Conservation of cofitness between b3822 and b3162 in Escherichia coli BW25113

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3822 recQ ATP-dependent DNA helicase (NCBI) 1.0 b3162 deaD inducible ATP-independent RNA helicase (VIMSS) 0.21 15
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 1.00 ECOLIN_RS18165 ATP-dependent RNA helicase DeaD low > 52
Escherichia fergusonii Becca 1.00 EFB2_04815 ATP-dependent DNA helicase RecQ 1.00 EFB2_00661 ATP-dependent RNA helicase DeaD low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 1.00 OHPLBJKB_00538 ATP-dependent RNA helicase DeaD 0.72 3
Escherichia coli ECRC101 1.00 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 1.00 OKFHMN_18155 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli ECRC62 1.00 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 1.00 BNILDI_01580 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli ECRC99 1.00 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 1.00 KEDOAH_09995 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli ECOR38 1.00 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 1.00 HEPCGN_17030 deaD ATP-dependent RNA helicase DeaD 0.77 6
Escherichia coli ECOR27 1.00 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 1.00 NOLOHH_09955 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli ECRC102 1.00 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 1.00 NIAGMN_15915 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli ECRC101 1.00 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 1.00 MCAODC_08675 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli ECRC98 1.00 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 1.00 JDDGAC_21780 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli BL21 1.00 ECD_03701 ATP-dependent DNA helicase 1.00 ECD_03029 ATP-dependent RNA helicase low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF248 ATP-dependent DNA helicase RecQ 0.89 GFF1504 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) low > 78
Enterobacter sp. TBS_079 0.93 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.85 MPMX20_04066 ATP-dependent RNA helicase DeaD low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.84 EX28DRAFT_3211 Superfamily II DNA and RNA helicases — —
Klebsiella michiganensis M5al 0.92 BWI76_RS01245 DNA helicase RecQ 0.86 BWI76_RS25055 DEAD/DEAH family ATP-dependent RNA helicase — —
Pectobacterium carotovorum WPP14 0.82 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.78 HER17_RS18175 DEAD/DEAH family ATP-dependent RNA helicase low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.78 LU632_RS21030 DEAD/DEAH family ATP-dependent RNA helicase — —
Pantoea sp. MT58 0.82 IAI47_18360 ATP-dependent DNA helicase RecQ 0.78 IAI47_16990 DEAD/DEAH family ATP-dependent RNA helicase low > 76
Rahnella sp. WP5 0.81 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.80 EX31_RS08510 DEAD/DEAH family ATP-dependent RNA helicase low > 89
Serratia liquefaciens MT49 0.81 IAI46_00770 ATP-dependent DNA helicase RecQ 0.80 IAI46_01970 DEAD/DEAH family ATP-dependent RNA helicase low > 86
Dickeya dianthicola ME23 0.80 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.78 DZA65_RS03270 DEAD/DEAH family ATP-dependent RNA helicase — —
Dickeya dianthicola 67-19 0.80 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.78 HGI48_RS03275 DEAD/DEAH family ATP-dependent RNA helicase low > 71
Dickeya dadantii 3937 0.80 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.79 DDA3937_RS03100 DEAD/DEAH family ATP-dependent RNA helicase low > 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_01045 DNA helicase RecQ 0.37 CSW01_18185 DEAD/DEAH box family ATP-dependent RNA helicase low > 62
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.42 SO4034 deaD ATP-dependent RNA helicase DeaD (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.58 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.43 Shewana3_3595 DEAD/DEAH box helicase domain-containing protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.58 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.45 Sama_0512 ATP-dependent RNA helicase DeaD (RefSeq) low > 62
Shewanella loihica PV-4 0.57 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.46 Shew_0531 DEAD/DEAH box helicase domain-containing protein (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.53 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.45 MIT1002_00666 Cold-shock DEAD box protein A low > 70
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.36 PfGW456L13_2247 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_07560 DNA helicase RecQ 0.31 CA264_05910 RNA helicase low > 74
Pseudomonas putida KT2440 0.45 PP_4516 ATP-dependent DNA 3 0.36 PP_1868 ATP-dependent DEAD-box RNA helicase DeaD — —
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.36 PFR28_00980 ATP-dependent RNA helicase DeaD low > 88
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.36 AO356_03110 RNA helicase — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.36 Pf6N2E2_2450 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.36 Pf1N1B4_265 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS21920 DNA helicase RecQ 0.36 PFLU_RS08490 DEAD/DEAH box helicase — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS21920 DNA helicase RecQ 0.36 PFLU_RS08490 DEAD/DEAH box helicase low > 109
Pseudomonas simiae WCS417 0.45 PS417_19950 ATP-dependent DNA helicase RecQ 0.36 PS417_08540 RNA helicase low > 88
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS14585 DNA helicase RecQ 0.28 HMPREF1058_RS11910 DEAD/DEAH box helicase low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS20865 DNA helicase RecQ 0.28 ABZR88_RS01495 DEAD/DEAH box helicase — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS13000 DNA helicase RecQ 0.43 LRK54_RS02650 DEAD/DEAH box helicase low > 59
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.36 AO353_19130 RNA helicase — —
Dechlorosoma suillum PS 0.44 Dsui_3092 ATP-dependent DNA helicase RecQ 0.46 Dsui_1351 DNA/RNA helicase, superfamily II low > 51
Phocaeicola dorei CL03T12C01 0.44 ABI39_RS10235 DNA helicase RecQ 0.28 ABI39_RS04950 DEAD/DEAH box helicase low > 72
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.36 Psest_1804 Superfamily II DNA and RNA helicases low > 67
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.43 ABZR86_RS08990 DEAD/DEAH box helicase low > 74
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12700 DNA helicase RecQ 0.43 LRK55_RS02405 DEAD/DEAH box helicase low > 63
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.36 Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal — —
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.36 Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal — —
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.43 OKGIIK_09705 ATP-dependent RNA helicase low > 52
Pseudomonas sp. S08-1 0.43 OH686_20670 ATP-dependent DNA helicase RecQ 0.37 OH686_22545 DEAD-box ATP-dependent RNA helicase DeaD ( CshA) low > 80
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_0784 ATP-dependent DNA helicase RecQ 0.30 Echvi_3056 Superfamily II DNA and RNA helicases — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.43 Xcc-8004.1841.1 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) low > 74
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS14110 DNA helicase RecQ 0.27 HMPREF1181_RS02175 DEAD/DEAH box helicase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.41 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.27 BT3303 ATP-dependent RNA helicase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.41 BACOVA_04594 ATP-dependent DNA helicase RecQ 0.28 BACOVA_00904 DEAD/DEAH box helicase low > 94
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS01195 DNA helicase RecQ 0.26 HMPREF1078_RS06015 DEAD/DEAH box helicase low > 61
Fusobacterium nucleatum SB010 0.34 HUW76_07235 DNA helicase RecQ 0.27 HUW76_10100 DEAD/DEAH box helicase low > 35

Not shown: 35 genomes with orthologs for b3822 only; 6 genomes with orthologs for b3162 only