| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_06415 | | MBL fold metallo-hydrolase | 1.0 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.49 | 20 |
| Marinobacter adhaerens HP15 | 0.62 | HP15_1191 | | metallo-beta-lactamase family protein | 0.63 | HP15_332 | | transcriptional regulator, TraR/DksA family | — | — |
| Shewanella oneidensis MR-1 | 0.61 | SO3054 | | metallo-beta-lactamase family protein (NCBI ptt file) | 0.83 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | — | — |
| Klebsiella pneumoniae MKP103 | 0.61 | KDGMDA_18065 | | Hydroxyacylglutathione hydrolase GloC | 0.86 | KDGMDA_13270 | | RNA polymerase-binding protein DksA | low | > 95 |
| Shewanella sp. ANA-3 | 0.61 | Shewana3_1493 | | beta-lactamase domain-containing protein (RefSeq) | 0.82 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 73 |
| Escherichia coli ECOR38 | 0.60 | HEPCGN_23135 | gloC | hydroxyacylglutathione hydrolase GloC | 0.86 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | low | > 88 |
| Shewanella loihica PV-4 | 0.60 | Shew_2269 | | beta-lactamase domain-containing protein (RefSeq) | 0.83 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | — | — |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS09865 | | MBL fold hydrolase | 0.84 | BWI76_RS05015 | | transcriptional regulator | low | > 92 |
| Escherichia coli ECRC100 | 0.59 | OKFHMN_05390 | gloC | hydroxyacylglutathione hydrolase GloC | 0.86 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | low | > 79 |
| Escherichia coli ECRC101 | 0.59 | MCAODC_24780 | gloC | hydroxyacylglutathione hydrolase GloC | 0.86 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | low | > 87 |
| Escherichia coli ECRC102 | 0.59 | NIAGMN_03110 | gloC | hydroxyacylglutathione hydrolase GloC | 0.86 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | low | > 80 |
| Escherichia fergusonii Becca | 0.59 | EFB2_03137 | | Hydroxyacylglutathione hydrolase GloC | 0.86 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | low | > 86 |
| Escherichia coli ECRC99 | 0.59 | KEDOAH_22345 | gloC | hydroxyacylglutathione hydrolase GloC | 0.86 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_21950 | gloC | hydroxyacylglutathione hydrolase GloC | 0.86 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_02740 | | Hydroxyacylglutathione hydrolase GloC | 0.86 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | low | > 74 |
| Escherichia coli ECRC98 | 0.59 | JDDGAC_09000 | gloC | hydroxyacylglutathione hydrolase GloC | 0.86 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | low | > 87 |
| Escherichia coli ECRC62 | 0.59 | BNILDI_20205 | gloC | hydroxyacylglutathione hydrolase GloC | 0.86 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | low | > 75 |
| Escherichia coli Nissle 1917 | 0.59 | ECOLIN_RS04905 | | hydroxyacylglutathione hydrolase GloC | 0.86 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | — | — |
| Enterobacter sp. TBS_079 | 0.59 | MPMX20_01585 | | Hydroxyacylglutathione hydrolase GloC | 0.86 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | low | > 85 |
| Escherichia coli BL21 | 0.59 | ECD_00931 | | putative metal-binding enzyme | 0.86 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | — | — |
| Escherichia coli BW25113 | 0.59 | b0927 | ycbL | predicted metal-binding enzyme (NCBI) | 0.86 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.59 | HER17_RS12035 | | MBL fold metallo-hydrolase | 0.83 | HER17_RS05580 | | RNA polymerase-binding protein DksA | low | > 75 |
| Enterobacter asburiae PDN3 | 0.59 | EX28DRAFT_2009 | | Zn-dependent hydrolases, including glyoxylases | 0.86 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF3684 | | Hypothetical metal-binding enzyme, YcbL homolog | 0.86 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | low | > 78 |
| Serratia liquefaciens MT49 | 0.58 | IAI46_08745 | | MBL fold metallo-hydrolase | 0.86 | IAI46_21210 | | RNA polymerase-binding protein DksA | low | > 87 |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS12995 | | MBL fold metallo-hydrolase | 0.85 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | low | > 71 |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS12920 | | MBL fold metallo-hydrolase | 0.86 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | — | — |
| Erwinia amylovora T8 | 0.57 | OLJFJH_16050 | | Hydroxyacylglutathione hydrolase GloC | 0.86 | OLJFJH_00765 | | RNA polymerase-binding protein DksA | — | — |
| Dechlorosoma suillum PS | 0.57 | Dsui_3107 | | Zn-dependent hydrolase, glyoxylase | 0.56 | Dsui_2717 | | RNA polymerase-binding protein DksA | low | > 51 |
| Dickeya dianthicola ME23 | 0.57 | DZA65_RS13455 | | MBL fold metallo-hydrolase | 0.85 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | — | — |
| Erwinia tracheiphila SCR3 | 0.56 | LU632_RS09895 | | MBL fold metallo-hydrolase | 0.86 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | — | — |
| Pantoea sp. MT58 | 0.56 | IAI47_12770 | | MBL fold metallo-hydrolase | 0.85 | IAI47_15635 | | RNA polymerase-binding protein DksA | low | > 76 |
| Erwinia tracheiphila HP pepo 2.2 | 0.56 | IJEDHG_20400 | | Hydroxyacylglutathione hydrolase GloC | 0.86 | IJEDHG_15060 | dksA | RNA polymerase-binding protein DksA | — | — |
| Pantoea agglomerans CFBP13505 P0401 | 0.55 | PagCFBP13505_RS04560 | | MBL fold metallo-hydrolase | 0.85 | PagCFBP13505_RS13365 | | RNA polymerase-binding protein DksA | low | > 74 |
| Rhodospirillum rubrum S1H | 0.55 | Rru_A1522 | | Beta-lactamase-like (NCBI) | 0.28 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | — | — |
| Shewanella amazonensis SB2B | 0.55 | Sama_2142 | | metallo-beta-lactamase family protein (RefSeq) | 0.82 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 62 |
| Rahnella sp. WP5 | 0.54 | EX31_RS18150 | | MBL fold metallo-hydrolase | 0.86 | EX31_RS03250 | | RNA polymerase-binding protein DksA | low | > 89 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_03450 | | Beta-lactamase hydrolase-like protein | 0.70 | MIT1002_03690 | | DnaK suppressor protein | low | > 70 |
| Caulobacter crescentus NA1000 Δfur | 0.53 | CCNA_01241 | | Zn-dependent hydrolase, glyoxalase II family | 0.34 | CCNA_02663 | | DnaK suppressor protein DksA | low | > 67 |
| Caulobacter crescentus NA1000 | 0.53 | CCNA_01241 | | Zn-dependent hydrolase, glyoxalase II family | 0.34 | CCNA_02663 | | DnaK suppressor protein DksA | low | > 66 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.53 | A4249_RS06505 | | MBL fold metallo-hydrolase | 0.34 | A4249_RS08530 | | RNA polymerase-binding protein DksA | low | > 48 |
| Ralstonia sp. UNC404CL21Col | 0.53 | ABZR87_RS03825 | | MBL fold metallo-hydrolase | 0.33 | ABZR87_RS05100 | | RNA polymerase-binding protein DksA | low | > 80 |
| Rhizobium sp. OAE497 | 0.50 | ABIE40_RS12965 | | MBL fold metallo-hydrolase | 0.35 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | low | > 107 |
| Rhodopseudomonas palustris CGA009 | 0.50 | TX73_002945 | | MBL fold metallo-hydrolase | 0.30 | TX73_020255 | | RNA polymerase-binding protein DksA | low | > 86 |
| Sphingomonas koreensis DSMZ 15582 | 0.50 | Ga0059261_2228 | | Zn-dependent hydrolases, including glyoxylases | 0.32 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | low | > 68 |
| Sphingobium sp. HT1-2 | 0.49 | GFF667 | | Hypothetical metal-binding enzyme, YcbL homolog | 0.33 | GFF2254 | | DksA family protein PA5536 (no Zn-finger) | low | > 95 |
| Xanthobacter sp. DMC5 | 0.48 | GFF3817 | | Hydroxyacylglutathione hydrolase GloC | 0.33 | GFF1254 | | RNA polymerase-binding transcription factor DksA | — | — |
| Sinorhizobium meliloti 1021 | 0.48 | SMc01587 | | hypothetical protein | 0.35 | SMc00469 | | DnaK suppressor protein | — | — |
| Agrobacterium fabrum C58 | 0.48 | Atu2201 | | hydrolase | 0.35 | Atu1359 | | dnaK deletion suppressor protein | low | > 89 |
| Bosea sp. OAE506 | 0.46 | ABIE41_RS00100 | | MBL fold metallo-hydrolase | 0.31 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.34 | PfGW456L13_1623 | | Hypothetical metal-binding enzyme, YcbL homolog | 0.67 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.33 | Pf1N1B4_2963 | | Hypothetical metal-binding enzyme, YcbL homolog | 0.68 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | — | — |
| Pseudomonas stutzeri RCH2 | 0.33 | Psest_3219 | | Zn-dependent hydrolases, including glyoxylases | 0.68 | Psest_1003 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas sp. SVBP6 | 0.33 | COO64_RS03445 | | MBL fold metallo-hydrolase | 0.67 | COO64_RS15070 | dksA | RNA polymerase-binding protein DksA | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.33 | AO353_15160 | | MBL fold metallo-hydrolase | 0.68 | AO353_14420 | | molecular chaperone DnaK | low | > 101 |
| Pseudomonas segetis P6 | 0.33 | ACVTMO_RS18280 | | MBL fold metallo-hydrolase | 0.69 | ACVTMO_RS06235 | dksA | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas sp. DMC3 | 0.33 | GFF4448 | | Hydroxyacylglutathione hydrolase GloC | 0.68 | GFF4034 | | RNA polymerase-binding transcription factor DksA | low | > 89 |
| Pseudomonas lactucae CFBP13502 | 0.33 | GEMAOFIL_01115 | | Hydroxyacylglutathione hydrolase GloC | 0.69 | GEMAOFIL_04926 | | RNA polymerase-binding transcription factor DksA | low | > 96 |
| Pseudomonas aeruginosa PUPa3 | 0.33 | DQ20_RS44490 | | MBL fold metallo-hydrolase | 0.70 | DQ20_RS52680 | dksA;go_function=enzyme | RNA polymerase-binding protein DksA | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.33 | DY961_RS08335 | | MBL fold metallo-hydrolase | 0.70 | DY961_RS09350 | dksA;go_function=enzyme | RNA polymerase-binding protein DksA | low | > 100 |
| Pseudomonas orientalis W4I3 | 0.33 | QF045_RS07550 | | MBL fold metallo-hydrolase | 0.69 | QF045_RS26135 | | RNA polymerase-binding protein DksA | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.33 | IKLFDK_03655 | | MBL fold metallo-hydrolase | 0.70 | IKLFDK_30000 | | RNA polymerase-binding protein DksA | low | > 98 |
| Pseudomonas fluorescens SBW25-INTG | 0.32 | PFLU_RS04625 | | MBL fold metallo-hydrolase | 0.67 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.32 | PFLU_RS04625 | | MBL fold metallo-hydrolase | 0.67 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | low | > 109 |
| Pseudomonas simiae WCS417 | 0.32 | PS417_04560 | | beta-lactamase | 0.69 | PS417_23875 | | molecular chaperone DnaK | — | — |
| Pseudomonas sp. S08-1 | 0.31 | OH686_06295 | | MBL-fold metallo-hydrolase superfamily | 0.70 | OH686_17280 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas putida KT2440 | 0.31 | PP_0772 | | Metallo-beta-lactamase family protein | 0.64 | PP_4693 | | RNA polymerase-binding transcription factor DksA | low | > 96 |
| Pseudomonas sp. BP01 | 0.31 | JOY50_RS19395 | | MBL fold metallo-hydrolase | 0.68 | JOY50_RS27695 | dksA | RNA polymerase-binding protein DksA | low | > 84 |
Not shown: 30 genomes with orthologs for CSW01_06415 only; 8 genomes with orthologs for CSW01_03155 only