Conservation of cofitness between b2052 and b2904 in Escherichia coli BW25113

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2052 fcl bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) 1.0 b2904 gcvH glycine cleavage system protein H (NCBI) 0.22 9
Escherichia coli ECRC62 1.00 BNILDI_14590 fcl GDP-L-fucose synthase 1.00 BNILDI_09975 gcvH glycine cleavage system protein GcvH — —
Escherichia coli BL21 1.00 ECD_01958 bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase 1.00 ECD_02736 glycine cleavage complex lipoylprotein low > 60
Escherichia fergusonii Becca 1.00 EFB2_01802 GDP-L-fucose synthase 1.00 EFB2_00998 Glycine cleavage system H protein low > 86
Escherichia coli ECRC102 1.00 NIAGMN_22295 fcl GDP-L-fucose synthase 1.00 NIAGMN_17290 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECRC98 1.00 JDDGAC_28460 fcl GDP-L-fucose synthase 1.00 JDDGAC_23165 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECOR27 1.00 NOLOHH_15680 fcl GDP-L-fucose synthase 1.00 NOLOHH_11440 gcvH glycine cleavage system protein GcvH low > 57
Escherichia coli ECRC101 1.00 MCAODC_20590 fcl GDP-L-fucose synthase 1.00 MCAODC_10045 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECRC99 1.00 KEDOAH_03800 fcl GDP-L-fucose synthase 1.00 KEDOAH_08615 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECRC101 1.00 OKFHMN_24350 fcl GDP-L-fucose synthase 1.00 OKFHMN_19525 gcvH glycine cleavage system protein GcvH — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS12090 GDP-L-fucose synthase 1.00 ECOLIN_RS16170 glycine cleavage system protein GcvH — —
Escherichia coli ECOR38 0.99 HEPCGN_03050 fcl GDP-L-fucose synthase 0.99 HEPCGN_18815 gcvH glycine cleavage system protein GcvH low > 85
Enterobacter asburiae PDN3 0.93 EX28DRAFT_0503 Nucleoside-diphosphate-sugar epimerases 0.96 EX28DRAFT_2956 glycine cleavage system H protein low > 76
Enterobacter sp. TBS_079 0.93 MPMX20_03034 GDP-L-fucose synthase 0.95 MPMX20_03763 Glycine cleavage system H protein low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF3876 GDP-L-fucose synthetase (EC 1.1.1.271) 1.00 GFF3004 Glycine cleavage system H protein low > 78
Pectobacterium carotovorum WPP14 0.77 HER17_RS14535 GDP-L-fucose synthase 0.78 HER17_RS18000 glycine cleavage system protein GcvH low > 75
Pseudomonas stutzeri RCH2 0.70 Psest_1819 Nucleoside-diphosphate-sugar epimerases 0.62 Psest_0182 glycine cleavage system H protein low > 67
Dechlorosoma suillum PS 0.67 Dsui_0086 nucleoside-diphosphate-sugar epimerase 0.63 Dsui_2736 glycine cleavage system H protein low > 51
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS17885 GDP-L-fucose synthase 0.62 PFLU_RS28910 glycine cleavage system protein GcvH 0.13 84
Pseudomonas fluorescens SBW25 0.67 PFLU_RS17885 GDP-L-fucose synthase 0.62 PFLU_RS28910 glycine cleavage system protein GcvH low > 109
Castellaniella sp019104865 MT123 0.66 ABCV34_RS12930 GDP-L-fucose synthase 0.52 ABCV34_RS08840 glycine cleavage system protein GcvH — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF1841 GDP-L-fucose synthetase (EC 1.1.1.271) 0.52 GFF5214 Glycine cleavage system H protein low > 90
Phaeobacter inhibens DSM 17395 0.61 PGA1_65p00300 GDP-L-fucose synthetase Fcl 0.50 PGA1_c05560 glycine cleavage system protein GcvH — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.58 ABZR88_RS17480 GDP-L-fucose synthase 0.47 ABZR88_RS00300 glycine cleavage system protein GcvH — —
Desulfovibrio vulgaris Hildenborough JW710 0.58 DVU0090 wcaG GDP-fucose synthetase (TIGR) 0.53 DVU1426 gcvH glycine cleavage system H protein (TIGR) — —
Pedobacter sp. GW460-11-11-14-LB5 0.57 CA265_RS19675 GDP-fucose synthetase 0.47 CA265_RS18980 glycine cleavage system protein H — —
Variovorax sp. OAS795 0.57 ABID97_RS19130 GDP-L-fucose synthase 0.53 ABID97_RS19650 glycine cleavage system protein GcvH — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.57 CA264_05195 GDP-fucose synthetase 0.46 CA264_14555 glycine cleavage system protein H — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS21005 GDP-L-fucose synthase 0.58 RR42_RS20065 glycine cleavage system protein H low > 128
Paraburkholderia graminis OAS925 0.56 ABIE53_000941 GDP-L-fucose synthase 0.61 ABIE53_000237 glycine cleavage system H protein low > 113
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS26355 GDP-L-fucose synthase 0.57 QEN71_RS29210 glycine cleavage system protein GcvH low > 153
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS04005 GDP-L-fucose synthase 0.59 BPHYT_RS19325 glycine cleavage system H protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_04777 GDP-L-fucose synthase 0.59 H281DRAFT_02410 glycine cleavage system H protein low > 103
Variovorax sp. SCN45 0.55 GFF60 GDP-L-fucose synthetase (EC 1.1.1.271) 0.54 GFF6477 Glycine cleavage system H protein — —
Synechococcus elongatus PCC 7942 0.55 Synpcc7942_1700 wcaG GDP-fucose synthetase NAD dependent epimerase/dehydratase 0.44 Synpcc7942_2046 gcsH glycine cleavage system protein H — —
Desulfovibrio vulgaris Miyazaki F 0.53 DvMF_2695 NAD-dependent epimerase/dehydratase (RefSeq) 0.49 DvMF_0225 glycine cleavage system protein H (RefSeq) low > 51
Azospirillum brasilense Sp245 0.53 AZOBR_RS03370 GDP-L-fucose synthase 0.51 AZOBR_RS10465 glycine cleavage system protein H — —
Parabacteroides merdae CL09T00C40 0.53 HMPREF1078_RS03850 GDP-L-fucose synthase 0.47 HMPREF1078_RS05930 glycine cleavage system protein GcvH low > 61
Magnetospirillum magneticum AMB-1 0.53 AMB_RS00820 GDP-L-fucose synthase 0.44 AMB_RS03930 glycine cleavage system protein H low > 64
Azospirillum sp. SherDot2 0.52 MPMX19_05629 GDP-L-fucose synthase 0.48 MPMX19_01030 Glycine cleavage system H protein low > 112
Rhodospirillum rubrum S1H 0.51 Rru_A0254 NAD-dependent epimerase/dehydratase (NCBI) 0.50 Rru_A3050 Glycine cleavage H-protein (NCBI) low > 58
Bacteroides ovatus ATCC 8483 0.50 BACOVA_00512 NAD dependent epimerase/dehydratase family protein 0.53 BACOVA_01614 glycine cleavage system H protein — —
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS20405 GDP-L-fucose synthase 0.51 ABI39_RS04240 glycine cleavage system protein GcvH low > 72
Dinoroseobacter shibae DFL-12 0.50 Dshi_4142 NAD-dependent epimerase/dehydratase (RefSeq) 0.46 Dshi_2681 glycine cleavage system H protein (RefSeq) — —
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS06610 GDP-L-fucose synthase 0.51 HMPREF1058_RS12495 glycine cleavage system protein GcvH low > 67
Caulobacter crescentus NA1000 0.50 CCNA_00471 GDP-L-fucose synthase 0.49 CCNA_03464 glycine cleavage system H protein low > 66
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00471 GDP-L-fucose synthase 0.49 CCNA_03464 glycine cleavage system H protein low > 67
Mycobacterium tuberculosis H37Rv 0.50 Rv1512 Probable nucleotide-sugar epimerase EpiA 0.51 Rv1826 Probable glycine cleavage system H protein GcvH — —
Rhodanobacter denitrificans MT42 0.50 LRK55_RS03655 GDP-L-fucose synthase 0.56 LRK55_RS05275 glycine cleavage system protein GcvH low > 63
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS12535 GDP-L-fucose synthase 0.51 HMPREF1181_RS00935 glycine cleavage system protein GcvH low > 56
Bacteroides thetaiotaomicron VPI-5482 0.49 BT1225 GDP-fucose synthetase (NCBI ptt file) 0.53 BT2519 putative glycine cleavage system H protein (NCBI ptt file) — —
Agrobacterium fabrum C58 0.48 Atu4790 GDP-fucose synthetase 0.54 Atu1463 glycine cleavage system component H low > 89
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS22065 EpiA 0.46 HSERO_RS07915 glycine cleavage system protein H 0.35 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.36 Echvi_4397 Nucleoside-diphosphate-sugar epimerases 0.42 Echvi_4084 glycine cleavage system H protein low > 79
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS13020 NAD-dependent epimerase/dehydratase family protein 0.55 A4249_RS09330 glycine cleavage system protein GcvH low > 48
Dickeya dadantii 3937 0.23 DDA3937_RS18680 GDP-L-fucose synthase 0.73 DDA3937_RS03250 glycine cleavage system protein GcvH low > 74
Dickeya dianthicola ME23 0.23 DZA65_RS19745 GDP-L-fucose synthase 0.79 DZA65_RS03440 glycine cleavage system protein GcvH low > 75
Dickeya dianthicola 67-19 0.23 HGI48_RS18610 GDP-L-fucose synthase 0.79 HGI48_RS03395 glycine cleavage system protein GcvH low > 71

Not shown: 0 genomes with orthologs for b2052 only; 43 genomes with orthologs for b2904 only