Conservation of cofitness between CSW01_03400 and CSW01_04595 in Vibrio cholerae E7946 ATCC 55056

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03400 tRNA pseudouridine(55) synthase TruB 1.0 CSW01_04595 DUF423 domain-containing protein 0.50 10
Serratia liquefaciens MT49 0.72 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.25 IAI46_20335 DUF423 domain-containing protein low > 86
Dickeya dadantii 3937 0.71 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.31 DDA3937_RS05055 DUF423 domain-containing protein low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.28 HGI48_RS05055 DUF423 domain-containing protein low > 71
Dickeya dianthicola ME23 0.69 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.28 DZA65_RS05395 DUF423 domain-containing protein low > 75
Pectobacterium carotovorum WPP14 0.68 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.29 HER17_RS16410 DUF423 domain-containing protein low > 75
Klebsiella michiganensis M5al 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.26 BWI76_RS22950 membrane protein low > 92
Pantoea sp. MT58 0.67 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.25 IAI47_04030 DUF423 domain-containing protein low > 76
Erwinia amylovora T8 0.67 OLJFJH_07250 tRNA pseudouridine(55) synthase TruB 0.24 OLJFJH_09175 DUF423 domain-containing protein low > 58
Escherichia coli BW25113 0.67 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.27 b2807 ygdD conserved inner membrane protein (NCBI) low > 76
Escherichia coli BL21 0.67 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.27 ECD_02658 UPF0382 family inner membrane protein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.27 OHPLBJKB_00924 hypothetical protein low > 73
Escherichia coli Nissle 1917 0.67 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.27 ECOLIN_RS15645 DUF423 domain-containing protein low > 55
Escherichia coli ECOR38 0.67 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.27 HEPCGN_19380 ygdD DUF423 domain-containing protein low > 87
Escherichia coli ECRC100 0.67 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.27 OKFHMN_20125 ygdD UPF0382 inner membrane protein YgdD low > 80
Escherichia coli ECRC99 0.67 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.27 KEDOAH_08005 ygdD UPF0382 inner membrane protein YgdD — —
Escherichia coli ECRC98 0.67 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.27 JDDGAC_23790 ygdD UPF0382 inner membrane protein YgdD low > 86
Escherichia coli ECRC102 0.67 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.27 NIAGMN_17895 ygdD UPF0382 inner membrane protein YgdD — —
Escherichia coli ECRC101 0.67 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.27 MCAODC_10650 ygdD UPF0382 inner membrane protein YgdD low > 87
Escherichia fergusonii Becca 0.67 EFB2_00657 tRNA pseudouridine synthase B 0.27 EFB2_01110 hypothetical protein low > 86
Escherichia coli ECOR27 0.67 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.27 NOLOHH_12005 ygdD UPF0382 inner membrane protein YgdD low > 75
Escherichia coli ECRC62 0.67 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.27 BNILDI_10510 ygdD UPF0382 inner membrane protein YgdD low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.28 GFF4864 COG2363 low > 78
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.26 EX28DRAFT_2882 Uncharacterized small membrane protein low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_04071 tRNA pseudouridine synthase B 0.27 MPMX20_03670 hypothetical protein low > 85
Rahnella sp. WP5 0.65 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.28 EX31_RS13105 DUF423 domain-containing protein low > 89
Shewanella sp. ANA-3 0.64 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.34 Shewana3_2892 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.64 Shew_2825 tRNA pseudouridine synthase B (RefSeq) 0.41 Shew_2762 hypothetical protein (RefSeq) — —
Shewanella amazonensis SB2B 0.63 Sama_0963 pseudouridylate synthase (RefSeq) 0.34 Sama_2427 hypothetical protein (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0108 tRNA pseudouridine 55 synthase 0.25 B158DRAFT_0677 Uncharacterized small membrane protein low > 40
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.37 Psyr_4742 Protein of unknown function DUF423 — —
Pseudomonas putida KT2440 0.46 PP_4710 tRNA pseudouridine 55 synthase 0.34 PP_5106 conserved inner membrane protein low > 96
Pseudomonas stutzeri RCH2 0.46 Psest_0983 tRNA pseudouridine 55 synthase 0.37 Psest_0265 Uncharacterized small membrane protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.37 Psyr_4742 Protein of unknown function DUF423 low > 86
Pseudomonas sp. DMC3 0.46 GFF4990 tRNA pseudouridine synthase B 0.38 GFF221 hypothetical protein low > 89
Pseudomonas sp. BP01 0.46 JOY50_RS26845 truB tRNA pseudouridine(55) synthase TruB 0.33 JOY50_RS20850 DUF423 domain-containing protein low > 84
Marinobacter adhaerens HP15 0.46 HP15_3065 tRNA pseudouridine synthase B 0.35 HP15_3276 membrane protein containing DUF423 — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.35 PfGW456L13_998 COG2363 low > 87
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_05550 pseudouridine synthase 0.33 AO353_08225 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.32 Pf1N1B4_2329 COG2363 low > 87
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.34 Pf6N2E2_4588 COG2363 low > 103
Pseudomonas sp. RS175 0.45 PFR28_00092 tRNA pseudouridine synthase B 0.33 PFR28_04254 hypothetical protein — —
Pseudomonas sp. S08-1 0.44 OH686_17155 tRNA pseudouridine(55) synthase 0.36 OH686_14275 hypothetical regulator low > 80
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_07400 pseudouridine synthase 0.32 AO356_13365 hypothetical protein low > 104
Pseudomonas sp. SVBP6 0.44 COO64_RS15160 truB tRNA pseudouridine(55) synthase TruB 0.28 COO64_RS12940 DUF423 domain-containing protein low > 93
Pseudomonas fluorescens SBW25 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.38 PFLU_RS28430 DUF423 domain-containing protein low > 109
Pseudomonas simiae WCS417 0.44 PS417_23960 pseudouridine synthase 0.37 PS417_26785 membrane protein — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.38 PFLU_RS28430 DUF423 domain-containing protein low > 109
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS17985 tRNA pseudouridine synthase B 0.38 HSERO_RS06075 membrane protein low > 78
Pseudomonas aeruginosa PA14 0.43 IKLFDK_29890 tRNA pseudouridine(55) synthase TruB 0.38 IKLFDK_23530 DUF423 domain-containing protein low > 101
Acinetobacter radioresistens SK82 0.38 MPMX26_02778 tRNA pseudouridine synthase B 0.25 MPMX26_01109 hypothetical protein low > 36
Rhodanobacter sp000427505 FW510-R12 0.36 LRK53_RS09080 tRNA pseudouridine(55) synthase TruB 0.33 LRK53_RS14060 DUF423 domain-containing protein low > 60
Rhodanobacter denitrificans MT42 0.35 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB 0.27 LRK55_RS14235 DUF423 domain-containing protein low > 63
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB 0.26 OKGIIK_03370 DUF423 domain-containing protein low > 52
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB 0.26 LRK54_RS14520 DUF423 domain-containing protein low > 59
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB 0.31 ABZR86_RS21295 DUF423 domain-containing protein low > 74
Caulobacter crescentus NA1000 0.31 CCNA_00035 tRNA pseudouridine synthase B 0.30 CCNA_01289 hypothetical protein low > 66
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_00035 tRNA pseudouridine synthase B 0.30 CCNA_01289 hypothetical protein low > 67
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_2142 tRNA pseudouridine(55) synthase 0.26 Ga0059261_0742 Uncharacterized small membrane protein low > 68

Not shown: 32 genomes with orthologs for CSW01_03400 only; 8 genomes with orthologs for CSW01_04595 only