| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 1.0 | CSW01_01285 | | perosamine synthetase | 0.88 | 15 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.86 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | 0.25 | GFF1858 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.86 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | 0.24 | EX28DRAFT_4082 | | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | — | — |
| Enterobacter sp. TBS_079 | 0.86 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | 0.24 | MPMX20_04380 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | low | > 85 |
| Klebsiella pneumoniae MKP103 | 0.86 | KDGMDA_13270 | | RNA polymerase-binding protein DksA | 0.24 | KDGMDA_07345 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 95 |
| Escherichia coli ECRC100 | 0.86 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | 0.54 | OKFHMN_24430 | rfbE | GDP-perosamine synthase RfbE/PerA | low | > 79 |
| Serratia liquefaciens MT49 | 0.86 | IAI46_21210 | | RNA polymerase-binding protein DksA | 0.25 | IAI46_11015 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 87 |
| Escherichia coli ECRC102 | 0.86 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | 0.54 | NIAGMN_22375 | rfbE | GDP-perosamine synthase RfbE/PerA | — | — |
| Escherichia coli BL21 | 0.86 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | 0.24 | ECD_01942 | | VioA, involved in dTDP-N-acetylviosamine synthesis | — | — |
| Escherichia coli ECOR27 | 0.86 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | 0.23 | NOLOHH_14620 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 76 |
| Escherichia coli Nissle 1917 | 0.86 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | 0.22 | ECOLIN_RS13125 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | — | — |
| Dickeya dadantii 3937 | 0.86 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | 0.26 | DDA3937_RS21390 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | — | — |
| Rahnella sp. WP5 | 0.86 | EX31_RS03250 | | RNA polymerase-binding protein DksA | 0.24 | EX31_RS14020 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 89 |
| Escherichia coli ECRC98 | 0.86 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | 0.54 | JDDGAC_28540 | rfbE | GDP-perosamine synthase RfbE/PerA | low | > 87 |
| Escherichia coli ECRC99 | 0.86 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | 0.54 | KEDOAH_03720 | rfbE | GDP-perosamine synthase RfbE/PerA | — | — |
| Escherichia coli BW25113 | 0.86 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | 0.22 | b2253 | arnB | uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent (RefSeq) | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.86 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | 0.24 | LU632_RS16495 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.86 | IJEDHG_15060 | dksA | RNA polymerase-binding protein DksA | 0.24 | IJEDHG_02605 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.86 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | 0.22 | OHPLBJKB_01458 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | low | > 74 |
| Escherichia coli ECRC101 | 0.86 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | 0.54 | MCAODC_20510 | rfbE | GDP-perosamine synthase RfbE/PerA | — | — |
| Erwinia amylovora T8 | 0.86 | OLJFJH_00765 | | RNA polymerase-binding protein DksA | 0.24 | OLJFJH_17365 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | — | — |
| Escherichia fergusonii Becca | 0.86 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | 0.23 | EFB2_01603 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | low | > 86 |
| Escherichia coli ECOR38 | 0.86 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | 0.24 | HEPCGN_03130 | vioA | dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA | — | — |
| Escherichia coli ECRC62 | 0.86 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | 0.22 | BNILDI_13535 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 75 |
| Pantoea sp. MT58 | 0.85 | IAI47_15635 | | RNA polymerase-binding protein DksA | 0.25 | IAI47_21625 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 76 |
| Dickeya dianthicola ME23 | 0.85 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | 0.25 | DZA65_RS22610 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | — | — |
| Pantoea agglomerans CFBP13505 P0401 | 0.85 | PagCFBP13505_RS13365 | | RNA polymerase-binding protein DksA | 0.25 | PagCFBP13505_RS12240 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.85 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | 0.26 | HGI48_RS21625 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 71 |
| Klebsiella michiganensis M5al | 0.84 | BWI76_RS05015 | | transcriptional regulator | 0.23 | BWI76_RS26485 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.83 | HER17_RS05580 | | RNA polymerase-binding protein DksA | 0.24 | HER17_RS06520 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 75 |
| Shewanella loihica PV-4 | 0.83 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.20 | Shew_1319 | | DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.82 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.23 | Shewana3_1303 | | polysaccharide biosynthesis protein (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.82 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.27 | Sama_2329 | | pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.70 | MIT1002_03690 | | DnaK suppressor protein | 0.22 | MIT1002_01078 | | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | low | > 70 |
| Pseudomonas aeruginosa MRSN321 | 0.70 | DY961_RS09350 | dksA;go_function=enzyme | RNA polymerase-binding protein DksA | 0.25 | DY961_RS15250 | arnB;go_function=transaminase | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.70 | DQ20_RS52680 | dksA;go_function=enzyme | RNA polymerase-binding protein DksA | 0.25 | DQ20_RS41895 | arnB;go_function=transaminase | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.70 | IKLFDK_30000 | | RNA polymerase-binding protein DksA | 0.25 | IKLFDK_18130 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 98 |
| Pseudomonas orientalis W4I3 | 0.69 | QF045_RS26135 | | RNA polymerase-binding protein DksA | 0.21 | QF045_RS01615 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | low | > 93 |
| Pseudomonas lactucae CFBP13502 | 0.69 | GEMAOFIL_04926 | | RNA polymerase-binding transcription factor DksA | 0.21 | GEMAOFIL_05587 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | low | > 96 |
| Pseudomonas simiae WCS417 | 0.69 | PS417_23875 | | molecular chaperone DnaK | 0.21 | PS417_27245 | | aminotransferase DegT | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.68 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | 0.22 | Pf1N1B4_3586 | | DegT/DnrJ/EryC1/StrS aminotransferase | — | — |
| Pseudomonas sp. DMC3 | 0.68 | GFF4034 | | RNA polymerase-binding transcription factor DksA | 0.21 | GFF2433 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | low | > 89 |
| Pseudomonas sp. RS175 | 0.68 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.23 | PFR28_00919 | | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.68 | AO356_16095 | | molecular chaperone DnaK | 0.22 | AO356_03965 | | aminotransferase | low | > 104 |
| Pseudomonas stutzeri RCH2 | 0.68 | Psest_1003 | | RNA polymerase-binding protein DksA | 0.22 | Psest_1811 | | UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.68 | AO353_14420 | | molecular chaperone DnaK | 0.25 | AO353_25530 | | UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase | low | > 101 |
| Pseudomonas sp. BP01 | 0.68 | JOY50_RS27695 | dksA | RNA polymerase-binding protein DksA | 0.22 | JOY50_RS13135 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | low | > 84 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.67 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.23 | Psyr_2689 | | DegT/DnrJ/EryC1/StrS aminotransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.67 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.23 | Psyr_2689 | | DegT/DnrJ/EryC1/StrS aminotransferase | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.67 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | 0.37 | PfGW456L13_4375 | | perosamine synthetase | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.67 | COO64_RS15070 | dksA | RNA polymerase-binding protein DksA | 0.22 | COO64_RS21480 | vioA | dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA | low | > 93 |
| Marinobacter adhaerens HP15 | 0.63 | HP15_332 | | transcriptional regulator, TraR/DksA family | 0.23 | HP15_2398 | | aminotransferase, DegT/DnrJ/EryC1/StrS family | — | — |
| Methylophilus sp. DMC18 | 0.58 | GFF2238 | | RNA polymerase-binding transcription factor DksA | 0.22 | GFF528 | | dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose transaminase | — | — |
| Dechlorosoma suillum PS | 0.56 | Dsui_2717 | | RNA polymerase-binding protein DksA | 0.23 | Dsui_1769 | | putative PLP-dependent enzyme possibly involved in cell wall biogenesis | low | > 51 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.34 | A4249_RS08530 | | RNA polymerase-binding protein DksA | 0.19 | A4249_RS13795 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | — | — |
| Caulobacter crescentus NA1000 | 0.34 | CCNA_02663 | | DnaK suppressor protein DksA | 0.41 | CCNA_01064 | | perosamine synthetase | 0.58 | 51 |
| Caulobacter crescentus NA1000 Δfur | 0.34 | CCNA_02663 | | DnaK suppressor protein DksA | 0.41 | CCNA_01064 | | perosamine synthetase | low | > 67 |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS05100 | | RNA polymerase-binding protein DksA | 0.36 | ABZR87_RS22110 | | DegT/DnrJ/EryC1/StrS family aminotransferase | low | > 80 |
| Sphingomonas koreensis DSMZ 15582 | 0.32 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | 0.20 | Ga0059261_3110 | | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | — | — |
| Phaeobacter inhibens DSM 17395 | 0.32 | PGA1_c11040 | | dnaK suppressor protein DksA | 0.22 | PGA1_c05070 | | putative pyridoxal-phosphate-dependent aminotransferase | low | > 62 |
| Bosea sp. OAE506 | 0.31 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | 0.17 | ABIE41_RS03045 | | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 77 |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | 0.22 | ABCV34_RS12945 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | 0.21 | Rru_A2746 | | DegT/DnrJ/EryC1/StrS aminotransferase (NCBI) | low | > 58 |
Not shown: 13 genomes with orthologs for CSW01_03155 only; 37 genomes with orthologs for CSW01_01285 only