Conservation of cofitness between CSW01_18055 and CSW01_01485 in Vibrio cholerae E7946 ATCC 55056

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_18055 hypothetical protein 1.0 CSW01_01485 transcriptional regulator 0.72 7
Pseudomonas orientalis W4I3 0.55 QF045_RS10120 5-oxoprolinase subunit PxpA 0.34 QF045_RS24095 LacI family DNA-binding transcriptional regulator low > 93
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_3366 Lactam utilization protein LamB 0.35 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas aeruginosa PA14 0.55 IKLFDK_01525 5-oxoprolinase subunit A 3 0.36 IKLFDK_11375 LacI family DNA-binding transcriptional regulator GntR low > 98
Pseudomonas sp. DMC3 0.55 GFF2327 5-oxoprolinase subunit A 3 0.33 GFF5268 HTH-type transcriptional regulator GntR low > 89
Pseudomonas aeruginosa PUPa3 0.55 NPBIFN_04774 pxpA3 5-oxoprolinase subunit A 3 0.36 NPBIFN_02811 gntR LacI family DNA-binding transcriptional regulator GntR low > 101
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_04335 hypothetical protein 0.34 AO356_05065 LacI family transcriptional regulator 0.48 32
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_4478 Lactam utilization protein LamB 0.34 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas sp. RS175 0.54 PFR28_00728 5-oxoprolinase subunit A 3 0.34 PFR28_00593 HTH-type transcriptional regulator GntR low > 88
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_2708 Lactam utilization protein LamB 0.34 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor low > 103
Pseudomonas aeruginosa MRSN321 0.54 PFGADD_04715 pxpA3 5-oxoprolinase subunit A 3 0.36 PFGADD_02780 gntR LacI family DNA-binding transcriptional regulator GntR low > 99
Pseudomonas segetis P6 0.54 ACVTMO_RS07895 5-oxoprolinase subunit PxpA 0.33 ACVTMO_RS11810 gntR HTH-type transcriptional regulator GntR 0.46 29
Pseudomonas sp. BP01 0.54 JOY50_RS01450 5-oxoprolinase subunit PxpA 0.31 JOY50_RS23605 LacI family DNA-binding transcriptional regulator low > 84
Pseudomonas putida KT2440 0.54 PP_4577 UPF0271 protein PP_4577 0.31 PP_3415 Transcriptional regulator, LacI family 0.14 36
Pseudomonas lactucae CFBP13502 0.54 GEMAOFIL_01627 5-oxoprolinase subunit A 3 0.34 GEMAOFIL_04536 HTH-type transcriptional regulator GntR 0.63 30
Pseudomonas stutzeri RCH2 0.53 Psest_1542 Uncharacterized proteins, homologs of lactam utilization protein B 0.34 Psest_2126 Transcriptional regulators low > 67
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_17995 hypothetical protein 0.33 AO353_03255 LacI family transcriptional regulator low > 101
Pseudomonas sp. FW215-L2 0.53 GFF1627 hypothetical protein 0.34 GFF5170 HTH-type transcriptional regulator GntR low > 111
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS07555 LamB/YcsF family protein 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS07555 LamB/YcsF family protein 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas sp. SVBP6 0.53 COO64_RS22245 5-oxoprolinase subunit PxpA 0.34 COO64_RS25590 LacI family DNA-binding transcriptional regulator low > 91
Pseudomonas simiae WCS417 0.52 PS417_07470 hypothetical protein 0.33 PS417_21990 LacI family transcriptional regulator low > 88
Pseudomonas protegens RBAN4 0.52 FABNJH_07890 pxpA 5-oxoprolinase subunit A 0.33 FABNJH_23640 Gluconate utilization system GNT-I transcriptional repressor — —
Alteromonas macleodii MIT1002 0.47 MIT1002_02298 LamB/YcsF family protein 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor low > 70
Agrobacterium fabrum C58 0.42 Atu3910 LamB/YcsF family protein 0.28 Atu4685 LacI family transcriptional regulator low > 89
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_0497 LamB/YcsF 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_0497 LamB/YcsF 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Klebsiella pneumoniae MRSN742743 0.39 GJGHJB_05045 5-oxoprolinase subunit A 0.51 GJGHJB_00314 gntR gluconate operon transcriptional repressor GntR low > 83
Variovorax sp. OAS795 0.38 ABID97_RS23840 5-oxoprolinase subunit PxpA 0.29 ABID97_RS01205 LacI family DNA-binding transcriptional regulator low > 91
Azospirillum brasilense Sp245 0.37 AZOBR_RS14715 hypothetical protein 0.31 AZOBR_RS15720 LacI family transcription regulator — —
Azospirillum sp. SherDot2 0.37 MPMX19_04959 5-oxoprolinase subunit A 0.29 MPMX19_05332 HTH-type transcriptional regulator GntR 0.37 82
Enterobacter asburiae PDN3 0.37 EX28DRAFT_2274 Uncharacterized proteins, homologs of lactam utilization protein B 0.51 EX28DRAFT_4274 transcriptional regulator, LacI family low > 76
Ralstonia solanacearum GMI1000 0.37 RS_RS21600 hypothetical protein 0.26 RS_RS24865 LacI family DNA-binding transcriptional regulator low > 80
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS28660 5-oxoprolinase subunit PxpA 0.29 QEN71_RS13585 LacI family DNA-binding transcriptional regulator low > 153
Rahnella sp. WP5 0.36 EX31_RS15535 LamB/YcsF family protein 0.54 EX31_RS05060 gluconate operon transcriptional repressor GntR low > 89
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_05811 UPF0271 protein 0.30 H281DRAFT_05920 transcriptional regulator, LacI family low > 103
Castellaniella sp019104865 MT123 0.35 ABCV34_RS01510 5-oxoprolinase subunit PxpA 0.26 ABCV34_RS12285 LacI family DNA-binding transcriptional regulator low > 48
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS00650 hypothetical protein 0.26 RR42_RS22645 GntR family transcriptional regulator low > 128
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS08780 LamB/YcsF family protein 0.34 HSERO_RS05460 LacI family transcription regulator — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c28700 LamB/YcsF family protein 0.28 PGA1_c33870 putative HTH-type transcriptional regulator GntR 0.65 1
Klebsiella michiganensis M5al 0.35 BWI76_RS08360 LamB/YcsF family protein 0.51 BWI76_RS26245 transcriptional regulator low > 92
Enterobacter sp. TBS_079 0.35 MPMX20_01347 5-oxoprolinase subunit A 0.52 MPMX20_04319 HTH-type transcriptional regulator GntR low > 85
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS18635 LamB/YcsF family protein 0.32 BPHYT_RS00410 LacI family transcription regulator low > 109
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF4618 Lactam utilization protein LamB 0.49 GFF570 Gluconate utilization system Gnt-I transcriptional repressor low > 78
Klebsiella pneumoniae MKP103 0.35 KDGMDA_16680 5-oxoprolinase subunit PxpA 0.51 KDGMDA_07120 gluconate operon transcriptional repressor GntR low > 94
Escherichia coli ECOR38 0.34 HEPCGN_01215 pxpA 5-oxoprolinase subunit PxpA 0.52 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR low > 88
Escherichia fergusonii Becca 0.34 EFB2_03390 5-oxoprolinase subunit A 0.52 EFB2_00382 HTH-type transcriptional regulator GntR low > 86
Ralstonia solanacearum PSI07 0.34 RPSI07_RS02850 hypothetical protein 0.26 RPSI07_RS07575 LacI family DNA-binding transcriptional regulator low > 81
Escherichia coli Nissle 1917 0.34 ECOLIN_RS03815 5-oxoprolinase subunit PxpA 0.52 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR low > 55
Pantoea sp. MT58 0.34 IAI47_13795 5-oxoprolinase subunit PxpA 0.52 IAI47_01650 gluconate operon transcriptional repressor GntR low > 76
Dickeya dadantii 3937 0.34 DDA3937_RS06425 5-oxoprolinase subunit PxpA 0.55 DDA3937_RS19785 gluconate operon transcriptional repressor GntR low > 74
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS15325 5-oxoprolinase subunit PxpA 0.26 ABZR87_RS18255 LacI family DNA-binding transcriptional regulator low > 80
Escherichia coli ECRC62 0.34 BNILDI_21375 pxpA 5-oxoprolinase subunit PxpA 0.52 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR low > 75
Erwinia amylovora T8 0.34 OLJFJH_16995 5-oxoprolinase subunit PxpA 0.56 OLJFJH_04280 gluconate operon transcriptional repressor GntR low > 58
Escherichia coli BL21 0.34 ECD_00673 UPF0271 family protein 0.51 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor low > 61
Escherichia coli ECOR27 0.34 NOLOHH_23380 pxpA 5-oxoprolinase subunit PxpA 0.51 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.34 OHPLBJKB_03004 hypothetical protein 0.52 OHPLBJKB_00264 HTH-type transcriptional regulator GntR low > 74
Escherichia coli BW25113 0.33 b0713 ybgL hypothetical protein (NCBI) 0.52 b3438 gntR DNA-binding transcriptional repressor (NCBI) 0.18 38
Pectobacterium carotovorum WPP14 0.33 HER17_RS14975 5-oxoprolinase subunit PxpA 0.52 HER17_RS01450 gluconate operon transcriptional repressor GntR low > 75
Escherichia coli ECRC102 0.33 NIAGMN_05050 pxpA 5-oxoprolinase subunit PxpA 0.52 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR low > 80
Escherichia coli ECRC100 0.33 OKFHMN_06995 pxpA 5-oxoprolinase subunit PxpA 0.52 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR low > 79
Pantoea agglomerans CFBP13505 P0401 0.33 PagCFBP13516_RS13905 pxpA 5-oxoprolinase subunit PxpA 0.50 PagCFBP13516_RS01635 gntR gluconate operon transcriptional repressor GntR low > 80
Escherichia coli ECRC101 0.33 MCAODC_26215 pxpA 5-oxoprolinase subunit PxpA 0.52 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC98 0.33 JDDGAC_10650 pxpA 5-oxoprolinase subunit PxpA 0.52 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC99 0.33 KEDOAH_20970 pxpA 5-oxoprolinase subunit PxpA 0.52 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR — —
Dickeya dianthicola 67-19 0.33 HGI48_RS06470 5-oxoprolinase subunit PxpA 0.55 HGI48_RS19900 gluconate operon transcriptional repressor GntR low > 71
Serratia liquefaciens MT49 0.33 IAI46_06225 5-oxoprolinase subunit PxpA 0.54 IAI46_23965 gluconate operon transcriptional repressor GntR low > 87
Dinoroseobacter shibae DFL-12 0.33 Dshi_2026 LamB/YcsF family protein (RefSeq) 0.27 Dshi_3322 transcriptional regulator, LacI family (RefSeq) low > 64
Dickeya dianthicola ME23 0.33 DZA65_RS06815 5-oxoprolinase subunit PxpA 0.55 DZA65_RS20970 gluconate operon transcriptional repressor GntR low > 75
Collimonas humicola GW821-FHT01A05 0.31 MPMX01_04802 5-oxoprolinase subunit A 0.33 MPMX01_05026 HTH-type transcriptional regulator GntR low > 87

Not shown: 22 genomes with orthologs for CSW01_18055 only; 7 genomes with orthologs for CSW01_01485 only