| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b1827 | kdgR | predicted DNA-binding transcriptional regulator (NCBI) | 1.0 | b2103 | thiD | phosphomethylpyrimidine kinase (NCBI) | 0.26 | 10 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_01625 | kdgR | DNA-binding transcriptional regulator KdgR | 1.00 | KEDOAH_04075 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_01055 | kdgR | DNA-binding transcriptional regulator KdgR | 1.00 | JDDGAC_28185 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_01904 | | Transcriptional regulator KdgR | 1.00 | OHPLBJKB_01607 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 73 |
| Escherichia coli BL21 | 1.00 | ECD_01798 | | KDG regulon transcriptional repressor | 1.00 | ECD_02031 | | hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase | low | > 60 |
| Escherichia coli ECRC101 | 1.00 | OKFHMN_26480 | kdgR | DNA-binding transcriptional regulator KdgR | 1.00 | OKFHMN_24075 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_01580 | kdgR | DNA-binding transcriptional regulator KdgR | 1.00 | NIAGMN_22020 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_18925 | kdgR | DNA-binding transcriptional regulator KdgR | 1.00 | MCAODC_21085 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia fergusonii Becca | 0.99 | EFB2_02174 | | Transcriptional regulator KdgR | 1.00 | EFB2_01754 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 86 |
| Escherichia coli ECOR38 | 0.99 | HEPCGN_04880 | kdgR | DNA-binding transcriptional regulator KdgR | 0.99 | HEPCGN_02760 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 85 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS10175 | | DNA-binding transcriptional regulator KdgR | 0.99 | ECOLIN_RS12335 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli ECRC62 | 0.99 | BNILDI_15785 | kdgR | DNA-binding transcriptional regulator KdgR | 1.00 | BNILDI_14330 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.96 | GFF2842 | | Transcriptional regulator KdgR, KDG operon repressor | 0.91 | GFF3834 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.95 | EX28DRAFT_0729 | | transcriptional regulator, IclR family | 0.90 | EX28DRAFT_0469 | | hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 76 |
| Klebsiella michiganensis M5al | 0.95 | BWI76_RS17960 | | DNA-binding transcriptional regulator KdgR | 0.92 | BWI76_RS19375 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Enterobacter sp. TBS_079 | 0.95 | MPMX20_02734 | | Transcriptional regulator KdgR | 0.90 | MPMX20_03076 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 85 |
| Dickeya dadantii 3937 | 0.91 | DDA3937_RS11445 | | DNA-binding transcriptional regulator KdgR | 0.76 | DDA3937_RS15335 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 74 |
| Dickeya dianthicola ME23 | 0.90 | DZA65_RS11830 | | DNA-binding transcriptional regulator KdgR | 0.74 | DZA65_RS16235 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.90 | HGI48_RS11490 | | DNA-binding transcriptional regulator KdgR | 0.75 | HGI48_RS15410 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.89 | HER17_RS11535 | | DNA-binding transcriptional regulator KdgR | 0.78 | HER17_RS06265 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 75 |
| Pantoea sp. MT58 | 0.86 | IAI47_08720 | | DNA-binding transcriptional regulator KdgR | 0.76 | IAI47_06810 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 76 |
| Rahnella sp. WP5 | 0.85 | EX31_RS24895 | | DNA-binding transcriptional regulator KdgR | 0.79 | EX31_RS20390 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 89 |
| Serratia liquefaciens MT49 | 0.82 | IAI46_10820 | | DNA-binding transcriptional regulator KdgR | 0.78 | IAI46_19100 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.80 | LU632_RS13230 | kdgR | DNA-binding transcriptional regulator KdgR | 0.76 | LU632_RS08590 | thiD | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 74 |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS10950 | | transcriptional regulator | 0.53 | BPHYT_RS12250 | | phosphomethylpyrimidine kinase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.62 | ABZR87_RS20805 | | DNA-binding transcriptional regulator KdgR | 0.36 | ABZR87_RS04830 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_01160 | | transcriptional regulator, IclR family | 0.54 | H281DRAFT_00587 | | hydroxymethylpyrimidine kinase /phosphomethylpyrimidine kinase | — | — |
| Paraburkholderia graminis OAS925 | 0.62 | ABIE53_002286 | | IclR family KDG regulon transcriptional repressor | 0.51 | ABIE53_002529 | | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.61 | QEN71_RS37295 | | DNA-binding transcriptional regulator KdgR | 0.54 | QEN71_RS06305 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.52 | AO356_28560 | | transcriptional regulator | 0.22 | AO356_15435 | | hydrogenase | low | > 104 |
| Cupriavidus basilensis FW507-4G11 | 0.27 | RR42_RS34920 | | IclR family transcriptional regulator | 0.32 | RR42_RS01370 | | phosphomethylpyrimidine kinase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.26 | TX73_024130 | | IclR family transcriptional regulator | 0.49 | TX73_020570 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Agrobacterium fabrum C58 | 0.26 | Atu0706 | | transcriptional regulator, IclR family | 0.45 | Atu3290 | | phosphomethylpyrimidine kinase | low | > 89 |
| Pseudomonas fluorescens SBW25 | 0.26 | PFLU_RS06715 | | IclR family transcriptional regulator | 0.24 | PFLU_RS26530 | | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.26 | PFLU_RS06715 | | IclR family transcriptional regulator | 0.24 | PFLU_RS26530 | | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.26 | Pf1N1B4_3230 | | Pca regulon regulatory protein PcaR | 0.18 | Pf1N1B4_2718 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.26 | Pf6N2E2_2839 | | Pca regulon regulatory protein PcaR | 0.18 | Pf6N2E2_5024 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.25 | PfGW456L13_4594 | | Pca regulon regulatory protein PcaR | 0.22 | PfGW456L13_1385 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.25 | PS417_06690 | | IclR family transcriptional regulator | 0.24 | PS417_24600 | | hydrogenase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.25 | AO353_17185 | | IclR family transcriptional regulator | 0.23 | AO353_06350 | | hydrogenase | low | > 101 |
| Pseudomonas sp. RS175 | 0.25 | PFR28_00618 | | Pca regulon regulatory protein | 0.20 | PFR28_03843 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.24 | Psyr_4014 | | regulatory protein, IclR | 0.22 | Psyr_4340 | | phosphomethylpyrimidine kinase, putative | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.24 | Psyr_4014 | | regulatory protein, IclR | 0.22 | Psyr_4340 | | phosphomethylpyrimidine kinase, putative | low | > 86 |
| Pseudomonas putida KT2440 | 0.24 | PP_1375 | | transcription regulatory protein (pca regulon) | 0.22 | PP_4782 | | Phosphomethylpyrimidine kinase | low | > 96 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.22 | GFF2386 | | Pca regulon regulatory protein PcaR | 0.39 | GFF249 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.22 | HSERO_RS02910 | | IclR family transcriptional regulator | 0.19 | HSERO_RS02135 | | phosphomethylpyrimidine kinase | low | > 78 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.22 | Xcc-8004.484.1 | | Pca regulon regulatory protein PcaR | 0.30 | Xcc-8004.3091.1 | | hypothetical protein | low | > 74 |
| Parabacteroides merdae CL09T00C40 | 0.22 | HMPREF1078_RS01425 | | IclR family transcriptional regulator | 0.42 | HMPREF1078_RS03470 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 61 |
| Variovorax sp. OAS795 | 0.21 | ABID97_RS24205 | | IclR family transcriptional regulator C-terminal domain-containing protein | 0.34 | ABID97_RS15330 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Acidovorax sp. GW101-3H11 | 0.21 | Ac3H11_3923 | | Transcriptional regulator, IclR family | 0.33 | Ac3H11_1063 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.20 | PGA1_c07430 | | putative transcriptional regulator, IclR family | 0.16 | PGA1_c09030 | | phosphomethylpyrimidine kinase ThiD | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.19 | Psest_3073 | | beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | 0.21 | Psest_0537 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 67 |
| Acinetobacter radioresistens SK82 | 0.19 | MPMX26_01897 | | hypothetical protein | 0.22 | MPMX26_02438 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.14 | ABZR86_RS01165 | | IclR family transcriptional regulator | 0.29 | ABZR86_RS00760 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.10 | Ga0059261_1684 | | transcriptional regulator, IclR family | 0.24 | Ga0059261_1961 | | hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
Not shown: 1 genomes with orthologs for b1827 only; 35 genomes with orthologs for b2103 only