Conservation of cofitness between Atu0035 and Atu4096 in Agrobacterium fabrum C58

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0035 phosphoenolpyruvate carboxykinase 1.0 Atu4096 nicotinate-nucleotide pyrophosphorylase 0.51 18
Rhizobium sp. OAE497 0.80 ABIE40_RS19415 phosphoenolpyruvate carboxykinase 0.82 ABIE40_RS23265 carboxylating nicotinate-nucleotide diphosphorylase low > 107
Sinorhizobium meliloti 1021 0.80 SMc02562 phosphoenolpyruvate carboxykinase 0.49 SMc02598 nicotinate-nucleotide pyrophosphorylase carboxylating protein low > 103
Rhodopseudomonas palustris CGA009 0.69 TX73_001865 phosphoenolpyruvate carboxykinase 0.51 TX73_005415 carboxylating nicotinate-nucleotide diphosphorylase — —
Bosea sp. OAE506 0.67 ABIE41_RS02665 phosphoenolpyruvate carboxykinase 0.42 ABIE41_RS02500 carboxylating nicotinate-nucleotide diphosphorylase low > 77
Sphingomonas koreensis DSMZ 15582 0.63 Ga0059261_0913 phosphoenolpyruvate carboxykinase (ATP) 0.40 Ga0059261_0061 nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) — —
Phaeobacter inhibens DSM 17395 0.63 PGA1_c01140 phosphoenolpyruvate carboxykinase 0.50 PGA1_c27810 nicotinate-nucleotide pyrophosphorylase low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.51 CA264_05270 phosphoenolpyruvate carboxykinase (ATP) 0.40 CA264_16940 nicotinate-nucleotide diphosphorylase (carboxylating) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_2957 phosphoenolpyruvate carboxykinase (ATP) 0.36 Echvi_1158 nicotinate-nucleotide pyrophosphorylase — —
Shewanella amazonensis SB2B 0.47 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) 0.35 Sama_0371 nicotinate-nucleotide diphosphorylase (carboxylating) (RefSeq) — —
Pedobacter sp. GW460-11-11-14-LB5 0.47 CA265_RS23490 phosphoenolpyruvate carboxykinase (ATP) 0.40 CA265_RS14530 nicotinate-nucleotide diphosphorylase (carboxylating) low > 88
Fusobacterium nucleatum SB010 0.47 HUW76_06485 phosphoenolpyruvate carboxykinase (ATP) 0.36 HUW76_10730 carboxylating nicotinate-nucleotide diphosphorylase low > 35
Shewanella loihica PV-4 0.46 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) 0.33 Shew_3435 nicotinate-nucleotide pyrophosphorylase (RefSeq) — —
Shewanella sp. ANA-3 0.45 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) 0.31 Shewana3_0422 nicotinate-nucleotide pyrophosphorylase [carboxylating] (RefSeq) — —
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_2395 phosphoenolpyruvate carboxykinase (ATP) 0.34 B158DRAFT_2135 nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) — —
Escherichia fergusonii Becca 0.44 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) 0.33 EFB2_03940 Nicotinate-nucleotide pyrophosphorylase [carboxylating] low > 86
Escherichia coli BL21 0.44 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] 0.33 ECD_00108 quinolinate phosphoribosyltransferase low > 60
Escherichia coli ECRC62 0.44 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) 0.33 BNILDI_08735 nadC carboxylating nicotinate-nucleotide diphosphorylase — —
Escherichia coli ECOR27 0.44 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) 0.33 NOLOHH_02875 nadC carboxylating nicotinate-nucleotide diphosphorylase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) 0.33 OHPLBJKB_03552 Nicotinate-nucleotide pyrophosphorylase [carboxylating] low > 73
Escherichia coli BW25113 0.44 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) 0.33 b0109 nadC nicotinate-nucleotide pyrophosphorylase (NCBI) low > 76
Escherichia coli Nissle 1917 0.44 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) 0.33 ECOLIN_RS00585 carboxylating nicotinate-nucleotide diphosphorylase low > 52
Escherichia coli ECOR38 0.44 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) 0.33 HEPCGN_08510 nadC carboxylating nicotinate-nucleotide diphosphorylase low > 85
Escherichia coli ECRC99 0.44 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) 0.33 KEDOAH_17625 nadC carboxylating nicotinate-nucleotide diphosphorylase — —
Serratia liquefaciens MT49 0.44 IAI46_10700 phosphoenolpyruvate carboxykinase (ATP) 0.32 IAI46_03530 carboxylating nicotinate-nucleotide diphosphorylase low > 86
Escherichia coli ECRC101 0.44 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) 0.33 MCAODC_01045 nadC carboxylating nicotinate-nucleotide diphosphorylase — —
Escherichia coli ECRC102 0.44 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) 0.33 NIAGMN_08380 nadC carboxylating nicotinate-nucleotide diphosphorylase — —
Escherichia coli ECRC98 0.44 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) 0.33 JDDGAC_14125 nadC carboxylating nicotinate-nucleotide diphosphorylase — —
Escherichia coli ECRC101 0.44 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) 0.33 OKFHMN_10530 nadC carboxylating nicotinate-nucleotide diphosphorylase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.37 GFF130 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) low > 78
Erwinia tracheiphila SCR3 0.44 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) 0.34 LU632_RS03040 nadC carboxylating nicotinate-nucleotide diphosphorylase low > 74
Pantoea sp. MT58 0.43 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) 0.32 IAI47_15845 carboxylating nicotinate-nucleotide diphosphorylase low > 76
Alteromonas macleodii MIT1002 0.43 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] 0.36 MIT1002_03008 Nicotinate-nucleotide pyrophosphorylase [carboxylating] — —
Rahnella sp. WP5 0.43 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) 0.34 EX31_RS03515 carboxylating nicotinate-nucleotide diphosphorylase low > 89
Dickeya dianthicola 67-19 0.43 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) 0.36 HGI48_RS17890 carboxylating nicotinate-nucleotide diphosphorylase low > 71
Dickeya dianthicola ME23 0.43 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) 0.35 DZA65_RS19035 carboxylating nicotinate-nucleotide diphosphorylase low > 75
Pectobacterium carotovorum WPP14 0.43 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) 0.35 HER17_RS03250 carboxylating nicotinate-nucleotide diphosphorylase low > 75
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) 0.35 EX28DRAFT_3702 nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) low > 76
Enterobacter sp. TBS_079 0.43 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) 0.34 MPMX20_00800 Nicotinate-nucleotide pyrophosphorylase [carboxylating] 0.28 16
Dickeya dadantii 3937 0.43 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) 0.37 DDA3937_RS17955 carboxylating nicotinate-nucleotide diphosphorylase low > 74
Klebsiella michiganensis M5al 0.43 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) 0.34 BWI76_RS04845 nicotinate-nucleotide pyrophosphorylase low > 92
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 0.35 CSW01_12265 carboxylating nicotinate-nucleotide diphosphorylase 0.90 28
Pseudomonas stutzeri RCH2 0.41 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) 0.37 Psest_0718 nicotinate-nucleotide pyrophosphorylase 0.55 1
Pseudomonas sp. S08-1 0.41 OH686_11060 phosphoenolpyruvate carboxykinase (ATP) 0.35 OH686_16520 nicotinate-nucleotide diphosphorylase (carboxylating) 0.67 4
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS06685 phosphoenolpyruvate carboxykinase (ATP) 0.41 ABI39_RS11900 carboxylating nicotinate-nucleotide diphosphorylase — —
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS10065 phosphoenolpyruvate carboxykinase (ATP) 0.41 HMPREF1058_RS15940 carboxylating nicotinate-nucleotide diphosphorylase — —
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS07235 phosphoenolpyruvate carboxykinase (ATP) 0.39 HMPREF1078_RS16725 carboxylating nicotinate-nucleotide diphosphorylase — —
Marinobacter adhaerens HP15 0.40 HP15_3498 phosphoenolpyruvate carboxykinase (ATP) 0.36 HP15_1305 nicotinate-nucleotide pyrophosphorylase — —
Bacteroides thetaiotaomicron VPI-5482 0.39 BT2790 phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) 0.38 BT1560 nicotinate-nucleotide pyrophosphorylase (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS01170 phosphoenolpyruvate carboxykinase (ATP) 0.38 HMPREF1181_RS10745 carboxylating nicotinate-nucleotide diphosphorylase — —
Pseudomonas sp. RS175 0.39 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) 0.38 PFR28_00098 Nicotinate-nucleotide pyrophosphorylase [carboxylating] 0.40 16
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.38 Pf1N1B4_1153 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) — —
Bacteroides ovatus ATCC 8483 0.39 BACOVA_02011 phosphoenolpyruvate carboxykinase (ATP) 0.38 BACOVA_04303 nicotinate-nucleotide diphosphorylase (carboxylating) — —
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] 0.36 AO353_05520 nicotinate-nucleotide pyrophosphorylase low > 101
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.35 PfGW456L13_5082 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) 0.48 6
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.39 Psyr_0815 nicotinate-nucleotide pyrophosphorylase (carboxylating) low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.39 Psyr_0815 nicotinate-nucleotide pyrophosphorylase (carboxylating) 0.54 43
Pseudomonas simiae WCS417 0.38 PS417_01210 hypothetical protein 0.38 PS417_03925 nicotinate-nucleotide pyrophosphorylase 0.45 6
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] 0.35 AO356_07370 nicotinate-nucleotide pyrophosphorylase low > 104
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.35 Pf6N2E2_3346 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) 0.47 3
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.38 PFLU_RS03970 carboxylating nicotinate-nucleotide diphosphorylase low > 109
Pseudomonas fluorescens SBW25 0.38 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.38 PFLU_RS03970 carboxylating nicotinate-nucleotide diphosphorylase low > 109

Not shown: 2 genomes with orthologs for Atu0035 only; 38 genomes with orthologs for Atu4096 only