Conservation of cofitness between CSW01_19050 and CSW01_01485 in Vibrio cholerae E7946 ATCC 55056

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_19050 phosphoenolpyruvate synthase 1.0 CSW01_01485 transcriptional regulator 0.68 15
Serratia liquefaciens MT49 0.72 IAI46_11115 phosphoenolpyruvate synthase 0.54 IAI46_23965 gluconate operon transcriptional repressor GntR low > 87
Rahnella sp. WP5 0.72 EX31_RS13935 phosphoenolpyruvate synthase 0.54 EX31_RS05060 gluconate operon transcriptional repressor GntR low > 89
Pseudomonas aeruginosa PA14 0.71 IKLFDK_08555 phosphoenolpyruvate synthase 0.36 IKLFDK_11375 LacI family DNA-binding transcriptional regulator GntR low > 98
Pseudomonas aeruginosa PUPa3 0.71 NPBIFN_03400 ppsA phosphoenolpyruvate synthase 0.36 NPBIFN_02811 gntR LacI family DNA-binding transcriptional regulator GntR 0.40 25
Pseudomonas aeruginosa MRSN321 0.71 PFGADD_03364 ppsA phosphoenolpyruvate synthase 0.36 PFGADD_02780 gntR LacI family DNA-binding transcriptional regulator GntR low > 99
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF3539 Phosphoenolpyruvate synthase (EC 2.7.9.2) 0.49 GFF570 Gluconate utilization system Gnt-I transcriptional repressor low > 78
Enterobacter asburiae PDN3 0.71 EX28DRAFT_1704 phosphoenolpyruvate synthase (EC 2.7.9.2) 0.51 EX28DRAFT_4274 transcriptional regulator, LacI family low > 76
Pseudomonas segetis P6 0.71 ACVTMO_RS13015 ppsA phosphoenolpyruvate synthase 0.33 ACVTMO_RS11810 gntR HTH-type transcriptional regulator GntR low > 75
Dickeya dianthicola 67-19 0.71 HGI48_RS12875 phosphoenolpyruvate synthase 0.55 HGI48_RS19900 gluconate operon transcriptional repressor GntR low > 71
Dickeya dianthicola ME23 0.71 DZA65_RS13340 phosphoenolpyruvate synthase 0.55 DZA65_RS20970 gluconate operon transcriptional repressor GntR low > 75
Pseudomonas sp. DMC3 0.71 GFF5236 Phosphoenolpyruvate synthase 0.33 GFF5268 HTH-type transcriptional regulator GntR low > 89
Pantoea agglomerans CFBP13505 P0401 0.71 PagCFBP13516_RS11075 ppsA phosphoenolpyruvate synthase 0.50 PagCFBP13516_RS01635 gntR gluconate operon transcriptional repressor GntR 0.82 36
Pectobacterium carotovorum WPP14 0.71 HER17_RS08885 phosphoenolpyruvate synthase 0.52 HER17_RS01450 gluconate operon transcriptional repressor GntR low > 75
Pantoea sp. MT58 0.71 IAI47_10905 phosphoenolpyruvate synthase 0.52 IAI47_01650 gluconate operon transcriptional repressor GntR low > 76
Dickeya dadantii 3937 0.71 DDA3937_RS12805 phosphoenolpyruvate synthase 0.55 DDA3937_RS19785 gluconate operon transcriptional repressor GntR low > 74
Pseudomonas protegens RBAN4 0.71 FABNJH_09665 ppsA phosphoenolpyruvate synthase 0.33 FABNJH_23640 Gluconate utilization system GNT-I transcriptional repressor — —
Klebsiella michiganensis M5al 0.71 BWI76_RS17065 phosphoenolpyruvate synthase 0.51 BWI76_RS26245 transcriptional regulator low > 92
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_00865 phosphoenolpyruvate synthase 0.33 AO353_03255 LacI family transcriptional regulator low > 101
Pseudomonas sp. BP01 0.71 JOY50_RS22170 ppsA phosphoenolpyruvate synthase 0.31 JOY50_RS23605 LacI family DNA-binding transcriptional regulator low > 84
Pseudomonas putida KT2440 0.70 PP_2082 phosphoenolpyruvate synthetase 0.31 PP_3415 Transcriptional regulator, LacI family low > 96
Enterobacter sp. TBS_079 0.70 MPMX20_01922 Phosphoenolpyruvate synthase 0.52 MPMX20_04319 HTH-type transcriptional regulator GntR low > 85
Pseudomonas sp. SVBP6 0.70 COO64_RS05380 ppsA phosphoenolpyruvate synthase 0.34 COO64_RS25590 LacI family DNA-binding transcriptional regulator low > 91
Erwinia amylovora T8 0.70 OLJFJH_14620 phosphoenolpyruvate synthase 0.56 OLJFJH_04280 gluconate operon transcriptional repressor GntR low > 58
Pseudomonas fluorescens FW300-N1B4 0.70 Pf1N1B4_3826 Phosphoenolpyruvate synthase (EC 2.7.9.2) 0.35 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Escherichia coli ECOR38 0.70 HEPCGN_05510 ppsA phosphoenolpyruvate synthase 0.52 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR low > 88
Pseudomonas simiae WCS417 0.70 PS417_21020 phosphoenolpyruvate synthase 0.33 PS417_21990 LacI family transcriptional regulator low > 88
Escherichia fergusonii Becca 0.70 EFB2_02289 Phosphoenolpyruvate synthase 0.52 EFB2_00382 HTH-type transcriptional regulator GntR low > 86
Escherichia coli ECRC101 0.70 MCAODC_18265 ppsA phosphoenolpyruvate synthase 0.52 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC99 0.70 KEDOAH_00965 ppsA phosphoenolpyruvate synthase 0.52 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC62 0.70 BNILDI_16455 ppsA phosphoenolpyruvate synthase 0.52 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR low > 75
Escherichia coli ECOR27 0.70 NOLOHH_17665 ppsA phosphoenolpyruvate synthase 0.51 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR low > 75
Escherichia coli ECRC102 0.70 NIAGMN_00920 ppsA phosphoenolpyruvate synthase 0.52 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR low > 80
Escherichia coli ECRC100 0.70 OKFHMN_27145 ppsA phosphoenolpyruvate synthase 0.52 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR low > 79
Escherichia coli BW25113 0.70 b1702 pps phosphoenolpyruvate synthase (NCBI) 0.52 b3438 gntR DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia coli ECRC98 0.70 JDDGAC_01720 ppsA phosphoenolpyruvate synthase 0.52 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR low > 87
Pseudomonas stutzeri RCH2 0.70 Psest_2316 phosphoenolpyruvate synthase 0.34 Psest_2126 Transcriptional regulators low > 67
Pseudomonas orientalis W4I3 0.70 QF045_RS22845 phosphoenolpyruvate synthase 0.34 QF045_RS24095 LacI family DNA-binding transcriptional regulator low > 93
Escherichia coli BL21 0.70 ECD_01671 phosphoenolpyruvate synthase 0.51 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor low > 61
Escherichia coli Nissle 1917 0.70 ECOLIN_RS09510 phosphoenolpyruvate synthase 0.52 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR — —
Pseudomonas lactucae CFBP13502 0.70 GEMAOFIL_04349 Phosphoenolpyruvate synthase 0.34 GEMAOFIL_04536 HTH-type transcriptional regulator GntR low > 96
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS22630 phosphoenolpyruvate synthase 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.70 PFLU_RS22630 phosphoenolpyruvate synthase 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Klebsiella pneumoniae MKP103 0.70 KDGMDA_24285 phosphoenolpyruvate synthase 0.51 KDGMDA_07120 gluconate operon transcriptional repressor GntR low > 94
Klebsiella pneumoniae MRSN742743 0.70 GJGHJB_02018 ppsA phosphoenolpyruvate synthase 0.51 GJGHJB_00314 gntR gluconate operon transcriptional repressor GntR low > 83
Alteromonas macleodii MIT1002 0.70 MIT1002_01816 Phosphoenolpyruvate synthase 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor low > 70
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_2090 phosphoenolpyruvate synthase 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_2090 phosphoenolpyruvate synthase 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Erwinia tracheiphila SCR3 0.70 LU632_RS11025 ppsA phosphoenolpyruvate synthase 0.53 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR 0.44 48
Erwinia tracheiphila HP pepo 2.2 0.70 IJEDHG_25335 ppsA phosphoenolpyruvate synthase 0.54 IJEDHG_08040 gntR gluconate operon transcriptional repressor GntR low > 61
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_2389 Phosphoenolpyruvate synthase (EC 2.7.9.2) 0.34 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor low > 103
Pseudomonas sp. RS175 0.69 PFR28_01038 Phosphoenolpyruvate synthase 0.34 PFR28_00593 HTH-type transcriptional regulator GntR low > 88
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_02825 phosphoenolpyruvate synthase 0.34 AO356_05065 LacI family transcriptional regulator low > 104
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_4112 Phosphoenolpyruvate synthase (EC 2.7.9.2) 0.34 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Castellaniella sp019104865 MT123 0.63 ABCV34_RS04025 phosphoenolpyruvate synthase 0.26 ABCV34_RS12285 LacI family DNA-binding transcriptional regulator — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF3920 Phosphoenolpyruvate synthase (EC 2.7.9.2) 0.30 GFF5509 Gluconate utilization system Gnt-I transcriptional repressor low > 90
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS11925 phosphoenolpyruvate synthase 0.26 ABZR87_RS18255 LacI family DNA-binding transcriptional regulator low > 80
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS06505 phosphoenolpyruvate synthase 0.29 QEN71_RS13585 LacI family DNA-binding transcriptional regulator low > 153
Acidovorax sp. GW101-3H11 0.62 Ac3H11_206 Phosphoenolpyruvate synthase (EC 2.7.9.2) 0.29 Ac3H11_3230 Gluconate utilization system Gnt-I transcriptional repressor low > 79
Ralstonia solanacearum GMI1000 0.62 RS_RS07130 phosphoenolpyruvate synthase 0.26 RS_RS24865 LacI family DNA-binding transcriptional regulator low > 80
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS12055 phosphoenolpyruvate synthase 0.32 BPHYT_RS00410 LacI family transcription regulator low > 109
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_00627 phosphoenolpyruvate synthase 0.30 H281DRAFT_05920 transcriptional regulator, LacI family low > 103
Variovorax sp. OAS795 0.62 ABID97_RS10815 phosphoenolpyruvate synthase 0.29 ABID97_RS01205 LacI family DNA-binding transcriptional regulator low > 91
Ralstonia solanacearum PSI07 0.62 RPSI07_RS17015 phosphoenolpyruvate synthase 0.26 RPSI07_RS07575 LacI family DNA-binding transcriptional regulator low > 81
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS11790 phosphoenolpyruvate synthase 0.26 RR42_RS22645 GntR family transcriptional regulator low > 128

Not shown: 27 genomes with orthologs for CSW01_19050 only; 10 genomes with orthologs for CSW01_01485 only