Conservation of cofitness between Shew_3474 and Shew_2483 in Shewanella loihica PV-4

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 1.0 Shew_2483 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.59 19
Shewanella oneidensis MR-1 0.83 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.83 SO1819 dinG ATP-dependent helicase DinG (NCBI ptt file) 0.28 48
Shewanella sp. ANA-3 0.82 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.83 Shewana3_2630 dinG ATP-dependent DNA helicase DinG (RefSeq) low > 73
Shewanella amazonensis SB2B 0.77 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.82 Sama_1249 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.46 23
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_01045 DNA helicase RecQ 0.49 CSW01_09290 ATP-dependent DNA helicase DinG low > 62
Pectobacterium carotovorum WPP14 0.59 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.26 HER17_RS13230 ATP-dependent DNA helicase DinG low > 75
Pantoea sp. MT58 0.58 IAI47_18360 ATP-dependent DNA helicase RecQ 0.26 IAI47_13295 ATP-dependent DNA helicase DinG low > 76
Dickeya dianthicola ME23 0.58 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.23 DZA65_RS09155 ATP-dependent DNA helicase DinG low > 75
Dickeya dianthicola 67-19 0.58 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.23 HGI48_RS08850 ATP-dependent DNA helicase DinG low > 71
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.25 EX28DRAFT_2193 Rad3-related DNA helicases low > 76
Enterobacter sp. TBS_079 0.58 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.25 MPMX20_01426 ATP-dependent DNA helicase DinG low > 85
Klebsiella michiganensis M5al 0.58 BWI76_RS01245 DNA helicase RecQ 0.25 BWI76_RS08920 ATP-dependent DNA helicase DinG low > 92
Dickeya dadantii 3937 0.58 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.23 DDA3937_RS08765 ATP-dependent DNA helicase DinG low > 74
Escherichia coli ECRC102 0.57 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.25 NIAGMN_04325 dinG ATP-dependent DNA helicase DinG — —
Escherichia coli ECRC101 0.57 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.25 MCAODC_25495 dinG ATP-dependent DNA helicase DinG low > 87
Escherichia coli ECRC99 0.57 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.25 KEDOAH_21630 dinG ATP-dependent DNA helicase DinG — —
Escherichia coli ECOR27 0.57 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.25 NOLOHH_22630 dinG ATP-dependent DNA helicase DinG low > 75
Escherichia coli ECRC98 0.57 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.25 JDDGAC_09915 dinG ATP-dependent DNA helicase DinG low > 86
Escherichia fergusonii Becca 0.57 EFB2_04815 ATP-dependent DNA helicase RecQ 0.25 EFB2_03306 ATP-dependent DNA helicase DinG 0.49 70
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 0.25 OHPLBJKB_02914 putative ATP-dependent helicase DinG low > 73
Escherichia coli ECRC62 0.57 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 0.25 BNILDI_20910 dinG ATP-dependent DNA helicase DinG low > 75
Escherichia coli ECOR38 0.57 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.25 HEPCGN_01765 dinG ATP-dependent DNA helicase DinG low > 87
Escherichia coli ECRC100 0.57 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.25 OKFHMN_06280 dinG ATP-dependent DNA helicase DinG low > 80
Escherichia coli BW25113 0.57 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.25 b0799 dinG ATP-dependent DNA helicase (NCBI) 0.16 60
Serratia liquefaciens MT49 0.57 IAI46_00770 ATP-dependent DNA helicase RecQ 0.25 IAI46_07445 ATP-dependent DNA helicase DinG low > 86
Escherichia coli Nissle 1917 0.57 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.25 ECOLIN_RS04255 ATP-dependent DNA helicase DinG — —
Escherichia coli BL21 0.57 ECD_03701 ATP-dependent DNA helicase 0.25 ECD_00766 ATP-dependent DNA helicase 0.58 24
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF248 ATP-dependent DNA helicase RecQ 0.24 GFF697 ATP-dependent helicase DinG/Rad3 low > 78
Erwinia amylovora T8 0.56 OLJFJH_06445 ATP-dependent DNA helicase RecQ 0.25 OLJFJH_16560 ATP-dependent DNA helicase DinG low > 58
Erwinia tracheiphila SCR3 0.56 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.24 LU632_RS09400 dinG ATP-dependent DNA helicase DinG low > 74
Rahnella sp. WP5 0.56 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.24 EX31_RS19020 ATP-dependent DNA helicase DinG low > 89
Rhodanobacter denitrificans MT42 0.45 LRK55_RS12700 DNA helicase RecQ 0.28 LRK55_RS10710 ATP-dependent DNA helicase DinG low > 63
Marinobacter adhaerens HP15 0.45 HP15_1718 ATP-dependent DNA helicase RecQ 0.33 HP15_1856 helicase c2 low > 73
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS13000 DNA helicase RecQ 0.28 LRK54_RS11005 ATP-dependent DNA helicase DinG low > 59
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_02375 recQ DNA helicase RecQ 0.28 OKGIIK_12870 dinG ATP-dependent DNA helicase DinG low > 52
Pseudomonas fluorescens SBW25 0.44 PFLU_RS21920 DNA helicase RecQ 0.33 PFLU_RS06540 ATP-dependent DNA helicase DinG low > 109
Pseudomonas aeruginosa PA14 0.44 IKLFDK_17145 DNA helicase RecQ 0.33 IKLFDK_04780 ATP-dependent DNA helicase DinG low > 101
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS21920 DNA helicase RecQ 0.33 PFLU_RS06540 ATP-dependent DNA helicase DinG low > 109
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.28 ABZR86_RS16845 ATP-dependent DNA helicase DinG low > 74
Pseudomonas putida KT2440 0.44 PP_4516 ATP-dependent DNA 3 0.32 PP_1125 putative Helicase low > 96
Pseudomonas simiae WCS417 0.44 PS417_19950 ATP-dependent DNA helicase RecQ 0.33 PS417_06510 ATP-dependent DNA helicase DinG 0.19 31
Rhodanobacter sp000427505 FW510-R12 0.44 LRK53_RS15600 DNA helicase RecQ 0.28 LRK53_RS03855 ATP-dependent DNA helicase DinG low > 60
Pseudomonas sp. BP01 0.44 JOY50_RS01155 recQ DNA helicase RecQ 0.32 JOY50_RS24145 dinG ATP-dependent DNA helicase DinG low > 84
Pseudomonas sp. DMC3 0.44 GFF2380 ATP-dependent DNA helicase RecQ 0.33 GFF2161 ATP-dependent DNA helicase DinG low > 89
Pseudomonas sp. RS175 0.44 PFR28_00788 ATP-dependent DNA helicase RecQ 0.33 PFR28_00520 ATP-dependent DNA helicase DinG low > 88
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.33 PfGW456L13_4624 ATP-dependent helicase DinG/Rad3 0.29 35
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.33 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 0.33 14
Pseudomonas sp. SVBP6 0.44 COO64_RS21845 recQ DNA helicase RecQ 0.32 COO64_RS17020 dinG ATP-dependent DNA helicase DinG low > 93
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_04050 ATP-dependent DNA helicase RecQ 0.33 AO356_05425 ATP-dependent DNA helicase DinG low > 104
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.32 Pf1N1B4_3194 ATP-dependent helicase DinG/Rad3 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.34 Psyr_3856 Helicase c2 0.31 79
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.34 Psyr_3856 Helicase c2 low > 86
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_18430 ATP-dependent DNA helicase RecQ 0.33 AO353_17020 ATP-dependent DNA helicase DinG 0.33 34
Pseudomonas sp. S08-1 0.43 OH686_20670 ATP-dependent DNA helicase RecQ 0.34 OH686_04830 ATP-dependent helicase DinG/Rad3 low > 80
Pseudomonas stutzeri RCH2 0.43 Psest_1869 ATP-dependent DNA helicase RecQ 0.33 Psest_2857 Rad3-related DNA helicases low > 67
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.26 Xcc-8004.5017.1 ATP-dependent helicase DinG/Rad3 low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1958 ATP-dependent DNA helicase RecQ 0.25 GFF2695 ATP-dependent helicase DinG/Rad3 low > 90
Acidovorax sp. GW101-3H11 0.40 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.25 Ac3H11_4422 ATP-dependent helicase DinG/Rad3 — —
Fusobacterium nucleatum SB010 0.34 HUW76_07235 DNA helicase RecQ 0.18 HUW76_04565 ATP-dependent DNA helicase low > 35

Not shown: 46 genomes with orthologs for Shew_3474 only; 0 genomes with orthologs for Shew_2483 only