Conservation of cofitness between CSW01_00335 and CSW01_03430 in Vibrio cholerae E7946 ATCC 55056

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00335 phosphomethylpyrimidine synthase 1.0 CSW01_03430 U32 family peptidase 0.55 5
Pectobacterium carotovorum WPP14 0.76 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.65 HER17_RS18165 U32 family peptidase low > 75
Rahnella sp. WP5 0.76 EX31_RS16815 phosphomethylpyrimidine synthase ThiC 0.68 EX31_RS08485 U32 family peptidase low > 89
Klebsiella pneumoniae MKP103 0.75 KDGMDA_10040 phosphomethylpyrimidine synthase ThiC 0.66 KDGMDA_05845 U32 family peptidase low > 95
Dickeya dianthicola ME23 0.75 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.66 DZA65_RS03280 U32 family peptidase low > 75
Dickeya dadantii 3937 0.75 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.67 DDA3937_RS03110 U32 family peptidase low > 74
Erwinia tracheiphila HP pepo 2.2 0.75 IJEDHG_10885 thiC phosphomethylpyrimidine synthase ThiC 0.60 IJEDHG_14000 U32 family peptidase low > 61
Erwinia tracheiphila SCR3 0.75 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC 0.60 LU632_RS21010 U32 family peptidase low > 73
Pantoea sp. MT58 0.75 IAI47_18085 phosphomethylpyrimidine synthase ThiC 0.63 IAI47_16970 U32 family peptidase low > 76
Escherichia coli ECOR27 0.75 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC 0.66 NOLOHH_09970 rlhA U32 family peptidase low > 76
Serratia liquefaciens MT49 0.75 IAI46_01320 phosphomethylpyrimidine synthase ThiC 0.66 IAI46_02010 U32 family peptidase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF4198 Thiamin biosynthesis protein ThiC 0.68 GFF1509 FIG139928: Putative protease low > 78
Enterobacter sp. TBS_079 0.75 MPMX20_00217 Phosphomethylpyrimidine synthase 0.64 MPMX20_04063 hypothetical protein low > 85
Escherichia coli ECRC62 0.74 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC 0.67 BNILDI_01560 rlhA U32 family peptidase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_04056 Phosphomethylpyrimidine synthase 0.67 OHPLBJKB_00541 hypothetical protein low > 74
Pantoea agglomerans CFBP13505 P0401 0.74 PagCFBP13505_RS22620 phosphomethylpyrimidine synthase ThiC 0.63 PagCFBP13505_RS09065 U32 family peptidase low > 74
Escherichia coli BW25113 0.74 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.67 b3159 yhbV orf, hypothetical protein (VIMSS) low > 76
Klebsiella michiganensis M5al 0.74 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.65 BWI76_RS24975 U32 family peptidase low > 92
Escherichia coli ECRC98 0.74 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC 0.67 JDDGAC_21795 rlhA U32 family peptidase low > 87
Escherichia coli ECRC101 0.74 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC 0.67 MCAODC_08690 rlhA U32 family peptidase low > 87
Escherichia coli ECRC102 0.74 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC 0.67 NIAGMN_15930 rlhA U32 family peptidase low > 80
Escherichia coli BL21 0.74 ECD_03871 phosphomethylpyrimidine synthase 0.67 ECD_03026 U32 peptidase family protein low > 61
Dickeya dianthicola 67-19 0.74 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.67 HGI48_RS03285 U32 family peptidase low > 71
Escherichia coli ECRC100 0.74 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC 0.67 OKFHMN_18170 rlhA U32 family peptidase low > 79
Escherichia coli ECRC99 0.74 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC 0.67 KEDOAH_09980 rlhA U32 family peptidase — —
Escherichia coli Nissle 1917 0.74 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC 0.67 ECOLIN_RS18145 U32 family peptidase low > 55
Enterobacter asburiae PDN3 0.74 EX28DRAFT_4536 phosphomethylpyrimidine synthase 0.65 EX28DRAFT_3208 Collagenase and related proteases low > 76
Escherichia coli ECOR38 0.74 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC 0.67 HEPCGN_17045 rlhA U32 family peptidase low > 88
Escherichia fergusonii Becca 0.74 EFB2_04617 Phosphomethylpyrimidine synthase 0.67 EFB2_00664 hypothetical protein low > 86
Shewanella loihica PV-4 0.74 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) 0.46 Shew_2788 peptidase U32 (RefSeq) low > 60
Shewanella amazonensis SB2B 0.72 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) 0.41 Sama_0997 peptidase U32 (RefSeq) low > 62
Shewanella oneidensis MR-1 0.71 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) 0.44 SO1248 hypothetical peptidase (NCBI ptt file) low > 76
Pseudomonas aeruginosa MRSN321 0.71 DY961_RS10660 thiC;go_function=iron-sulfur phosphomethylpyrimidine synthase ThiC 0.44 DY961_RS13310 U32 family peptidase low > 100
Pseudomonas aeruginosa PUPa3 0.71 DQ20_RS51400 thiC;go_function=iron-sulfur phosphomethylpyrimidine synthase ThiC 0.43 DQ20_RS48615 U32 family peptidase low > 101
Pseudomonas aeruginosa PA14 0.71 IKLFDK_28675 phosphomethylpyrimidine synthase ThiC 0.44 IKLFDK_20170 U32 family peptidase low > 98
Shewanella sp. ANA-3 0.71 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) 0.44 Shewana3_1064 peptidase U32 (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_08810 thiamine biosynthesis protein ThiC 0.45 AO356_25165 protease low > 104
Pseudomonas sp. RS175 0.69 PFR28_05091 Phosphomethylpyrimidine synthase 0.46 PFR28_02213 hypothetical protein low > 88
Pseudomonas stutzeri RCH2 0.69 Psest_0477 thiamine biosynthesis protein ThiC 0.44 Psest_0836 Collagenase and related proteases low > 67
Pseudomonas sp. SVBP6 0.69 COO64_RS17755 thiC phosphomethylpyrimidine synthase ThiC 0.47 COO64_RS14195 U32 family peptidase low > 93
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.45 Pf6N2E2_722 FIG139928: Putative protease low > 103
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.44 Pf1N1B4_5745 FIG139928: Putative protease low > 87
Dechlorosoma suillum PS 0.69 Dsui_0422 thiamine biosynthesis protein ThiC 0.38 Dsui_0963 collagenase-like protease — —
Pseudomonas lactucae CFBP13502 0.69 GEMAOFIL_00708 Phosphomethylpyrimidine synthase 0.47 GEMAOFIL_03432 hypothetical protein low > 96
Pseudomonas simiae WCS417 0.69 PS417_02355 thiamine biosynthesis protein ThiC 0.46 PS417_15750 protease low > 88
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_13010 thiamine biosynthesis protein ThiC 0.43 AO353_22055 protease low > 101
Castellaniella sp019104865 MT123 0.68 ABCV34_RS10825 phosphomethylpyrimidine synthase ThiC 0.38 ABCV34_RS06415 U32 family peptidase low > 48
Ralstonia solanacearum GMI1000 0.65 RS_RS00555 phosphomethylpyrimidine synthase 0.36 RS_RS21790 U32 family peptidase low > 80
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS01290 thiamine biosynthesis protein ThiC 0.34 RR42_RS08780 protease low > 128
Ralstonia solanacearum UW163 0.65 UW163_RS03640 phosphomethylpyrimidine synthase ThiC 0.37 UW163_RS18055 U32 family peptidase — —
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS09940 phosphomethylpyrimidine synthase ThiC 0.37 RALBFv3_RS16700 U32 family peptidase low > 76
Ralstonia solanacearum PSI07 0.65 RPSI07_RS23420 phosphomethylpyrimidine synthase ThiC 0.35 RPSI07_RS06745 U32 family peptidase low > 81
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_0295 hydroxymethylpyrimidine synthase 0.39 B158DRAFT_2374 Collagenase and related proteases low > 40
Acidovorax sp. GW101-3H11 0.61 Ac3H11_2027 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.38 Ac3H11_4295 FIG139928: Putative protease low > 79
Azospirillum brasilense Sp245 0.61 AZOBR_RS07940 phosphomethylpyrimidine synthase 0.21 AZOBR_RS28240 protease low > 97
Azospirillum sp. SherDot2 0.59 MPMX19_00336 Phosphomethylpyrimidine synthase 0.24 MPMX19_03050 hypothetical protein low > 112
Rhodospirillum rubrum S1H 0.56 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) 0.23 Rru_A2524 Peptidase U32 (NCBI) low > 58

Not shown: 55 genomes with orthologs for CSW01_00335 only; 0 genomes with orthologs for CSW01_03430 only