| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0451 | | regulatory protein, LysR:LysR, substrate-binding protein | insig. | 100 | 100 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0451 | | regulatory protein, LysR:LysR, substrate-binding protein | insig. | 100 | 100 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_25300 | | LysR family transcriptional regulator | insig. | 87 | 98 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_13555 | | LysR family transcriptional regulator | insig. | 86 | 98 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4628 | | Malonate utilization transcriptional regulator | insig. | 86 | 98 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2370 | | Malonate utilization transcriptional regulator | insig. | 86 | 98 |
| o | Pseudomonas sp. RS175 | PFR28_04214 | | HTH-type transcriptional regulator GltC | strong | 86 | 98 |
| o | Pseudomonas sp. DMC3 | GFF182 | | HTH-type transcriptional regulator GltC | insig. | 85 | 98 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_05446 | | HTH-type transcriptional regulator GltC | cofit | 86 | 98 |
| o | Pseudomonas simiae WCS417 | PS417_26575 | | LysR family transcriptional regulator | insig. | 86 | 98 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS28230 | | LysR family transcriptional regulator | insig. | 86 | 98 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS28230 | | LysR family transcriptional regulator | insig. | 86 | 98 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1037 | | Malonate utilization transcriptional regulator | insig. | 85 | 98 |
| o | Pseudomonas orientalis W4I3 | QF045_RS00965 | | LysR substrate-binding domain-containing protein | cofit | 84 | 98 |
| o | Pseudomonas segetis P6 | ACVTMO_RS18080 | | LysR family transcriptional regulator | insig. | 83 | 97 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS27350 | | LysR substrate-binding domain-containing protein | insig. | 84 | 98 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_24495 | | LysR family transcriptional regulator | insig. | 84 | 98 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS31900 | | LysR substrate-binding domain-containing protein | insig. | 84 | 98 |
| o | Pseudomonas stutzeri RCH2 | Psest_0112 | | Transcriptional regulator | insig. | 83 | 97 |
| o | Pseudomonas sp. BP01 | JOY50_RS21435 | | LysR substrate-binding domain-containing protein | insig. | 81 | 97 |
| o | Acinetobacter baumannii LAC-4 | RR41_RS11420 | | LysR family transcriptional regulator | insig. | 67 | 98 |
| o | Acinetobacter radioresistens SK82 | MPMX26_01905 | | HTH-type transcriptional regulator CynR | insig. | 62 | 99 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS02995 | | LysR family transcriptional regulator | insig. | 52 | 96 |
| o | Variovorax sp. OAS795 | ABID97_RS27475 | | LysR family transcriptional regulator | insig. | 52 | 97 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00673 | | LysR family transcriptional regulator, malonate utilization transcriptional regulator | insig. | 50 | 97 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS31350 | | LysR family transcriptional regulator | sig. | 51 | 97 |
| o | Rahnella sp. WP5 | EX31_RS04860 | | LysR family transcriptional regulator | insig. | 52 | 96 |
| o | Paraburkholderia graminis OAS925 | ABIE53_001860 | | LysR family malonate utilization transcriptional regulator | insig. | 50 | 97 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS23430 | | LysR substrate-binding domain-containing protein | sig. | 49 | 98 |
| o | Klebsiella michiganensis M5al | BWI76_RS25045 | | Malonate utilization transacting regulator MdcR | insig. | 46 | 98 |
| o | Enterobacter sp. TBS_079 | MPMX20_04247 | | HTH-type transcriptional regulator GltC | insig. | 49 | 96 |
| o | Dickeya dadantii 3937 | DDA3937_RS08135 | | LysR family transcriptional regulator | insig. | 48 | 98 |
| o | Dickeya dianthicola ME23 | DZA65_RS08455 | | LysR family transcriptional regulator | insig. | 48 | 98 |
| o | Dickeya dianthicola 67-19 | HGI48_RS07865 | | LysR family transcriptional regulator | insig. | 48 | 98 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS03825 | | LysR family transcriptional regulator | insig. | 48 | 96 |
| | Klebsiella michiganensis M5al | BWI76_RS16060 | | LysR family transcriptional regulator | insig. | 46 | 98 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_21135 | | Malonate utilization transcriptional regulator | insig. | 46 | 97 |
| o | Pantoea sp. MT58 | IAI47_01705 | | LysR family transcriptional regulator | insig. | 46 | 99 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS18220 | | LysR family transcriptional regulator | cofit | 46 | 99 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS28030 | | hypothetical protein | insig. | 30 | 84 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS36440 | | LysR family transcriptional regulator | insig. | 32 | 91 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3802 | | transcriptional regulator, LysR family (RefSeq) | insig. | 30 | 79 |
| | Rahnella sp. WP5 | EX31_RS04240 | | LysR family transcriptional regulator | insig. | 28 | 84 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_3363 | | LysR-family transcriptional regulator PA4203 | insig. | 28 | 85 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS05415 | | LysR substrate-binding domain-containing protein | insig. | 25 | 87 |
| | Variovorax sp. SCN45 | GFF3454 | | Cys regulon transcriptional activator CysB | insig. | 26 | 95 |
| | Pseudomonas sp. BP01 | JOY50_RS05550 | | LysR family transcriptional regulator | no data | 28 | 85 |
| | Dickeya dianthicola 67-19 | HGI48_RS20680 | | LysR family transcriptional regulator | insig. | 26 | 84 |
| | Pseudomonas sp. S08-1 | OH686_10530 | | Transcriptional regulator, LysR family | insig. | 25 | 92 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04771 | | HTH-type transcriptional regulator CatM | insig. | 26 | 84 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF191 | | Transcriptional regulator ligR, LysR family | insig. | 28 | 78 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2139 | | transcriptional regulator, LysR family | insig. | 27 | 92 |
| | Variovorax sp. OAS795 | ABID97_RS27255 | | LysR substrate-binding domain-containing protein | insig. | 29 | 83 |
| | Agrobacterium fabrum C58 | Atu4705 | | LysR family transcriptional regulator | strong | 26 | 94 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS21120 | | LysR family transcriptional regulator | insig. | 25 | 93 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS21120 | | LysR family transcriptional regulator | strong | 25 | 93 |
| | Pseudomonas segetis P6 | ACVTMO_RS13895 | | LysR family transcriptional regulator | insig. | 27 | 96 |
| | Rahnella sp. WP5 | EX31_RS12125 | | LysR family transcriptional regulator | insig. | 23 | 95 |
| | Variovorax sp. SCN45 | GFF2971 | | Transcriptional regulator, LysR family | insig. | 28 | 79 |
| | Dechlorosoma suillum PS | Dsui_3396 | | transcriptional regulator | insig. | 28 | 94 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS32390 | | LysR family transcriptional regulator | insig. | 26 | 89 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS34110 | | LysR substrate-binding domain-containing protein | insig. | 27 | 78 |
| | Lysobacter sp. OAE881 | ABIE51_RS05475 | | LysR substrate-binding domain-containing protein | insig. | 28 | 97 |
| | Escherichia coli BL21 | ECD_00292 | | transcriptional activator of cyn operon; autorepressor | insig. | 25 | 81 |
| | Escherichia coli BW25113 | b0338 | cynR | DNA-binding transcriptional dual regulator (NCBI) | insig. | 25 | 81 |
| | Agrobacterium fabrum C58 | Atu4641 | | LysR family transcriptional regulator | sig. | 26 | 90 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS00120 | | LysR family transcriptional regulator | insig. | 25 | 83 |
| | Pseudomonas sp. SVBP6 | COO64_RS22680 | | LysR family transcriptional regulator | insig. | 25 | 89 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS01430 | | LysR family transcriptional regulator | cofit | 24 | 84 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS22650 | | LysR substrate-binding domain-containing protein | cofit | 23 | 89 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_22790 | | LysR family transcriptional regulator | insig. | 23 | 89 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS36685 | | LysR substrate-binding domain-containing protein | sig. | 23 | 89 |
| | Variovorax sp. OAS795 | ABID97_RS03290 | | LysR family transcriptional regulator | sig. | 26 | 88 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS24750 | | LysR family transcriptional regulator | insig. | 25 | 84 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS24750 | | LysR family transcriptional regulator | insig. | 25 | 84 |
| | Pseudomonas simiae WCS417 | PS417_23090 | | LysR family transcriptional regulator | insig. | 24 | 97 |
| | Pseudomonas putida KT2440 | PP_0371 | | Transcriptional regulator, LysR family | insig. | 24 | 89 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS27600 | | LysR family transcriptional regulator | cofit | 24 | 93 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS27600 | | LysR family transcriptional regulator | strong | 24 | 93 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0767 | | transcriptional regulator, LysR family | insig. | 29 | 80 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0767 | | transcriptional regulator, LysR family | insig. | 29 | 80 |
| | Pseudomonas sp. BP01 | JOY50_RS17975 | | LysR family transcriptional regulator | insig. | 25 | 89 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3312 | | transcriptional regulator, LysR family | sig. | 24 | 96 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3312 | | transcriptional regulator, LysR family | insig. | 24 | 96 |
| | Pseudomonas sp. BP01 | JOY50_RS17080 | | LysR family transcriptional regulator | insig. | 25 | 80 |
| | Phaeobacter inhibens DSM 17395 | PGA1_78p00040 | | hydrogen peroxide-inducible genes activator OxyR | no data | 29 | 79 |
| | Pseudomonas orientalis W4I3 | QF045_RS25315 | | LysR family transcriptional regulator | insig. | 26 | 84 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_05312 | | HTH-type transcriptional regulator CynR | cofit | 24 | 93 |
| | Escherichia coli ECOR38 | HEPCGN_20725 | hcaR | DNA-binding transcriptional regulator HcaR | insig. | 23 | 79 |
| | Pseudomonas orientalis W4I3 | QF045_RS21080 | | LysR family transcriptional regulator | cofit | 24 | 93 |
| | Pseudomonas simiae WCS417 | PS417_18940 | | LysR family transcriptional regulator | insig. | 24 | 96 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS23515 | | LysR family transcriptional regulator | insig. | 29 | 79 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS23515 | | LysR family transcriptional regulator | insig. | 29 | 79 |
| | Pseudomonas stutzeri RCH2 | Psest_0368 | | Transcriptional regulator | insig. | 27 | 87 |
| | Pseudomonas segetis P6 | ACVTMO_RS15235 | | LysR family transcriptional regulator | insig. | 26 | 79 |
| | Escherichia coli BL21 | ECD_02429 | | hca operon transcriptional regulator | insig. | 23 | 79 |
| | Escherichia coli ECRC100 | OKFHMN_21585 | hcaR | DNA-binding transcriptional regulator HcaR | insig. | 23 | 79 |
| | Escherichia coli ECRC101 | MCAODC_12115 | hcaR | DNA-binding transcriptional regulator HcaR | insig. | 23 | 79 |
| | Escherichia coli ECRC102 | NIAGMN_19355 | hcaR | DNA-binding transcriptional regulator HcaR | insig. | 23 | 79 |
| | Escherichia coli ECRC98 | JDDGAC_25260 | hcaR | DNA-binding transcriptional regulator HcaR | insig. | 23 | 79 |