Conservation of cofitness between ABZR87_RS09950 and ABZR87_RS16160 in Ralstonia sp. UNC404CL21Col

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia sp. UNC404CL21Col 1.0 ABZR87_RS09950 ribokinase 1.0 ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor 0.38 10
Ralstonia solanacearum GMI1000 0.82 RS_RS05015 ribokinase 0.74 RS_RS11855 DNA-directed RNA polymerase sigma-70 factor low > 80
Ralstonia solanacearum UW163 0.80 UW163_RS11700 ribokinase 0.77 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor — —
Ralstonia solanacearum IBSBF1503 0.80 RALBFv3_RS14235 ribokinase 0.77 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor — —
Ralstonia solanacearum PSI07 0.80 RPSI07_RS19230 ribokinase 0.80 RPSI07_RS13090 DNA-directed RNA polymerase sigma-70 factor low > 81
Pseudomonas simiae WCS417 0.51 PS417_18385 ribokinase 0.28 PS417_12610 RNA polymerase sigma factor — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_2155 Carbohydrate kinase, PfkB 0.24 Psyr_0362 Sigma-70 region 2 low > 86
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_2155 Carbohydrate kinase, PfkB 0.24 Psyr_0362 Sigma-70 region 2 low > 86
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS20695 ribokinase 0.49 BPHYT_RS22710 XRE family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.48 PFLU_RS20360 ribokinase 0.41 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor low > 109
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS20360 ribokinase 0.41 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor low > 109
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_165 Ribokinase (EC 2.7.1.15) 0.19 Pf6N2E2_4220 RNA polymerase sigma factor RpoE low > 103
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_20835 Ribokinase (EC 2.7.1.15) (from data) 0.41 AO353_07625 RNA polymerase subunit sigma-70 low > 101
Variovorax sp. SCN45 0.39 GFF2136 Ribokinase (EC 2.7.1.15) 0.49 GFF3817 RNA polymerase sigma factor low > 127
Bacteroides ovatus ATCC 8483 0.37 BACOVA_02050 ribokinase 0.17 BACOVA_05268 Sigma-70 region 2 low > 94
Variovorax sp. OAS795 0.37 ABID97_RS24775 ribokinase 0.49 ABID97_RS08165 sigma-70 family RNA polymerase sigma factor — —
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_14665 ribokinase 0.18 CSW01_11715 RNA polymerase subunit sigma low > 62
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS08510 ribokinase 0.31 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor low > 59
Rhodanobacter denitrificans MT42 0.34 LRK55_RS08275 ribokinase 0.20 LRK55_RS07240 sigma-70 family RNA polymerase sigma factor low > 63
Bacteroides stercoris CC31F 0.34 HMPREF1181_RS02060 ribokinase 0.17 HMPREF1181_RS04900 RNA polymerase sigma-70 factor low > 56
Shewanella sp. ANA-3 0.34 Shewana3_3477 ribokinase (RefSeq) 0.23 Shewana3_2465 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) low > 73
Rahnella sp. WP5 0.33 EX31_RS06190 ribokinase 0.34 EX31_RS18905 sigma-70 family RNA polymerase sigma factor low > 89
Enterobacter asburiae PDN3 0.33 EX28DRAFT_4028 ribokinase 0.32 EX28DRAFT_2390 RNA polymerase sigma factor, sigma-70 family low > 76
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_15305 rbsK ribokinase 0.31 OKGIIK_05040 RNA polymerase subunit sigma low > 52
Acidovorax sp. GW101-3H11 0.33 Ac3H11_1839 Ribokinase (EC 2.7.1.15) 0.46 Ac3H11_1622 RNA polymerase sigma factor low > 79
Bacteroides thetaiotaomicron VPI-5482 0.33 BT2803 ribokinase (EC 2.7.1.15) (from data) 0.17 BT0188 RNA polymerase ECF-type sigma factor (NCBI ptt file) low > 81
Pantoea sp. MT58 0.32 IAI47_00370 ribokinase 0.32 IAI47_19735 sigma-70 family RNA polymerase sigma factor low > 76
Shewanella oneidensis MR-1 0.31 SO0810 rbsK ribokinase (NCBI ptt file) 0.21 SO1986 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.30 Shew_0696 ribokinase (RefSeq) 0.20 Shew_1476 RNA polymerase sigma factor (RefSeq) low > 60
Dinoroseobacter shibae DFL-12 0.28 Dshi_1976 PfkB domain protein (RefSeq) 0.21 Dshi_0366 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.27 Rru_A2297 Ribokinase (NCBI) 0.23 Rru_A0722 Sigma-24 (FecI) (NCBI) low > 58
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_01001 ribokinase 0.21 CCNA_00685 RNA polymerase sigma factor low > 67
Caulobacter crescentus NA1000 0.27 CCNA_01001 ribokinase 0.21 CCNA_00685 RNA polymerase sigma factor low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.25 A4249_RS15765 ribokinase 0.20 A4249_RS05845 sigma-70 family RNA polymerase sigma factor low > 48
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.4302.1 Ribokinase (EC 2.7.1.15) 0.30 Xcc-8004.3601.1 RNA polymerase sigma-70 factor low > 74
Rhizobium sp. OAE497 0.24 ABIE40_RS01880 ribokinase 0.29 ABIE40_RS01975 sigma-70 family RNA polymerase sigma factor low > 107
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_03275 ribokinase 0.24 CA264_02680 RNA polymerase subunit sigma-70 low > 74
Alteromonas macleodii MIT1002 0.22 MIT1002_02988 Ribokinase 0.30 MIT1002_03202 Sigma-K factor low > 70
Bosea sp. OAE506 0.21 ABIE41_RS03745 ribokinase 0.31 ABIE41_RS11620 sigma-70 family RNA polymerase sigma factor low > 77
Sphingomonas koreensis DSMZ 15582 0.19 Ga0059261_0568 Sugar kinases, ribokinase family 0.31 Ga0059261_1715 RNA polymerase sigma factor, sigma-70 family — —
Phaeobacter inhibens DSM 17395 0.18 PGA1_c34980 putative pfkB family carbohydrate kinase 0.21 PGA1_c27510 'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)' low > 62
Rhodopseudomonas palustris CGA009 0.14 TX73_002370 adenosine kinase 0.30 TX73_008400 sigma-70 family RNA polymerase sigma factor low > 86

Not shown: 38 genomes with orthologs for ABZR87_RS09950 only; 11 genomes with orthologs for ABZR87_RS16160 only