Conservation of cofitness between AO353_16875 and AO353_08470 in Pseudomonas fluorescens FW300-N2E3

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E3 1.0 AO353_16875 ribosomal protein S12 methylthiotransferase RimO 1.0 AO353_08470 RNA pyrophosphohydrolase 0.31 19
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_4653 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.99 PfGW456L13_952 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) low > 87
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_3160 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 1.00 Pf1N1B4_2283 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) low > 87
Pseudomonas sp. RS175 0.97 PFR28_00486 Ribosomal protein S12 methylthiotransferase RimO 0.98 PFR28_04831 RNA pyrophosphohydrolase low > 88
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_05600 ribosomal protein S12 methylthiotransferase RimO 0.99 AO356_10345 RNA pyrophosphohydrolase low > 104
Pseudomonas fluorescens SBW25 0.96 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.99 PFLU_RS28650 RNA pyrophosphohydrolase low > 109
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.99 PFLU_RS28650 RNA pyrophosphohydrolase low > 109
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_2978 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.99 Pf6N2E2_3941 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) low > 103
Pseudomonas simiae WCS417 0.96 PS417_05880 ribosomal protein S12 methylthiotransferase 0.99 PS417_26990 RNA pyrophosphohydrolase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.99 Psyr_4843 NUDIX hydrolase low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.99 Psyr_4843 NUDIX hydrolase low > 86
Pseudomonas putida KT2440 0.89 PP_1197 ribosomal protein S12 methylthiotransferase 0.98 PP_5146 RNA pyrophosphohydrolase low > 96
Pseudomonas sp. S08-1 0.85 OH686_18875 ribosomal protein S12 methylthiotransferase RimO 0.92 OH686_11425 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_2632 ribosomal protein S12 methylthiotransferase RimO 0.92 Psest_3863 NTP pyrophosphohydrolases including oxidative damage repair enzymes — —
Castellaniella sp019104865 MT123 0.77 ABCV34_RS14230 30S ribosomal protein S12 methylthiotransferase RimO 0.53 ABCV34_RS09820 RNA pyrophosphohydrolase low > 48
Erwinia tracheiphila SCR3 0.72 LU632_RS09580 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.69 LU632_RS06105 rppH RNA pyrophosphohydrolase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF731 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.70 GFF1312 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 0.62 55
Escherichia coli ECRC101 0.72 MCAODC_25275 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.70 MCAODC_10525 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECRC62 0.72 BNILDI_20690 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.70 BNILDI_10365 rppH RNA pyrophosphohydrolase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_02875 Ribosomal protein S12 methylthiotransferase RimO 0.70 OHPLBJKB_00900 RNA pyrophosphohydrolase — —
Escherichia coli BL21 0.72 ECD_00802 ribosomal protein S12 methylthiotransferase 0.70 ECD_02678 RNA pyrophosphohydrolase — —
Escherichia coli ECRC102 0.72 NIAGMN_04105 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.70 NIAGMN_17770 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECOR38 0.72 HEPCGN_01970 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.70 HEPCGN_19255 rppH RNA pyrophosphohydrolase low > 87
Escherichia coli BW25113 0.72 b0835 yliG predicted SAM-dependent methyltransferase (NCBI) 0.70 b2830 nudH dinucleoside polyphosphate hydrolase (NCBI) low > 76
Escherichia coli ECRC98 0.72 JDDGAC_09695 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.70 JDDGAC_23665 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECRC99 0.72 KEDOAH_21850 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.70 KEDOAH_08130 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECOR27 0.72 NOLOHH_22430 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.70 NOLOHH_11885 rppH RNA pyrophosphohydrolase — —
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2131 ribosomal protein S12 methylthiotransferase RimO 0.70 EX28DRAFT_2905 NTP pyrophosphohydrolases including oxidative damage repair enzymes — —
Escherichia coli Nissle 1917 0.72 ECOLIN_RS04440 30S ribosomal protein S12 methylthiotransferase RimO 0.70 ECOLIN_RS15880 RNA pyrophosphohydrolase — —
Escherichia fergusonii Becca 0.72 EFB2_03271 Ribosomal protein S12 methylthiotransferase RimO 0.70 EFB2_01054 RNA pyrophosphohydrolase — —
Klebsiella michiganensis M5al 0.72 BWI76_RS09115 30S ribosomal protein S12 methylthiotransferase RimO 0.69 BWI76_RS23275 RNA pyrophosphohydrolase — —
Escherichia coli ECRC100 0.72 OKFHMN_06060 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.70 OKFHMN_20000 rppH RNA pyrophosphohydrolase — —
Enterobacter sp. TBS_079 0.71 MPMX20_01473 Ribosomal protein S12 methylthiotransferase RimO 0.60 MPMX20_03693 RNA pyrophosphohydrolase — —
Dickeya dianthicola 67-19 0.71 HGI48_RS09400 30S ribosomal protein S12 methylthiotransferase RimO 0.69 HGI48_RS04955 RNA pyrophosphohydrolase — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS12755 30S ribosomal protein S12 methylthiotransferase RimO 0.68 HER17_RS16585 RNA pyrophosphohydrolase — —
Azospirillum brasilense Sp245 0.70 AZOBR_RS14980 ribosomal protein S12 methylthiotransferase 0.32 AZOBR_RS04025 RNA pyrophosphohydrolase low > 97
Dickeya dianthicola ME23 0.70 DZA65_RS09710 30S ribosomal protein S12 methylthiotransferase RimO 0.69 DZA65_RS05295 RNA pyrophosphohydrolase low > 75
Dickeya dadantii 3937 0.70 DDA3937_RS09385 30S ribosomal protein S12 methylthiotransferase RimO 0.69 DDA3937_RS04945 RNA pyrophosphohydrolase low > 74
Azospirillum sp. SherDot2 0.70 MPMX19_05761 Ribosomal protein S12 methylthiotransferase RimO 0.34 MPMX19_01945 RNA pyrophosphohydrolase low > 112
Rhodospirillum rubrum S1H 0.69 Rru_A2811 hypothetical protein (NCBI) 0.33 Rru_A1230 NUDIX hydrolase (NCBI) — —
Acinetobacter radioresistens SK82 0.69 MPMX26_01294 Ribosomal protein S12 methylthiotransferase RimO 0.71 MPMX26_00342 RNA pyrophosphohydrolase low > 36
Alteromonas macleodii MIT1002 0.68 MIT1002_01933 Ribosomal protein S12 methylthiotransferase RimO 0.66 MIT1002_00647 RNA pyrophosphohydrolase low > 70
Bosea sp. OAE506 0.66 ABIE41_RS15895 30S ribosomal protein S12 methylthiotransferase RimO 0.30 ABIE41_RS07545 RNA pyrophosphohydrolase — —
Magnetospirillum magneticum AMB-1 0.66 AMB_RS15345 30S ribosomal protein S12 methylthiotransferase RimO 0.32 AMB_RS01525 RNA pyrophosphohydrolase low > 64
Shewanella amazonensis SB2B 0.65 Sama_0485 MiaB-like putative RNA modifying enzyme YliG (RefSeq) 0.68 Sama_0863 dinucleoside polyphosphate hydrolase (RefSeq) — —
Dechlorosoma suillum PS 0.65 Dsui_2540 ribosomal protein S12 methylthiotransferase RimO 0.50 Dsui_1325 ADP-ribose pyrophosphatase low > 51
Rhodanobacter denitrificans MT42 0.64 LRK55_RS01560 30S ribosomal protein S12 methylthiotransferase RimO 0.64 LRK55_RS08860 RNA pyrophosphohydrolase low > 63
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS01780 30S ribosomal protein S12 methylthiotransferase RimO 0.64 LRK54_RS09330 RNA pyrophosphohydrolase low > 59
Shewanella sp. ANA-3 0.64 Shewana3_3627 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.66 Shewana3_3043 dinucleoside polyphosphate hydrolase (RefSeq) — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_04755 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.64 OKGIIK_15860 RNA pyrophosphohydrolase low > 52
Shewanella oneidensis MR-1 0.63 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) 0.66 SO1331 MutT/nudix family protein (NCBI ptt file) low > 76
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS08100 30S ribosomal protein S12 methylthiotransferase RimO 0.64 ABZR86_RS13805 RNA pyrophosphohydrolase low > 74
Rhodopseudomonas palustris CGA009 0.63 TX73_013865 30S ribosomal protein S12 methylthiotransferase RimO 0.28 TX73_000905 RNA pyrophosphohydrolase low > 86
Sphingomonas koreensis DSMZ 15582 0.62 Ga0059261_0282 ribosomal protein S12 methylthiotransferase RimO 0.31 Ga0059261_4001 NTP pyrophosphohydrolases including oxidative damage repair enzymes low > 68
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS15005 ribosomal protein S12 methylthiotransferase 0.51 HSERO_RS01825 RNA pyrophosphohydrolase low > 78
Dinoroseobacter shibae DFL-12 0.62 Dshi_2618 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.30 Dshi_0092 NUDIX hydrolase (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.59 PGA1_c24370 ribosomal protein S12 methylthiotransferase RimO 0.36 PGA1_c29090 RNA pyrophosphohydrolase RppH — —

Not shown: 31 genomes with orthologs for AO353_16875 only; 10 genomes with orthologs for AO353_08470 only