Conservation of cofitness between CSW01_14510 and CSW01_03470 in Vibrio cholerae E7946 ATCC 55056

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_14510 oxidoreductase 1.0 CSW01_03470 peptide chain release factor 3 0.77 8
Rahnella sp. WP5 0.49 EX31_RS06850 oxidoreductase 0.86 EX31_RS04095 peptide chain release factor 3 — —
Enterobacter asburiae PDN3 0.49 EX28DRAFT_1619 Predicted dehydrogenases and related proteins 0.87 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Klebsiella michiganensis M5al 0.49 BWI76_RS16330 oxidoreductase 0.87 BWI76_RS04100 peptide chain release factor 3 low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.49 GFF1812 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) 0.86 GFF1035 Peptide chain release factor 3 low > 78
Pantoea sp. MT58 0.48 IAI47_10370 oxidoreductase 0.85 IAI47_03375 peptide chain release factor 3 low > 76
Pantoea agglomerans CFBP13505 P0401 0.48 PagCFBP13505_RS05760 oxidoreductase 0.85 PagCFBP13505_RS16330 peptide chain release factor 3 0.52 60
Escherichia coli ECOR38 0.47 HEPCGN_05955 ydgJ Uncharacterized oxidoreductase YdgJ 0.86 HEPCGN_09285 prfC peptide chain release factor 3 low > 88
Escherichia coli ECRC62 0.47 BNILDI_16880 ydgJ Uncharacterized oxidoreductase YdgJ 0.86 BNILDI_08000 prfC peptide chain release factor 3 low > 75
Escherichia coli ECOR27 0.47 NOLOHH_18090 ydgJ Uncharacterized oxidoreductase YdgJ 0.86 NOLOHH_03600 prfC peptide chain release factor 3 low > 76
Escherichia coli ECRC98 0.47 JDDGAC_02165 ydgJ Uncharacterized oxidoreductase YdgJ 0.86 JDDGAC_14875 prfC peptide chain release factor 3 low > 87
Escherichia coli ECRC101 0.47 MCAODC_17835 ydgJ Uncharacterized oxidoreductase YdgJ 0.86 MCAODC_01795 prfC peptide chain release factor 3 low > 88
Escherichia coli ECRC99 0.47 KEDOAH_00530 ydgJ Uncharacterized oxidoreductase YdgJ 0.86 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia coli ECRC102 0.47 NIAGMN_00490 ydgJ Uncharacterized oxidoreductase YdgJ 0.86 NIAGMN_09130 prfC peptide chain release factor 3 low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_02102 putative oxidoreductase YdgJ 0.86 OHPLBJKB_03687 Peptide chain release factor RF3 low > 74
Escherichia coli ECRC100 0.47 OKFHMN_27575 ydgJ Uncharacterized oxidoreductase YdgJ 0.86 OKFHMN_11280 prfC peptide chain release factor 3 low > 79
Escherichia coli BL21 0.47 ECD_01593 putative oxidoreductase 0.86 ECD_04250 peptide chain release factor RF-3 low > 61
Escherichia coli BW25113 0.47 b1624 b1624 orf, hypothetical protein (VIMSS) 0.86 b4375 prfC peptide chain release factor 3 (NCBI) low > 76
Escherichia coli Nissle 1917 0.47 ECOLIN_RS09060 oxidoreductase 0.86 ECOLIN_RS25110 peptide chain release factor 3 — —
Enterobacter sp. TBS_079 0.47 MPMX20_02014 putative oxidoreductase YdgJ 0.87 MPMX20_00673 Peptide chain release factor RF3 low > 85
Escherichia fergusonii Becca 0.47 EFB2_02368 putative oxidoreductase YdgJ 0.86 EFB2_04072 Peptide chain release factor RF3 low > 86
Dickeya dadantii 3937 0.46 DDA3937_RS10615 oxidoreductase 0.86 DDA3937_RS02445 peptide chain release factor 3 low > 74
Klebsiella pneumoniae MKP103 0.46 KDGMDA_23275 oxidoreductase 0.86 KDGMDA_12370 peptide chain release factor 3 low > 95
Pectobacterium carotovorum WPP14 0.46 HER17_RS10790 oxidoreductase 0.85 HER17_RS19065 peptide chain release factor 3 low > 75
Erwinia amylovora T8 0.46 OLJFJH_14315 oxidoreductase 0.85 OLJFJH_01655 peptide chain release factor 3 low > 58
Dickeya dianthicola ME23 0.46 DZA65_RS11095 oxidoreductase 0.86 DZA65_RS02505 peptide chain release factor 3 low > 75
Dickeya dianthicola 67-19 0.46 HGI48_RS10615 oxidoreductase 0.86 HGI48_RS02400 peptide chain release factor 3 — —
Serratia liquefaciens MT49 0.43 IAI46_11530 oxidoreductase 0.86 IAI46_02875 peptide chain release factor 3 low > 86
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS29190 oxidoreductase 0.51 QEN71_RS17200 peptide chain release factor 3 low > 153
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_02415 Predicted dehydrogenase 0.52 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) low > 103
Alteromonas macleodii MIT1002 0.40 MIT1002_03898 putative oxidoreductase YdgJ 0.82 MIT1002_01192 Peptide chain release factor 3 low > 70
Echinicola vietnamensis KMM 6221, DSM 17526 0.40 Echvi_1123 Predicted dehydrogenases and related proteins 0.49 Echvi_0584 peptide chain release factor 3 low > 79
Variovorax sp. SCN45 0.40 GFF1102 Uncharacterized oxidoreductase YdgJ 0.51 GFF2045 Peptide chain release factor 3 low > 127
Paraburkholderia graminis OAS925 0.39 ABIE53_000234 scyllo-inositol 2-dehydrogenase (NADP+) 0.51 ABIE53_004717 peptide chain release factor 3 low > 113
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.927.1 Nucleoside-diphosphate-sugar epimerases 0.63 Xcc-8004.1590.1 Peptide chain release factor 3 — —
Azospirillum sp. SherDot2 0.38 MPMX19_04063 scyllo-inositol 2-dehydrogenase (NADP(+)) IolW 0.53 MPMX19_01192 Peptide chain release factor 3 — —
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS19310 oxidoreductase 0.51 BPHYT_RS34275 peptide chain release factor 3 low > 109
Pseudomonas aeruginosa PA14 0.37 IKLFDK_27750 dehydrogenase 0.69 IKLFDK_20120 peptide chain release factor 3 low > 100
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS19630 oxidoreductase 0.60 ABZR87_RS23485 peptide chain release factor 3 low > 80
Sphingobium sp. HT1-2 0.35 GFF2029 Oxidoreductase 0.48 GFF3317 Peptide chain release factor 3 low > 95
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS02445 oxidoreductase 0.43 A4249_RS15275 peptide chain release factor 3 low > 48
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS18690 oxidoreductase 0.60 RALBFv3_RS23345 peptide chain release factor 3 low > 76
Ralstonia solanacearum UW163 0.34 UW163_RS20440 oxidoreductase 0.60 UW163_RS16595 peptide chain release factor 3 — —
Parabacteroides merdae CL09T00C40 0.34 HMPREF1078_RS02150 Gfo/Idh/MocA family oxidoreductase 0.49 HMPREF1078_RS04145 peptide chain release factor 3 low > 61
Cellulophaga baltica 18 0.34 M666_RS00210 Gfo/Idh/MocA family oxidoreductase 0.47 M666_RS09230 peptide chain release factor 3 low > 67
Lysobacter sp. OAE881 0.33 ABIE51_RS09990 oxidoreductase 0.66 ABIE51_RS16210 peptide chain release factor 3 — —
Ralstonia solanacearum PSI07 0.33 RPSI07_RS04900 oxidoreductase 0.59 RPSI07_RS07810 peptide chain release factor 3 low > 81
Ralstonia solanacearum GMI1000 0.33 RS_RS22255 oxidoreductase 0.59 RS_RS25080 peptide chain release factor 3 low > 80
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0656 Predicted dehydrogenases and related proteins 0.48 Ga0059261_2044 peptide chain release factor 3 low > 68
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS22425 oxidoreductase 0.46 CA265_RS18435 peptide chain release factor 3 0.45 13
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_3266 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_3266 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas fluorescens SBW25 0.26 PFLU_RS12615 oxidoreductase 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS12615 oxidoreductase 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_21375 oxidoreductase 0.69 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas lactucae CFBP13502 0.25 GEMAOFIL_02657 scyllo-inositol 2-dehydrogenase (NADP(+)) IolW 0.69 GEMAOFIL_01011 Peptide chain release factor RF3 low > 93
Pseudomonas simiae WCS417 0.25 PS417_11880 oxidoreductase 0.69 PS417_04030 peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_23195 oxidoreductase 0.69 AO356_07285 peptide chain release factor 3 — —
Pseudomonas sp. RS175 0.24 PFR28_02419 scyllo-inositol 2-dehydrogenase (NADP(+)) IolW 0.69 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas fluorescens FW300-N2E2 0.23 Pf6N2E2_519 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) 0.69 Pf6N2E2_3327 Peptide chain release factor 3 — —
Azospirillum brasilense Sp245 0.11 AZOBR_RS29845 oxidoreductase 0.54 AZOBR_RS14730 peptide chain release factor 3 — —
Phaeobacter inhibens DSM 17395 0.10 PGA1_78p00130 putative oxidoreductase, GFO/IDH/MOCA family 0.48 PGA1_c10620 peptide chain release factor 3 — —
Magnetospirillum magneticum AMB-1 0.10 AMB_RS00635 gfo/Idh/MocA family oxidoreductase 0.54 AMB_RS01375 peptide chain release factor 3 — —

Not shown: 4 genomes with orthologs for CSW01_14510 only; 48 genomes with orthologs for CSW01_03470 only