Conservation of cofitness between ABZR87_RS15675 and ABZR87_RS16180 in Ralstonia sp. UNC404CL21Col

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia sp. UNC404CL21Col 1.0 ABZR87_RS15675 NAD(P)/FAD-dependent oxidoreductase 1.0 ABZR87_RS16180 arginine/lysine/ornithine decarboxylase 0.41 13
Ralstonia solanacearum PSI07 0.87 RPSI07_RS13485 NAD(P)/FAD-dependent oxidoreductase 0.96 RPSI07_RS13045 lysine decarboxylase — —
Ralstonia solanacearum GMI1000 0.86 RS_RS11190 NAD(P)/FAD-dependent oxidoreductase 0.96 RS_RS11875 lysine decarboxylase — —
Ralstonia solanacearum IBSBF1503 0.86 RALBFv3_RS03745 NAD(P)/FAD-dependent oxidoreductase 0.96 RALBFv3_RS04325 lysine decarboxylase — —
Ralstonia solanacearum UW163 0.86 UW163_RS09925 NAD(P)/FAD-dependent oxidoreductase 0.96 UW163_RS09345 lysine decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.75 RR42_RS15045 pyridine nucleotide-disulfide oxidoreductase 0.88 RR42_RS15940 lysine decarboxylase — —
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS17890 NAD(P)/FAD-dependent oxidoreductase 0.79 QEN71_RS25000 arginine/lysine/ornithine decarboxylase — —
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_06021 NADH dehydrogenase 0.79 H281DRAFT_00160 ornithine decarboxylase — —
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS33605 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.79 BPHYT_RS04980 lysine decarboxylase — —
Paraburkholderia graminis OAS925 0.64 ABIE53_004853 NADH dehydrogenase 0.79 ABIE53_001270 arginine decarboxylase — —
Pseudomonas fluorescens FW300-N2E3 0.49 AO353_14255 NADH dehydrogenase 0.47 AO353_23560 lysine decarboxylase low > 101
Variovorax sp. OAS795 0.49 ABID97_RS26565 NAD(P)/FAD-dependent oxidoreductase 0.73 ABID97_RS16535 arginine/lysine/ornithine decarboxylase — —
Pseudomonas stutzeri RCH2 0.49 Psest_0715 NADH dehydrogenase, FAD-containing subunit 0.47 Psest_2075 Arginine/lysine/ornithine decarboxylases low > 67
Pseudomonas sp. S08-1 0.49 OH686_16450 NADH dehydrogenase 0.48 OH686_03560 Lysine decarboxylase, inducible low > 80
Rhodopseudomonas palustris CGA009 0.49 TX73_005675 NAD(P)/FAD-dependent oxidoreductase 0.30 TX73_010575 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein low > 86
Pseudomonas simiae WCS417 0.49 PS417_03855 NADH dehydrogenase 0.47 PS417_12240 lysine decarboxylase low > 88
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_1496 NADH dehydrogenase (EC 1.6.99.3) 0.47 PfGW456L13_3336 Lysine decarboxylase, inducible (EC 4.1.1.18) low > 87
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_2826 NADH dehydrogenase (EC 1.6.99.3) 0.47 Pf1N1B4_4600 Lysine decarboxylase, inducible (EC 4.1.1.18) low > 87
Pseudomonas putida KT2440 0.48 PP_0626 NADH dehydrogenase 0.45 PP_4140 lysine decarboxylase low > 96
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS03905 NAD(P)/FAD-dependent oxidoreductase 0.47 PFLU_RS12930 lysine decarboxylase low > 109
Pseudomonas fluorescens SBW25 0.48 PFLU_RS03905 NAD(P)/FAD-dependent oxidoreductase 0.47 PFLU_RS12930 lysine decarboxylase low > 109
Escherichia coli Nissle 1917 0.44 ECOLIN_RS06400 NADH-quinone dehydrogenase 0.34 ECOLIN_RS23825 arginine decarboxylase low > 55
Escherichia coli ECOR27 0.44 NOLOHH_21020 ndh NADH-quinone dehydrogenase 0.34 NOLOHH_04815 adiA arginine decarboxylase low > 75
Escherichia fergusonii Becca 0.44 EFB2_02866 NADH dehydrogenase 0.34 EFB2_04465 Biodegradative arginine decarboxylase low > 86
Escherichia coli BW25113 0.44 b1109 ndh respiratory NADH dehydrogenase 2/cupric reductase (NCBI) 0.34 b4117 adiA biodegradative arginine decarboxylase (RefSeq) low > 76
Escherichia coli ECOR38 0.44 HEPCGN_23990 ndh NADH-quinone dehydrogenase 0.34 HEPCGN_11185 adiA arginine decarboxylase low > 87
Escherichia coli ECRC62 0.44 BNILDI_19185 ndh NADH-quinone dehydrogenase 0.34 BNILDI_06675 adiA arginine decarboxylase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02557 NADH dehydrogenase 0.34 OHPLBJKB_03927 Biodegradative arginine decarboxylase low > 73
Pantoea sp. MT58 0.44 IAI47_11985 NAD(P)/FAD-dependent oxidoreductase 0.31 IAI47_15445 lysine decarboxylase LdcC low > 76
Rahnella sp. WP5 0.44 EX31_RS24510 NAD(P)/FAD-dependent oxidoreductase 0.31 EX31_RS12950 lysine decarboxylase LdcC low > 89
Escherichia coli BL21 0.44 ECD_01105 respiratory NADH dehydrogenase 2/cupric reductase 0.34 ECD_03988 arginine decarboxylase low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF3392 NADH dehydrogenase (EC 1.6.99.3) 0.34 GFF1473 Arginine decarboxylase, catabolic (EC 4.1.1.19) low > 78
Serratia liquefaciens MT49 0.44 IAI46_09910 NAD(P)/FAD-dependent oxidoreductase 0.32 IAI46_20145 lysine decarboxylase CadA low > 86
Escherichia coli ECRC101 0.43 MCAODC_22855 ndh NADH-quinone dehydrogenase 0.34 MCAODC_03060 adiA arginine decarboxylase low > 87
Escherichia coli ECRC102 0.43 NIAGMN_24335 ndh NADH-quinone dehydrogenase 0.34 NIAGMN_10395 adiA arginine decarboxylase — —
Escherichia coli ECRC99 0.43 KEDOAH_24260 ndh NADH-quinone dehydrogenase 0.34 KEDOAH_15615 adiA arginine decarboxylase — —
Escherichia coli ECRC98 0.43 JDDGAC_07155 ndh NADH-quinone dehydrogenase 0.34 JDDGAC_16185 adiA arginine decarboxylase 0.69 20
Escherichia coli ECRC100 0.43 OKFHMN_03495 ndh NADH-quinone dehydrogenase 0.34 OKFHMN_12550 adiA arginine decarboxylase low > 80
Klebsiella michiganensis M5al 0.42 BWI76_RS11175 NADH dehydrogenase 0.32 BWI76_RS07195 lysine decarboxylase CadA — —
Enterobacter asburiae PDN3 0.42 EX28DRAFT_1821 NADH dehydrogenase, FAD-containing subunit 0.31 EX28DRAFT_3774 Arginine/lysine/ornithine decarboxylases low > 76
Enterobacter sp. TBS_079 0.42 MPMX20_01790 NADH dehydrogenase 0.31 MPMX20_00870 Constitutive lysine decarboxylase low > 85
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_09465 NAD(P)/FAD-dependent oxidoreductase 0.32 CSW01_01445 lysine decarboxylase low > 62
Pectobacterium carotovorum WPP14 0.42 HER17_RS08735 NAD(P)/FAD-dependent oxidoreductase 0.22 HER17_RS16680 ornithine decarboxylase low > 75
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF4021 NADH dehydrogenase (EC 1.6.99.3) 0.74 GFF4333 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) low > 90
Shewanella amazonensis SB2B 0.35 Sama_0936 NADH dehydrogenase (RefSeq) 0.23 Sama_3334 ornithine decarboxylase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.34 SO3517 ndh NADH dehydrogenase (NCBI ptt file) 0.23 SO0314 speF ornithine decarboxylase, inducible (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.34 Shewana3_3123 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) 0.23 Shewana3_3871 ornithine decarboxylase (RefSeq) low > 73
Azospirillum brasilense Sp245 0.18 AZOBR_RS00545 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.29 AZOBR_RS27535 amino acid decarboxylase low > 97
Herbaspirillum seropedicae SmR1 0.16 HSERO_RS08760 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.78 HSERO_RS17280 lysine decarboxylase — —
Acidovorax sp. GW101-3H11 0.16 Ac3H11_2167 NADH dehydrogenase (EC 1.6.99.3) 0.74 Ac3H11_2914 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) — —
Variovorax sp. SCN45 0.14 GFF6814 NADH dehydrogenase (EC 1.6.99.3) 0.73 GFF232 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) low > 127
Castellaniella sp019104865 MT123 0.10 ABCV34_RS15045 FAD-dependent oxidoreductase 0.75 ABCV34_RS08900 arginine/lysine/ornithine decarboxylase — —

Not shown: 30 genomes with orthologs for ABZR87_RS15675 only; 6 genomes with orthologs for ABZR87_RS16180 only