATP) 0.80 IJEDHG_02915 Serine hydroxymethyltransferase 1 — —
Erwinia amylovora T8 0.78 OLJFJH_04150 phosphoenolpyruvate carboxykinase (ATP) 0.79 OLJFJH_10340 Serine hydroxymethyltransferase — —
Erwinia tracheiphila SCR3 0.78 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) 0.80 LU632_RS17915 serine hydroxymethyltransferase — —
Pantoea sp. MT58 0.77 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) 0.81 IAI47_04960 serine hydroxymethyltransferase — —
Pantoea agglomerans CFBP13505 P0401 0.77 PagCFBP13505_RS18350 phosphoenolpyruvate carboxykinase (ATP) 0.81 PagCFBP13505_RS14850 serine hydroxymethyltransferase — —
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_2395 phosphoenolpyruvate carboxykinase (ATP) 0.72 B158DRAFT_1908 Glycine/serine hydroxymethyltransferase low > 40
Bacteroides thetaiotaomicron VPI-5482 0.73 BT2790 phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) 0.53 BT0738 serine hydroxymethyltransferase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.72 BACOVA_02011 phosphoenolpyruvate carboxykinase (ATP) 0.53 BACOVA_02446 glycine hydroxymethyltransferase — —
Parabacteroides merdae CL09T00C40 0.72 HMPREF1078_RS07235 phosphoenolpyruvate carboxykinase (ATP) 0.53 HMPREF1078_RS02145 serine hydroxymethyltransferase — —
Bacteroides stercoris CC31F 0.72 HMPREF1181_RS01170 phosphoenolpyruvate carboxykinase (ATP) 0.53 HMPREF1181_RS15010 serine hydroxymethyltransferase — —
Phocaeicola dorei CL03T12C01 0.72 ABI39_RS06685 phosphoenolpyruvate carboxykinase (ATP) 0.54 ABI39_RS17420 serine hydroxymethyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.72 HMPREF1058_RS10065 phosphoenolpyruvate carboxykinase (ATP) 0.54 HMPREF1058_RS03800 serine hydroxymethyltransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.44 CA264_05270 phosphoenolpyruvate carboxykinase (ATP) 0.50 CA264_17045 serine hydroxymethyltransferase — —
Cellulophaga baltica 18 0.43 M666_RS03005 phosphoenolpyruvate carboxykinase (ATP) 0.54 M666_RS14985 serine hydroxymethyltransferase low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.42 Echvi_2957 phosphoenolpyruvate carboxykinase (ATP) 0.51 Echvi_1188 Glycine/serine hydroxymethyltransferase — —
Pedobacter sp. GW460-11-11-14-LB5 0.41 CA265_RS23490 phosphoenolpyruvate carboxykinase (ATP) 0.50 CA265_RS19165 serine hydroxymethyltransferase low > 88
Shewanella amazonensis SB2B 0.38 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) 0.82 Sama_1014 glyA serine hydroxymethyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.37 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) 0.81 Shew_1185 glyA serine hydroxymethyltransferase (RefSeq) 0.35 56
Shewanella sp. ANA-3 0.36 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) 0.83 Shewana3_1094 glyA serine hydroxymethyltransferase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.36 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] 0.73 MIT1002_02702 Serine hydroxymethyltransferase low > 70
Shewanella oneidensis MR-1 0.36 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) 0.83 SO3471 glyA serine hydroxymethyltransferase (NCBI ptt file) low > 76
Marinobacter adhaerens HP15 0.36 HP15_3498 phosphoenolpyruvate carboxykinase (ATP) 0.74 HP15_489 glycine hydroxymethyltransferase — —
Pseudomonas lactucae CFBP13502 0.35 GEMAOFIL_00469 Phosphoenolpyruvate carboxykinase (ATP) 0.74 GEMAOFIL_05008 Serine hydroxymethyltransferase — —
Pseudomonas simiae WCS417 0.34 PS417_01210 hypothetical protein 0.74 PS417_24280 serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.74 Pf1N1B4_2778 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.74 PFLU_RS26195 serine hydroxymethyltransferase — —
Pseudomonas fluorescens SBW25 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.74 PFLU_RS26195 serine hydroxymethyltransferase — —
Pseudomonas sp. RS175 0.34 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) 0.75 PFR28_03786 Serine hydroxymethyltransferase — —
Pseudomonas aeruginosa PA14 0.34 IKLFDK_27515 phosphoenolpyruvate carboxykinase 0.73 IKLFDK_00500 Serine hydroxymethyltransferase 3 — —
Pseudomonas sp. SVBP6 0.33 COO64_RS00660 phosphoenolpyruvate carboxykinase 0.74 COO64_RS02995 glyA serine hydroxymethyltransferase — —
Pseudomonas sp. BP01 0.33 JOY50_RS18315 phosphoenolpyruvate carboxykinase 0.74 JOY50_RS24625 glyA serine hydroxymethyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.75 Psyr_4270 serine hydroxymethyltransferase 0.64 6
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.75 Psyr_4270 serine hydroxymethyltransferase 0.51 60
Pseudomonas sp. DMC3 0.33 GFF4175 Phosphoenolpyruvate carboxykinase (ATP) 0.74 GFF3963 Serine hydroxymethyltransferase — —
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.74 PfGW456L13_1451 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas stutzeri RCH2 0.33 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) 0.74 Psest_3404 Glycine/serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] 0.74 AO353_14020 serine hydroxymethyltransferase — —
Pseudomonas sp. S08-1 0.32 OH686_11060 phosphoenolpyruvate carboxykinase (ATP) 0.74 OH686_16230 Serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.75 Pf6N2E2_5082 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] 0.74 AO356_15725 serine hydroxymethyltransferase — —
Pseudomonas segetis P6 0.32 MPMX49_00777 Phosphoenolpyruvate carboxykinase (ATP) 0.74 MPMX49_03979 Serine hydroxymethyltransferase — —

Not shown: 11 genomes with orthologs for CSW01_13810 only; 31 genomes with orthologs for CSW01_04820 only