| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_03090 | | rRNA (cytidine-2'-O-)-methyltransferase | 1.0 | CSW01_04650 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | 0.73 | 2 |
| Pectobacterium carotovorum WPP14 | 0.65 | HER17_RS19860 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.67 | HER17_RS04385 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | low | > 75 |
| Erwinia amylovora T8 | 0.65 | OLJFJH_02280 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.60 | OLJFJH_00475 | | D-glycero-beta-D-manno-heptose 1 7-bisphosphate 7-phosphatase | — | — |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_17110 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.64 | HEPCGN_07985 | gmhB | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | low | > 88 |
| Escherichia fergusonii Becca | 0.64 | EFB2_00677 | | Ribosomal RNA small subunit methyltransferase I | 0.65 | EFB2_03843 | | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | — | — |
| Escherichia coli Nissle 1917 | 0.64 | ECOLIN_RS18085 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.65 | ECOLIN_RS26745 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Escherichia coli ECRC99 | 0.64 | KEDOAH_09915 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.64 | KEDOAH_18110 | gmhB | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Escherichia coli BW25113 | 0.64 | b3146 | yraL | predicted methyltransferase (NCBI) | 0.64 | b0200 | gmhB | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.64 | MCAODC_08755 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.64 | MCAODC_00560 | gmhB | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Escherichia coli ECRC98 | 0.64 | JDDGAC_21860 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.64 | JDDGAC_13640 | gmhB | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | low | > 87 |
| Escherichia coli ECRC102 | 0.64 | NIAGMN_15995 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.64 | NIAGMN_07895 | gmhB | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | low | > 80 |
| Escherichia coli ECRC100 | 0.64 | OKFHMN_18235 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.64 | OKFHMN_10045 | gmhB | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | 0.68 | 68 |
| Escherichia coli BL21 | 0.64 | ECD_03013 | | 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent | 0.64 | ECD_00199 | | D,D-heptose 1,7-bisphosphate phosphatase | — | — |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS02230 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.61 | LU632_RS19815 | gmhB | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | low | > 74 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_00555 | | Ribosomal RNA small subunit methyltransferase I | 0.64 | OHPLBJKB_03461 | | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.64 | HGI48_RS01610 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.66 | HGI48_RS16910 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Shewanella loihica PV-4 | 0.63 | Shew_0228 | | uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) | 0.71 | Shew_2357 | | D,D-heptose 1,7-bisphosphate phosphatase (RefSeq) | low | > 60 |
| Erwinia tracheiphila HP pepo 2.2 | 0.63 | IJEDHG_06680 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.62 | IJEDHG_15330 | gmhB | D-glycero-beta-D-manno-heptose 1 7-bisphosphate 7-phosphatase | — | — |
| Dickeya dianthicola ME23 | 0.63 | DZA65_RS01685 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.66 | DZA65_RS17985 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | low | > 75 |
| Escherichia coli ECOR27 | 0.63 | NOLOHH_10035 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.64 | NOLOHH_02390 | gmhB | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | low | > 76 |
| Escherichia coli ECRC62 | 0.63 | BNILDI_01495 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.64 | BNILDI_09280 | gmhB | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Pantoea agglomerans CFBP13505 P0401 | 0.63 | PagCFBP13505_RS11450 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.63 | PagCFBP13505_RS13625 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Shewanella oneidensis MR-1 | 0.63 | SO0301 | | hypothetical methyltransferase (NCBI ptt file) | 0.67 | SO2851 | | histidinol phosphatase domain protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.62 | Shewana3_3879 | | hypothetical protein (RefSeq) | 0.68 | Shewana3_1583 | | D,D-heptose 1,7-bisphosphate phosphatase (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.62 | Sama_3353 | | hypothetical protein (RefSeq) | 0.71 | Sama_1535 | | D,D-heptose 1,7-bisphosphate phosphatase (RefSeq) | — | — |
| Enterobacter asburiae PDN3 | 0.61 | EX28DRAFT_3195 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.65 | EX28DRAFT_3788 | | D,D-heptose 1,7-bisphosphate phosphatase | — | — |
| Enterobacter sp. TBS_079 | 0.61 | MPMX20_04050 | | Ribosomal RNA small subunit methyltransferase I | 0.66 | MPMX20_00884 | | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.61 | GFF1521 | | rRNA small subunit methyltransferase I | 0.64 | GFF20 | | D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) | low | > 78 |
| Rahnella sp. WP5 | 0.61 | EX31_RS12550 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.65 | EX31_RS12875 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | low | > 89 |
| Pantoea sp. MT58 | 0.61 | IAI47_02850 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.63 | IAI47_15380 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS24910 | | rRNA (cytidine-2'-O-)-methyltransferase | 0.66 | BWI76_RS05370 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Serratia liquefaciens MT49 | 0.59 | IAI46_22295 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.66 | IAI46_20070 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Klebsiella pneumoniae MKP103 | 0.58 | KDGMDA_05780 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.66 | KDGMDA_13620 | | D-glycero-beta-D-manno-heptose 1 7-bisphosphate 7-phosphatase | low | > 95 |
| Pseudomonas segetis P6 | 0.56 | MPMX49_03819 | | Ribosomal RNA small subunit methyltransferase I | 0.25 | MPMX49_00264 | | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | — | — |
| Pseudomonas sp. SVBP6 | 0.54 | COO64_RS11845 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.25 | COO64_RS02180 | gmhB | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Pseudomonas sp. DMC3 | 0.54 | GFF4428 | | Ribosomal RNA small subunit methyltransferase I | 0.26 | GFF583 | | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.53 | Pf6N2E2_5346 | | rRNA small subunit methyltransferase I | 0.25 | Pf6N2E2_4191 | | D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15) | — | — |
| Pseudomonas lactucae CFBP13502 | 0.53 | GEMAOFIL_01121 | | Ribosomal RNA small subunit methyltransferase I | 0.26 | GEMAOFIL_00216 | | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_17110 | | methyltransferase | 0.25 | AO356_11605 | | histidinol phosphatase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.53 | Psyr_4112 | | Protein of unknown function UPF0011 | 0.24 | Psyr_0010 | | D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.53 | AO353_15290 | | methyltransferase | 0.25 | AO353_10590 | | histidinol phosphatase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.53 | Psyr_4112 | | Protein of unknown function UPF0011 | 0.24 | Psyr_0010 | | D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase | — | — |
| Pseudomonas fluorescens SBW25 | 0.53 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.26 | PFLU_RS00045 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Pseudomonas simiae WCS417 | 0.53 | PS417_04590 | | methyltransferase | 0.26 | PS417_00050 | | histidinol phosphatase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.53 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.26 | PFLU_RS00045 | | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Pseudomonas sp. RS175 | 0.53 | PFR28_03597 | | Ribosomal RNA small subunit methyltransferase I | 0.25 | PFR28_04599 | | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | — | — |
| Pseudomonas stutzeri RCH2 | 0.52 | Psest_3270 | | probable S-adenosylmethionine-dependent methyltransferase, YraL family | 0.26 | Psest_0009 | | histidinol-phosphate phosphatase family domain/HAD-superfamily hydrolase, subfamily IIIA | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_953 | | rRNA small subunit methyltransferase I | 0.27 | Pf1N1B4_1921 | | D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15) | — | — |
| Pseudomonas putida KT2440 | 0.52 | PP_1326 | | 16S rRNA 2'-O-ribose C1402 methyltransferase | 0.26 | PP_0059 | | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | — | — |
| Pseudomonas sp. BP01 | 0.52 | JOY50_RS15165 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.26 | JOY50_RS08285 | gmhB | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | — | — |
| Pseudomonas sp. S08-1 | 0.51 | OH686_08340 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.23 | OH686_12570 | | Histidinol-phosphatase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.51 | PfGW456L13_1643 | | rRNA small subunit methyltransferase I | 0.26 | PfGW456L13_660 | | D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15) | — | — |
| Pseudomonas aeruginosa PA14 | 0.50 | IKLFDK_01980 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.26 | IKLFDK_25530 | | D-glycero-beta-D-manno-heptose 1 7-bisphosphate 7-phosphatase | — | — |
| Methylophilus sp. DMC18 | 0.49 | GFF2450 | | Ribosomal RNA small subunit methyltransferase I | 0.26 | GFF2588 | | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | — | — |
| Dechlorosoma suillum PS | 0.45 | Dsui_0251 | | putative S-adenosylmethionine-dependent methyltransferase, YraL family | 0.29 | Dsui_1201 | | histidinol-phosphate phosphatase family protein | — | — |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS23345 | | 16S rRNA methyltransferase | 0.33 | HSERO_RS22085 | | D,D-heptose 1,7-bisphosphate phosphatase | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS01940 | | 16S rRNA methyltransferase | 0.26 | BPHYT_RS03340 | | D,D-heptose 1,7-bisphosphate phosphatase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.37 | RR42_RS19740 | | 16S rRNA methyltransferase | 0.29 | RR42_RS02815 | | D,D-heptose 1,7-bisphosphate phosphatase | — | — |
| Azospirillum brasilense Sp245 | 0.34 | AZOBR_RS02155 | | 16S rRNA methyltransferase | 0.38 | AZOBR_RS33755 | | D-glycero-D-manno-heptose 1 7-bisphosphate phosphatase | low | > 97 |
Not shown: 44 genomes with orthologs for CSW01_03090 only; 2 genomes with orthologs for CSW01_04650 only