| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00175 | | serine/threonine protein kinase | 1.0 | CSW01_02835 | | RNA polymerase sigma factor RpoS | 0.61 | 19 |
| Pantoea sp. MT58 | 0.63 | IAI47_00420 | | serine/threonine protein kinase | 0.71 | IAI47_04235 | | RNA polymerase sigma factor RpoS | low | > 76 |
| Rahnella sp. WP5 | 0.62 | EX31_RS15915 | | serine/threonine protein kinase | 0.70 | EX31_RS07825 | | RNA polymerase sigma factor RpoS | low | > 89 |
| Serratia liquefaciens MT49 | 0.62 | IAI46_25000 | | serine/threonine protein kinase | 0.70 | IAI46_03790 | | RNA polymerase sigma factor RpoS | low | > 87 |
| Pectobacterium carotovorum WPP14 | 0.60 | HER17_RS21480 | | serine/threonine protein kinase | 0.68 | HER17_RS04350 | | RNA polymerase sigma factor RpoS | low | > 75 |
| Dickeya dadantii 3937 | 0.60 | DDA3937_RS00095 | | serine/threonine protein kinase | 0.69 | DDA3937_RS16875 | | RNA polymerase sigma factor RpoS | — | — |
| Dickeya dianthicola ME23 | 0.59 | DZA65_RS22245 | | serine/threonine protein kinase | 0.68 | DZA65_RS18020 | | RNA polymerase sigma factor RpoS | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.59 | MIT1002_00718 | | serine/threonine protein kinase | 0.69 | MIT1002_00625 | | RNA polymerase sigma factor RpoS | low | > 70 |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_06305 | srkA | stress response kinase SrkA | 0.70 | NOLOHH_12310 | rpoS | RNA polymerase sigma factor RpoS | 0.36 | 23 |
| Escherichia coli ECRC98 | 0.59 | JDDGAC_17800 | srkA | stress response kinase SrkA | 0.70 | JDDGAC_24160 | rpoS | RNA polymerase sigma factor RpoS | low | > 87 |
| Escherichia coli ECRC102 | 0.59 | NIAGMN_11930 | srkA | stress response kinase SrkA | 0.70 | NIAGMN_18265 | rpoS | RNA polymerase sigma factor RpoS | low | > 80 |
| Escherichia coli ECRC101 | 0.59 | MCAODC_04675 | srkA | stress response kinase SrkA | 0.70 | MCAODC_11020 | rpoS | RNA polymerase sigma factor RpoS | low | > 87 |
| Escherichia coli ECRC100 | 0.59 | OKFHMN_14175 | srkA | stress response kinase SrkA | 0.70 | OKFHMN_20495 | rpoS | RNA polymerase sigma factor RpoS | low | > 79 |
| Escherichia coli ECRC62 | 0.59 | BNILDI_05225 | srkA | stress response kinase SrkA | 0.70 | BNILDI_10860 | rpoS | RNA polymerase sigma factor RpoS | low | > 75 |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS21270 | | serine/threonine protein kinase | 0.68 | HGI48_RS16945 | | RNA polymerase sigma factor RpoS | low | > 71 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_04194 | | Stress response kinase A | 0.70 | OHPLBJKB_00992 | | RNA polymerase sigma factor RpoS | low | > 74 |
| Escherichia fergusonii Becca | 0.59 | EFB2_04758 | | Stress response kinase A | 0.70 | EFB2_01169 | | RNA polymerase sigma factor RpoS | low | > 86 |
| Escherichia coli BL21 | 0.59 | ECD_03745 | | Cpx stress response Thr/Ser protein kinase; MazF antagonist protein | 0.70 | ECD_02591 | | RNA polymerase, sigma S (sigma 38) factor | low | > 61 |
| Escherichia coli BW25113 | 0.59 | b3859 | yihE | predicted kinase (NCBI) | 0.70 | b2741 | rpoS | RNA polymerase sigma factor (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_12810 | srkA | stress response kinase SrkA | 0.70 | HEPCGN_19675 | rpoS | RNA polymerase sigma factor RpoS | low | > 88 |
| Klebsiella michiganensis M5al | 0.58 | BWI76_RS00340 | | stress response kinase A | 0.70 | BWI76_RS22645 | | RNA polymerase sigma factor RpoS | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.58 | KDGMDA_08955 | | serine/threonine protein kinase | 0.70 | KDGMDA_03220 | | RNA polymerase sigma factor RpoS | 0.37 | 58 |
| Erwinia amylovora T8 | 0.57 | OLJFJH_05460 | | serine/threonine protein kinase | 0.70 | OLJFJH_09380 | | RNA polymerase sigma factor RpoS | low | > 58 |
| Enterobacter asburiae PDN3 | 0.57 | EX28DRAFT_4340 | | Putative homoserine kinase type II (protein kinase fold) | 0.70 | EX28DRAFT_2837 | | RNA polymerase, sigma 38 subunit, RpoS | low | > 76 |
| Shewanella loihica PV-4 | 0.57 | Shew_0264 | | serine/threonine protein kinase (RefSeq) | 0.68 | Shew_1213 | | RpoD family RNA polymerase sigma factor (RefSeq) | low | > 60 |
| Enterobacter sp. TBS_079 | 0.57 | MPMX20_04604 | | Stress response kinase A | 0.70 | MPMX20_03627 | | RNA polymerase sigma factor RpoS | low | > 85 |
| Shewanella oneidensis MR-1 | 0.57 | SO0332 | | hypothetical kinase (NCBI ptt file) | 0.66 | SO3432 | rpoS | RNA polymerase sigma-38 factor (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.57 | Shewana3_3839 | | serine/threonine protein kinase (RefSeq) | 0.66 | Shewana3_1124 | | RNA polymerase, sigma 38 subunit, RpoS (RefSeq) | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.56 | GFF2212 | | YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling | 0.70 | GFF4788 | | RNA polymerase sigma factor RpoS | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.54 | LU632_RS23880 | | serine/threonine protein kinase | 0.69 | LU632_RS06480 | rpoS | RNA polymerase sigma factor RpoS | low | > 73 |
| Erwinia tracheiphila HP pepo 2.2 | 0.54 | IJEDHG_10980 | | serine/threonine protein kinase | 0.69 | IJEDHG_17500 | rpoS | RNA polymerase sigma factor RpoS | low | > 61 |
| Shewanella amazonensis SB2B | 0.53 | Sama_3322 | | serine/threonine protein kinase (RefSeq) | 0.68 | Sama_1044 | | RNA polymerase sigma-38 factor (RefSeq) | low | > 62 |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS00430 | | serine/threonine protein kinase | 0.38 | QEN71_RS22240 | | RNA polymerase sigma factor RpoS | low | > 153 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_4755 | | YihE protein, required for LPS synthesis | 0.62 | Pf6N2E2_3037 | | RNA polymerase sigma factor RpoS | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS07220 | | serine/threonine protein kinase | 0.44 | HSERO_RS14830 | | RNA polymerase sigma factor RpoS | low | > 78 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_14115 | | serine/threonine protein kinase | 0.62 | AO356_05885 | | RNA polymerase sigma factor RpoS | low | > 104 |
| Pseudomonas sp. DMC3 | 0.48 | GFF80 | | Stress response kinase A | 0.62 | GFF2084 | | RNA polymerase sigma factor RpoS | low | > 89 |
| Pseudomonas fluorescens FW300-N2E3 | 0.48 | AO353_07545 | | serine/threonine protein kinase | 0.63 | AO353_16615 | | RNA polymerase sigma factor RpoS | low | > 101 |
| Pseudomonas lactucae CFBP13502 | 0.48 | GEMAOFIL_05326 | | Serine/threonine protein kinase RdoA | 0.62 | GEMAOFIL_01443 | | RNA polymerase sigma factor RpoS | low | > 96 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_04107 | | Serine/threonine protein kinase RdoA | 0.62 | PFR28_00427 | | RNA polymerase sigma factor RpoS | low | > 88 |
| Pseudomonas orientalis W4I3 | 0.48 | QF045_RS00435 | | serine/threonine protein kinase | 0.62 | QF045_RS09210 | | RNA polymerase sigma factor RpoS | low | > 93 |
| Pseudomonas fluorescens GW456-L13 | 0.48 | PfGW456L13_1143 | | YihE protein, required for LPS synthesis | 0.62 | PfGW456L13_4674 | | RNA polymerase sigma factor RpoS | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.48 | Pf1N1B4_2481 | | YihE protein, required for LPS synthesis | 0.62 | Pf1N1B4_3115 | | RNA polymerase sigma factor RpoS | low | > 87 |
| Dechlorosoma suillum PS | 0.47 | Dsui_2766 | | putative homoserine kinase type II (protein kinase fold) | 0.44 | Dsui_1971 | | RNA polymerase sigma factor RpoS | low | > 51 |
| Pseudomonas sp. SVBP6 | 0.47 | COO64_RS22745 | | serine/threonine protein kinase | 0.63 | COO64_RS19795 | rpoS | RNA polymerase sigma factor RpoS | low | > 93 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_26025 | | serine/threonine protein kinase | 0.62 | PS417_06365 | | RNA polymerase sigma factor | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS27670 | | serine/threonine protein kinase | 0.62 | PFLU_RS06430 | | RNA polymerase sigma factor RpoS | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS27670 | | serine/threonine protein kinase | 0.62 | PFLU_RS06430 | | RNA polymerase sigma factor RpoS | low | > 109 |
| Variovorax sp. SCN45 | 0.47 | GFF3567 | | YihE protein, required for LPS synthesis | 0.34 | GFF2842 | | RNA polymerase sigma factor RpoS | low | > 127 |
| Pseudomonas stutzeri RCH2 | 0.47 | Psest_0409 | | Putative homoserine kinase type II (protein kinase fold) | 0.61 | Psest_2806 | | RNA polymerase sigma factor RpoS | low | > 67 |
| Pseudomonas aeruginosa PUPa3 | 0.47 | DQ20_RS36890 | | serine/threonine protein kinase | 0.62 | DQ20_RS42260 | rpoS;go_function=DNA | RNA polymerase sigma factor RpoS | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.47 | IKLFDK_22995 | | serine/threonine protein kinase | 0.62 | IKLFDK_18495 | | RNA polymerase sigma factor RpoS | low | > 98 |
| Pseudomonas sp. S08-1 | 0.47 | OH686_10380 | | YihE protein, required for LPS synthesis | 0.62 | OH686_18185 | | RNA polymerase sigma factor RpoS | low | > 80 |
| Pseudomonas segetis P6 | 0.47 | MPMX49_00755 | | Stress response kinase A | 0.62 | MPMX49_03428 | | RNA polymerase sigma factor RpoS | low | > 75 |
| Pseudomonas aeruginosa MRSN321 | 0.46 | DY961_RS22435 | | serine/threonine protein kinase | 0.62 | DY961_RS14865 | rpoS;go_function=DNA | RNA polymerase sigma factor RpoS | low | > 100 |
| Pseudomonas sp. BP01 | 0.46 | JOY50_RS17915 | | serine/threonine protein kinase | 0.63 | JOY50_RS23755 | rpoS | RNA polymerase sigma factor RpoS | low | > 84 |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS01730 | | serine/threonine protein kinase | 0.38 | BPHYT_RS09115 | | RNA polymerase sigma factor RpoS | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.46 | H281DRAFT_02190 | | Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist | 0.38 | H281DRAFT_00844 | | RNA polymerase, sigma 38 subunit, RpoS | — | — |
| Paraburkholderia graminis OAS925 | 0.46 | ABIE53_000438 | | Ser/Thr protein kinase RdoA (MazF antagonist) | 0.38 | ABIE53_002057 | | RNA polymerase nonessential primary-like sigma factor | low | > 113 |
| Pseudomonas putida KT2440 | 0.46 | PP_0359 | | serine/threonine protein kinase | 0.63 | PP_1623 | | RNA polymerase, sigma S (sigma 38) factor | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.45 | Psyr_4697 | | Aminoglycoside phosphotransferase | 0.62 | Psyr_1374 | | RNA polymerase, sigma 38 subunit, RpoS | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.45 | Psyr_4697 | | Aminoglycoside phosphotransferase | 0.62 | Psyr_1374 | | RNA polymerase, sigma 38 subunit, RpoS | low | > 86 |
| Marinobacter adhaerens HP15 | 0.41 | HP15_2490 | | kinase | 0.62 | HP15_1283 | | RNA polymerase, sigma 70 subunit, RpoD family | low | > 73 |
Not shown: 18 genomes with orthologs for CSW01_00175 only; 0 genomes with orthologs for CSW01_02835 only