Conservation of cofitness between Sama_1940 and Sama_2737 in Shewanella amazonensis SB2B

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_1940 ATP-dependent helicase DinG (RefSeq) 1.0 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.79 2
Shewanella oneidensis MR-1 0.59 SO2081 ATP-dependent helicase, DinG family (NCBI ptt file) 0.76 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.19 54
Shewanella sp. ANA-3 0.59 Shewana3_1859 helicase c2 (RefSeq) 0.76 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) low > 73
Shewanella loihica PV-4 0.58 Shew_2196 helicase c2 (RefSeq) 0.75 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.78 7
Serratia liquefaciens MT49 0.39 IAI46_14550 ATP-dependent DNA helicase 0.59 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ low > 86
Alteromonas macleodii MIT1002 0.39 MIT1002_02593 putative ATP-dependent helicase DinG 0.59 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ low > 70
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_09930 ATP-dependent DNA helicase 0.60 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ low > 62
Dickeya dadantii 3937 0.39 DDA3937_RS11240 ATP-dependent DNA helicase 0.56 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ low > 74
Escherichia coli ECOR27 0.39 NOLOHH_17100 yoaA putative ATP-dependent DNA helicase YoaA 0.57 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ low > 57
Escherichia coli ECOR38 0.39 HEPCGN_04970 yoaA putative ATP-dependent DNA helicase YoaA 0.57 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ low > 85
Escherichia coli ECRC102 0.39 NIAGMN_01485 yoaA putative ATP-dependent DNA helicase YoaA 0.57 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ — —
Enterobacter asburiae PDN3 0.39 EX28DRAFT_0750 Rad3-related DNA helicases 0.57 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_01925 putative ATP-dependent helicase DinG 0.57 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ low > 73
Escherichia coli Nissle 1917 0.39 ECOLIN_RS10055 ATP-dependent DNA helicase 0.58 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC101 0.39 MCAODC_18830 yoaA putative ATP-dependent DNA helicase YoaA 0.57 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC98 0.39 JDDGAC_01155 yoaA putative ATP-dependent DNA helicase YoaA 0.57 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC101 0.39 OKFHMN_26580 yoaA putative ATP-dependent DNA helicase YoaA 0.57 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli BL21 0.39 ECD_01778 putative ATP-dependent helicase, DinG family 0.57 ECD_02724 ssDNA exonuclease, 5 — —
Escherichia coli ECRC99 0.39 KEDOAH_01530 yoaA putative ATP-dependent DNA helicase YoaA 0.57 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC62 0.39 BNILDI_15885 yoaA putative ATP-dependent DNA helicase YoaA 0.57 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ — —
Dickeya dianthicola 67-19 0.39 HGI48_RS11275 ATP-dependent DNA helicase 0.57 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ low > 71
Escherichia fergusonii Becca 0.39 EFB2_02192 putative ATP-dependent DNA helicase YoaA 0.58 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ low > 86
Dickeya dianthicola ME23 0.39 DZA65_RS11620 ATP-dependent DNA helicase 0.57 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ low > 75
Pantoea sp. MT58 0.39 IAI47_08820 ATP-dependent DNA helicase 0.54 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ low > 76
Escherichia coli BW25113 0.38 b1808 yoaA conserved protein with nucleoside triphosphate hydrolase domain (NCBI) 0.57 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) low > 76
Rahnella sp. WP5 0.38 EX31_RS10615 ATP-dependent DNA helicase 0.55 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF2823 DinG family ATP-dependent helicase YoaA 0.57 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 78
Enterobacter sp. TBS_079 0.38 MPMX20_02714 putative ATP-dependent DNA helicase YoaA 0.55 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ low > 85
Klebsiella michiganensis M5al 0.38 BWI76_RS17815 ATP-dependent helicase 0.56 BWI76_RS23805 ssDNA exonuclease RecJ low > 92
Pectobacterium carotovorum WPP14 0.38 HER17_RS11290 ATP-dependent DNA helicase 0.53 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ low > 75
Erwinia tracheiphila SCR3 0.38 LU632_RS13150 ATP-dependent DNA helicase 0.53 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ low > 74
Dechlorosoma suillum PS 0.35 Dsui_2149 DNA helicase, Rad3 0.46 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ — —
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS07580 helicase 0.45 RR42_RS06090 single-stranded DNA exonuclease 0.68 3
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_2492 Rad3-related DNA helicases 0.49 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ 0.52 17
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS13325 ATP-dependent DNA helicase 0.43 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ low > 80
Ralstonia solanacearum PSI07 0.33 RPSI07_RS15960 ATP-dependent DNA helicase 0.44 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS01530 ATP-dependent DNA helicase 0.43 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ low > 76
Ralstonia solanacearum UW163 0.33 UW163_RS14840 ATP-dependent DNA helicase 0.43 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ — —
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS12495 helicase 0.43 BPHYT_RS12730 single-stranded DNA exonuclease low > 109
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_00533 ATP-dependent DNA helicase DinG 0.43 H281DRAFT_00488 exonuclease RecJ low > 103
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS19750 ATP-dependent DNA helicase 0.42 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ low > 74
Paraburkholderia graminis OAS925 0.31 ABIE53_002724 ATP-dependent DNA helicase DinG 0.43 ABIE53_002771 single-stranded-DNA-specific exonuclease 0.34 41
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_02195 dinG helicase 0.42 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ low > 52
Rhodanobacter denitrificans MT42 0.30 LRK55_RS12465 ATP-dependent DNA helicase 0.19 LRK55_RS18310 DHHA1 domain-containing protein low > 63
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS06060 ATP-dependent DNA helicase 0.43 QEN71_RS05835 single-stranded-DNA-specific exonuclease RecJ low > 153
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS12765 ATP-dependent DNA helicase 0.41 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ low > 59
Acidovorax sp. GW101-3H11 0.29 Ac3H11_2460 DinG family ATP-dependent helicase YoaA 0.42 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Castellaniella sp019104865 MT123 0.29 ABCV34_RS01875 ATP-dependent DNA helicase 0.42 ABCV34_RS05005 single-stranded-DNA-specific exonuclease RecJ low > 48
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.1496.1 DinG family ATP-dependent helicase YoaA 0.42 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 74
Variovorax sp. SCN45 0.28 GFF986 DinG family ATP-dependent helicase YoaA 0.43 GFF6700 Single-stranded-DNA-specific exonuclease RecJ low > 127
Variovorax sp. OAS795 0.28 ABID97_RS14180 ATP-dependent DNA helicase 0.42 ABID97_RS22940 single-stranded-DNA-specific exonuclease RecJ low > 91
Ralstonia solanacearum GMI1000 0.18 RS_RS08195 ATP-dependent DNA helicase 0.43 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ low > 80
Herbaspirillum seropedicae SmR1 0.17 HSERO_RS14855 helicase 0.42 HSERO_RS13965 single-stranded DNA exonuclease low > 78

Not shown: 4 genomes with orthologs for Sama_1940 only; 40 genomes with orthologs for Sama_2737 only