| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu0332 | | RNA polymerase sigma-54 factor | 1.0 | Atu0035 | | phosphoenolpyruvate carboxykinase | 0.42 | 12 |
| Rhizobium sp. OAE497 | 0.69 | ABIE40_RS01860 | | RNA polymerase factor sigma-54 | 0.80 | ABIE40_RS19415 | | phosphoenolpyruvate carboxykinase | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.64 | SMc01139 | | RNA polymerase factor sigma-54 | 0.80 | SMc02562 | | phosphoenolpyruvate carboxykinase | low | > 103 |
| Rhodopseudomonas palustris CGA009 | 0.51 | TX73_000260 | | RNA polymerase factor sigma-54 | 0.69 | TX73_001865 | | phosphoenolpyruvate carboxykinase | — | — |
| Bosea sp. OAE506 | 0.48 | ABIE41_RS00125 | | RNA polymerase factor sigma-54 | 0.67 | ABIE41_RS02665 | | phosphoenolpyruvate carboxykinase | low | > 77 |
| Sphingomonas koreensis DSMZ 15582 | 0.39 | Ga0059261_2543 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.63 | Ga0059261_0913 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 68 |
| Marinobacter adhaerens HP15 | 0.31 | HP15_2442 | | RNA polymerase, sigma 54 subunit, RpoN | 0.40 | HP15_3498 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pseudomonas simiae WCS417 | 0.29 | PS417_04345 | | RNA polymerase factor sigma-54 | 0.38 | PS417_01210 | | hypothetical protein | — | — |
| Pseudomonas stutzeri RCH2 | 0.29 | Psest_3313 | | RNA polymerase sigma-54 factor | 0.41 | Psest_3988 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_05180 | | RNA polymerase sigma-54 factor | 0.39 | AO353_11775 | | phosphoenolpyruvate carboxykinase [ATP] | — | — |
| Pseudomonas fluorescens SBW25 | 0.29 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.38 | PFLU_RS01320 | | phosphoenolpyruvate carboxykinase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.29 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.38 | PFLU_RS01320 | | phosphoenolpyruvate carboxykinase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.38 | Psyr_0168 | | Phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.38 | Psyr_0168 | | Phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pseudomonas sp. S08-1 | 0.29 | OH686_08540 | | RNA polymerase sigma-54 factor | 0.41 | OH686_11060 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.29 | AO356_07035 | | RNA polymerase sigma-54 factor | 0.38 | AO356_10140 | | phosphoenolpyruvate carboxykinase [ATP] | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | 0.44 | GFF615 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | low | > 78 |
| Dickeya dianthicola 67-19 | 0.28 | HGI48_RS01445 | | RNA polymerase factor sigma-54 | 0.43 | HGI48_RS19740 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 71 |
| Escherichia coli BW25113 | 0.28 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | 0.44 | b3403 | pck | phosphoenolpyruvate carboxykinase (NCBI) | — | — |
| Escherichia coli ECOR27 | 0.28 | NOLOHH_09740 | rpoN | RNA polymerase factor sigma-54 | 0.44 | NOLOHH_08835 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECRC101 | 0.28 | OKFHMN_17940 | rpoN | RNA polymerase factor sigma-54 | 0.44 | OKFHMN_17045 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECRC101 | 0.28 | MCAODC_08460 | rpoN | RNA polymerase factor sigma-54 | 0.44 | MCAODC_07575 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECRC99 | 0.28 | KEDOAH_10210 | rpoN | RNA polymerase factor sigma-54 | 0.44 | KEDOAH_11095 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECOR38 | 0.28 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | 0.44 | HEPCGN_15865 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECRC98 | 0.28 | JDDGAC_21565 | rpoN | RNA polymerase factor sigma-54 | 0.44 | JDDGAC_20675 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.28 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | 0.44 | OHPLBJKB_00300 | | Phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECRC102 | 0.28 | NIAGMN_15700 | rpoN | RNA polymerase factor sigma-54 | 0.44 | NIAGMN_14815 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Dickeya dianthicola ME23 | 0.28 | DZA65_RS01510 | | RNA polymerase factor sigma-54 | 0.43 | DZA65_RS20830 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 75 |
| Pseudomonas fluorescens GW456-L13 | 0.28 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | 0.38 | PfGW456L13_420 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | — | — |
| Escherichia fergusonii Becca | 0.28 | EFB2_00621 | | RNA polymerase sigma-54 factor | 0.44 | EFB2_00425 | | Phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli BL21 | 0.28 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | 0.44 | ECD_03255 | | phosphoenolpyruvate carboxykinase [ATP] | low | > 60 |
| Escherichia coli ECRC62 | 0.28 | BNILDI_01795 | rpoN | RNA polymerase factor sigma-54 | 0.44 | BNILDI_02685 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli Nissle 1917 | 0.28 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | 0.44 | ECOLIN_RS19435 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Enterobacter asburiae PDN3 | 0.28 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.43 | EX28DRAFT_4140 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.28 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | 0.38 | Pf6N2E2_3899 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.28 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | 0.39 | Pf1N1B4_1779 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | — | — |
| Alteromonas macleodii MIT1002 | 0.28 | MIT1002_00827 | | RNA polymerase sigma-54 factor 2 | 0.43 | MIT1002_03972 | | Phosphoenolpyruvate carboxykinase [ATP] | low | > 70 |
| Pseudomonas sp. RS175 | 0.28 | PFR28_00173 | | RNA polymerase sigma-54 factor | 0.39 | PFR28_04874 | | Phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Klebsiella michiganensis M5al | 0.28 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | 0.43 | BWI76_RS26155 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Dickeya dadantii 3937 | 0.28 | DDA3937_RS01530 | | RNA polymerase factor sigma-54 | 0.43 | DDA3937_RS19610 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 74 |
| Enterobacter sp. TBS_079 | 0.28 | MPMX20_04108 | | RNA polymerase sigma-54 factor | 0.43 | MPMX20_04290 | | Phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Erwinia tracheiphila SCR3 | 0.27 | LU632_RS21280 | rpoN | RNA polymerase factor sigma-54 | 0.44 | LU632_RS22930 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pectobacterium carotovorum WPP14 | 0.27 | HER17_RS20060 | | RNA polymerase factor sigma-54 | 0.43 | HER17_RS01710 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 75 |
| Rahnella sp. WP5 | 0.27 | EX31_RS12400 | | RNA polymerase factor sigma-54 | 0.43 | EX31_RS04780 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 89 |
| Pantoea sp. MT58 | 0.27 | IAI47_17185 | | RNA polymerase factor sigma-54 | 0.43 | IAI47_01830 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 76 |
| Shewanella amazonensis SB2B | 0.27 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | 0.47 | Sama_0165 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.27 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | 0.45 | SO0162 | pckA | phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | 0.45 | Shewana3_0147 | | phosphoenolpyruvate carboxykinase (RefSeq) | low | > 73 |
| Serratia liquefaciens MT49 | 0.26 | IAI46_22470 | | RNA polymerase factor sigma-54 | 0.44 | IAI46_10700 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.26 | CSW01_12815 | | RNA polymerase sigma-54 factor | 0.42 | CSW01_13810 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 62 |
| Shewanella loihica PV-4 | 0.26 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | 0.46 | Shew_3623 | | phosphoenolpyruvate carboxykinase (RefSeq) | low | > 60 |
| Kangiella aquimarina DSM 16071 | 0.21 | B158DRAFT_2080 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.45 | B158DRAFT_2395 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 40 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.20 | Echvi_0071 | | RNA polymerase sigma-54 factor | 0.49 | Echvi_2957 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.19 | CA265_RS11005 | | RNA polymerase sigma-54 factor | 0.47 | CA265_RS23490 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.19 | CA264_18070 | | RNA polymerase sigma-54 factor | 0.51 | CA264_05270 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Parabacteroides merdae CL09T00C40 | 0.18 | HMPREF1078_RS05920 | | RNA polymerase factor sigma-54 | 0.40 | HMPREF1078_RS07235 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Bacteroides stercoris CC31F | 0.17 | HMPREF1181_RS00925 | | RNA polymerase factor sigma-54 | 0.39 | HMPREF1181_RS01170 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.16 | BACOVA_01616 | | RNA polymerase sigma-54 factor | 0.39 | BACOVA_02011 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Phocaeicola dorei CL03T12C01 | 0.16 | ABI39_RS04230 | | RNA polymerase factor sigma-54 | 0.41 | ABI39_RS06685 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.16 | BT2521 | | RNA polymerase sigma-54 (NCBI ptt file) | 0.39 | BT2790 | | phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.16 | HMPREF1058_RS12505 | | RNA polymerase factor sigma-54 | 0.41 | HMPREF1058_RS10065 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
Not shown: 35 genomes with orthologs for Atu0332 only; 3 genomes with orthologs for Atu0035 only