| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Klebsiella michiganensis M5al | 1.0 | BWI76_RS06780 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 1.0 | BWI76_RS20925 | | peptidase M48 | 0.40 | 14 |
| Enterobacter sp. TBS_079 | 0.87 | MPMX20_01065 | | Multidrug efflux pump subunit AcrA | 0.86 | MPMX20_03344 | | Beta-barrel assembly-enhancing protease | 0.32 | 82 |
| Enterobacter asburiae PDN3 | 0.84 | EX28DRAFT_2495 | | RND family efflux transporter, MFP subunit | 0.87 | EX28DRAFT_0178 | | Putative Zn-dependent protease, contains TPR repeats | low | > 76 |
| Escherichia coli ECRC62 | 0.83 | BNILDI_22550 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.86 | BNILDI_12295 | bepA | beta-barrel assembly-enhancing protease | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.83 | OHPLBJKB_03211 | | Multidrug efflux pump subunit AcrA | 0.86 | OHPLBJKB_01232 | | Beta-barrel assembly-enhancing protease | 0.61 | 6 |
| Escherichia coli ECRC100 | 0.83 | OKFHMN_08200 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.86 | OKFHMN_21835 | bepA | beta-barrel assembly-enhancing protease | low | > 80 |
| Escherichia coli BL21 | 0.83 | ECD_00414 | | multidrug efflux system | 0.86 | ECD_02386 | | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic | — | — |
| Escherichia coli BW25113 | 0.83 | b0463 | acrA | multidrug efflux system (NCBI) | 0.86 | b2494 | yfgC | predicted peptidase (NCBI) | 0.49 | 3 |
| Escherichia coli ECRC99 | 0.83 | KEDOAH_19765 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.86 | KEDOAH_06385 | bepA | beta-barrel assembly-enhancing protease | — | — |
| Escherichia coli ECRC102 | 0.83 | NIAGMN_06255 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.86 | NIAGMN_19605 | bepA | beta-barrel assembly-enhancing protease | — | — |
| Escherichia coli ECRC101 | 0.83 | MCAODC_27425 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.86 | MCAODC_12365 | bepA | beta-barrel assembly-enhancing protease | low | > 87 |
| Escherichia coli ECRC98 | 0.83 | JDDGAC_11850 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.86 | JDDGAC_25780 | bepA | beta-barrel assembly-enhancing protease | low | > 86 |
| Escherichia coli ECOR27 | 0.83 | NOLOHH_01135 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.86 | NOLOHH_13485 | bepA | beta-barrel assembly-enhancing protease | low | > 75 |
| Escherichia coli Nissle 1917 | 0.82 | ECOLIN_RS02755 | | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.86 | ECOLIN_RS14165 | | beta-barrel assembly-enhancing protease | — | — |
| Escherichia fergusonii Becca | 0.82 | EFB2_03595 | | Multidrug efflux pump subunit AcrA | 0.86 | EFB2_01404 | | Beta-barrel assembly-enhancing protease | low | > 86 |
| Escherichia coli ECOR38 | 0.82 | HEPCGN_06815 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.85 | HEPCGN_21000 | bepA | beta-barrel assembly-enhancing protease | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.78 | GFF4380 | | Membrane fusion protein of RND family multidrug efflux pump | 0.86 | GFF2175 | | Exported zinc metalloprotease YfgC precursor | low | > 78 |
| Pantoea sp. MT58 | 0.74 | IAI47_14510 | | efflux RND transporter periplasmic adaptor subunit | 0.72 | IAI47_05205 | | M48 family metallopeptidase | low | > 76 |
| Rahnella sp. WP5 | 0.74 | EX31_RS22475 | | efflux RND transporter periplasmic adaptor subunit | 0.68 | EX31_RS22720 | | M48 family metallopeptidase | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.74 | LU632_RS18180 | | efflux RND transporter periplasmic adaptor subunit | 0.70 | LU632_RS08305 | | M48 family metallopeptidase | — | — |
| Serratia liquefaciens MT49 | 0.74 | IAI46_05190 | | multidrug efflux RND transporter periplasmic adaptor subunit SdeX | 0.69 | IAI46_18840 | | M48 family metallopeptidase | low | > 86 |
| Dickeya dadantii 3937 | 0.71 | DDA3937_RS05740 | | efflux RND transporter periplasmic adaptor subunit | 0.67 | DDA3937_RS06050 | | M48 family metallopeptidase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.69 | HGI48_RS05795 | | efflux RND transporter periplasmic adaptor subunit | 0.67 | HGI48_RS06095 | | M48 family metallopeptidase | low | > 71 |
| Dickeya dianthicola ME23 | 0.69 | DZA65_RS06120 | | efflux RND transporter periplasmic adaptor subunit | 0.67 | DZA65_RS06445 | | M48 family metallopeptidase | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.68 | HER17_RS15735 | | efflux RND transporter periplasmic adaptor subunit | 0.69 | HER17_RS15440 | | M48 family metallopeptidase | low | > 75 |
| Pseudomonas fluorescens FW300-N2E2 | 0.51 | Pf6N2E2_2823 | | Multidrug efflux RND membrane fusion protein MexC | 0.23 | Pf6N2E2_2752 | | Exported zinc metalloprotease YfgC precursor | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_04875 | | antibiotic transporter | 0.22 | AO356_04555 | | peptidase M48 | 0.43 | 39 |
| Pseudomonas syringae pv. syringae B728a | 0.51 | Psyr_4007 | | Secretion protein HlyD | 0.22 | Psyr_1543 | | Peptidase M48, Ste24p | 0.45 | 11 |
| Pseudomonas sp. RS175 | 0.51 | PFR28_00632 | | putative efflux pump periplasmic linker TtgA | 0.23 | PFR28_00694 | | Beta-barrel assembly-enhancing protease | 0.21 | 43 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.51 | Psyr_4007 | | Secretion protein HlyD | 0.22 | Psyr_1543 | | Peptidase M48, Ste24p | low | > 86 |
| Pseudomonas sp. S08-1 | 0.50 | OH686_16045 | | Multidrug efflux system, membrane fusion component | 0.22 | OH686_19195 | | Exported zinc metalloprotease YfgC precursor | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.48 | Psest_0309 | | RND family efflux transporter, MFP subunit | 0.22 | Psest_1510 | | Putative Zn-dependent protease, contains TPR repeats | 0.42 | 3 |
| Pseudomonas fluorescens GW456-L13 | 0.48 | PfGW456L13_4580 | | Multidrug efflux RND membrane fusion protein MexC | 0.21 | PfGW456L13_4512 | | Exported zinc metalloprotease YfgC precursor | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.48 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | 0.21 | PFLU_RS07250 | | M48 family metallopeptidase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.48 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | 0.21 | PFLU_RS07250 | | M48 family metallopeptidase | 0.47 | 15 |
| Pseudomonas simiae WCS417 | 0.48 | PS417_06775 | | antibiotic transporter | 0.21 | PS417_07140 | | peptidase M48 | 0.39 | 51 |
| Pseudomonas putida KT2440 | 0.48 | PP_1386 | | Probable efflux pump periplasmic linker TtgA | 0.23 | PP_1232 | | conserved exported protein of unknown function | 0.40 | 12 |
| Pseudomonas fluorescens FW300-N1B4 | 0.48 | Pf1N1B4_3247 | | Multidrug efflux RND membrane fusion protein MexC | 0.21 | Pf1N1B4_3327 | | Exported zinc metalloprotease YfgC precursor | — | — |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS06810 | | hemolysin D | 0.19 | HSERO_RS03305 | | peptidase M48 | low | > 78 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_17300 | | antibiotic transporter | 0.22 | AO353_17645 | | peptidase M48 | 0.38 | 52 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS29870 | | efflux RND transporter periplasmic adaptor subunit | 0.14 | QEN71_RS02380 | | M48 family metalloprotease | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS34600 | | hemolysin D | 0.14 | BPHYT_RS16315 | | peptidase M48 Ste24p | low | > 109 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS18280 | | efflux RND transporter periplasmic adaptor subunit | 0.19 | ABZR86_RS00725 | | M48 family metalloprotease | low | > 74 |
| Shewanella amazonensis SB2B | 0.44 | Sama_3553 | | multidrug resistance protein AcrA/AcrE family (RefSeq) | 0.37 | Sama_1913 | | peptidase M48, Ste24p (RefSeq) | 0.48 | 30 |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS19790 | | efflux RND transporter periplasmic adaptor subunit | 0.16 | RALBFv3_RS12125 | | peptidase M48 | low | > 76 |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS19385 | | efflux RND transporter periplasmic adaptor subunit | 0.16 | UW163_RS01485 | | peptidase M48 | — | — |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS05310 | | efflux RND transporter periplasmic adaptor subunit | 0.16 | ABZR87_RS08020 | | M48 family metalloprotease | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS21035 | | efflux RND transporter periplasmic adaptor subunit | 0.16 | RS_RS02810 | | peptidase M48 | low | > 80 |
| Shewanella oneidensis MR-1 | 0.44 | SO4693 | | multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) | 0.39 | SO2869 | | conserved hypothetical protein (NCBI ptt file) | 0.35 | 41 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_4046 | | RND family efflux transporter MFP subunit (RefSeq) | 0.39 | Shewana3_1649 | | peptidase M48, Ste24p (RefSeq) | 0.49 | 9 |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS23900 | | efflux RND transporter periplasmic adaptor subunit | 0.16 | RPSI07_RS21205 | | peptidase M48 | low | > 81 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_00690 | | Multidrug efflux pump subunit AcrA | 0.18 | MPMX26_01126 | | Beta-barrel assembly-enhancing protease | — | — |
| Variovorax sp. OAS795 | 0.38 | ABID97_RS00320 | | efflux RND transporter periplasmic adaptor subunit | 0.13 | ABID97_RS02095 | | M48 family metalloprotease | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_4449 | | RND efflux system, membrane fusion protein CmeA | 0.12 | Ac3H11_1239 | | Peptidase M48, Ste24p precursor | 0.53 | 3 |
| Rhodanobacter sp. FW510-T8 | 0.34 | OKGIIK_09165 | acrA | efflux transporter periplasmic adaptor subunit | 0.18 | OKGIIK_03795 | | Putative beta-barrel assembly-enhancing protease | low | > 52 |
| Kangiella aquimarina DSM 16071 | 0.33 | B158DRAFT_0734 | | RND family efflux transporter, MFP subunit | 0.25 | B158DRAFT_2440 | | Putative Zn-dependent protease, contains TPR repeats | low | > 40 |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS04230 | | efflux RND transporter periplasmic adaptor subunit | 0.14 | ABCV34_RS07945 | | M48 family metalloprotease | low | > 48 |
| Rhodanobacter denitrificans FW104-10B01 | 0.31 | LRK54_RS02095 | | efflux RND transporter periplasmic adaptor subunit | 0.19 | LRK54_RS15035 | | M48 family metalloprotease | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.31 | LRK55_RS01870 | | efflux RND transporter periplasmic adaptor subunit | 0.19 | LRK55_RS14750 | | M48 family metalloprotease | low | > 63 |
Not shown: 15 genomes with orthologs for BWI76_RS06780 only; 7 genomes with orthologs for BWI76_RS20925 only