Homologs of PagCFBP13505_RS12225 from Pantoea agglomerans CFBP13505 P0401

RNA polymerase sigma factor
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS12225 RNA polymerase sigma factor cofit 100 100
o Pantoea sp. MT58 IAI47_21640 sigma-70 family RNA polymerase sigma factor insig. 93 100
o Dickeya dadantii 3937 DDA3937_RS11055 sigma-70 family RNA polymerase sigma factor insig. 75 100
o Dickeya dianthicola 67-19 HGI48_RS11075 sigma-70 family RNA polymerase sigma factor insig. 75 100
o Pectobacterium carotovorum WPP14 HER17_RS09715 sigma-70 family RNA polymerase sigma factor cofit 71 99
o Enterobacter asburiae PDN3 EX28DRAFT_2729 RNA polymerase sigma factor, sigma-70 family insig. 72 99
o Enterobacter sp. TBS_079 MPMX20_03520 ECF RNA polymerase sigma factor EcfG insig. 69 99
o Rahnella sp. WP5 EX31_RS05375 sigma-70 family RNA polymerase sigma factor insig. 61 100
  Rhizobium sp. OAE497 ABIE40_RS03400 RNA polymerase sigma factor insig. 62 85
o Serratia liquefaciens MT49 IAI46_22980 RNA polymerase sigma factor insig. 64 83
  Azospirillum sp. SherDot2 MPMX19_05043 hypothetical protein insig. 54 86
o Paraburkholderia graminis OAS925 ABIE53_003943 RNA polymerase sigma-70 factor (ECF subfamily) sig. 47 89
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 48 87
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05043 RNA polymerase sigma-70 factor, ECF subfamily no data 47 89
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 44 90
o Paraburkholderia sabiae LMG 24235 QEN71_RS32245 RNA polymerase sigma factor insig. 44 97
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2959 RNA polymerase sigma-54 factor RpoN insig. 54 70
o Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 38 90
o Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 37 96
o Azospirillum brasilense Sp245 AZOBR_RS23735 RNA polymerase no data 40 91
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 42 85
  Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 39 91
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01554 RNA polymerase sigma-70 factor, ECF subfamily insig. 39 88
  Paraburkholderia sabiae LMG 24235 QEN71_RS36705 RNA polymerase sigma factor insig. 43 89
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 37 91
  Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 35 91
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 38 91
o Sphingobium sp. HT1-2 GFF4551 hypothetical protein cofit 38 87
  Rhizobium sp. OAE497 ABIE40_RS20320 sigma-70 family RNA polymerase sigma factor insig. 39 91
  Sphingobium sp. HT1-2 GFF1466 RNA polymerase sigma-54 factor RpoN cofit 37 86
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12805 RNA polymerase sigma factor strong 36 90
  Sphingobium sp. HT1-2 GFF2028 hypothetical protein cofit 39 86
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3411 RNA polymerase sigma factor, sigma-70 family insig. 36 90
  Sphingobium sp. HT1-2 GFF2317 RNA polymerase ECF-type sigma factor cofit 40 91
o Phaeobacter inhibens DSM 17395 PGA1_78p00070 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup' no data 35 86
o Phocaeicola dorei CL03T12C01 ABI39_RS07815 RNA polymerase sigma factor strong 35 90
  Sinorhizobium meliloti 1021 SMc02713 RNA polymerase sigma-E factor (sigma-24) protein strong 32 91
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4350 RNA polymerase sigma-54 factor RpoN insig. 38 90
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1191 RNA polymerase sigma factor, sigma-70 family insig. 33 83
o Agrobacterium fabrum C58 Atu1485 ECF family sigma factor insig. 37 86
o Variovorax sp. SCN45 GFF215 RNA polymerase sigma-54 factor RpoN insig. 37 89
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02635 RNA polymerase sigma factor insig. 39 86
  Xanthobacter sp. DMC5 GFF2321 ECF RNA polymerase sigma factor EcfG no data 34 91
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 38 92
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 37 91
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 40 91
o Bacteroides thetaiotaomicron VPI-5482 BT2569 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 33 93
  Bacteroides thetaiotaomicron VPI-5482 BT1197 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 34 86
  Bacteroides thetaiotaomicron VPI-5482 BT3457 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 33 93
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 35 91
  Phaeobacter inhibens DSM 17395 PGA1_c27070 RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) insig. 36 91
o Bacteroides ovatus ATCC 8483 BACOVA_02205 Sigma-70 region 2 sig. 32 86
o Variovorax sp. OAS795 ABID97_RS16445 sigma-70 family RNA polymerase sigma factor no data 37 89
o Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 32 92
  Bacteroides ovatus ATCC 8483 BACOVA_01848 Sigma-70 region 2 strong 32 93
  Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 36 90
o Rhodanobacter sp. FW510-T8 OKGIIK_06725 rpoE RNA polymerase subunit sigma-70 insig. 40 76
o Rhodanobacter denitrificans MT42 LRK55_RS00300 RNA polymerase sigma factor insig. 40 76
  Bacteroides ovatus ATCC 8483 BACOVA_03979 Sigma-70 region 2 strong 33 86
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS09585 RNA polymerase sigma factor no data 39 76
o Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 32 92
o Bacteroides stercoris CC31F HMPREF1181_RS02840 RNA polymerase sigma factor sig. 32 86
  Azospirillum sp. SherDot2 MPMX19_01197 ECF RNA polymerase sigma factor EcfG insig. 37 90
  Sphingobium sp. HT1-2 GFF4975 RNA polymerase ECF-type sigma factor cofit 36 91
  Paraburkholderia sabiae LMG 24235 QEN71_RS23005 sigma-70 family RNA polymerase sigma factor insig. 39 84
  Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 31 91
  Sphingobium sp. HT1-2 GFF5151 RNA polymerase ECF-type sigma factor cofit 36 91
  Phocaeicola dorei CL03T12C01 ABI39_RS17450 RNA polymerase sigma factor strong 32 86
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03770 RNA polymerase sigma factor strong 32 86
o Alteromonas macleodii MIT1002 MIT1002_03872 RNA polymerase sigma factor SigM insig. 35 92
  Azospirillum brasilense Sp245 AZOBR_RS11020 RNA polymerase subunit sigma-70 no data 39 83
  Azospirillum sp. SherDot2 MPMX19_00923 hypothetical protein insig. 37 89
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS00565 RNA polymerase sigma factor insig. 38 70
o Pseudomonas sp. SVBP6 COO64_RS10855 sigma-70 family RNA polymerase sigma factor insig. 37 96
  Bacteroides stercoris CC31F HMPREF1181_RS16950 RNA polymerase sigma factor strong 30 86
o Pseudomonas fluorescens FW300-N2C3 AO356_01625 RNA polymerase subunit sigma-24 insig. 35 90
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2200 RNA polymerase sigma-54 factor RpoN sig. 35 90
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 36 91
  Sphingobium sp. HT1-2 GFF5325 RNA polymerase ECF-type sigma factor cofit 35 86
o Magnetospirillum magneticum AMB-1 AMB_RS13315 hypothetical protein insig. 38 85
  Azospirillum brasilense Sp245 AZOBR_RS14755 RNA polymerase sigma-70 factor insig. 37 89
o Pseudomonas sp. DMC3 GFF1465 ECF RNA polymerase sigma factor EcfG insig. 34 90
o Pseudomonas sp. BP01 JOY50_RS05860 sigma-70 family RNA polymerase sigma factor no data 33 96
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 33 90
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0287 RNA polymerase sigma factor, sigma-70 family strong 28 89
o Pseudomonas fluorescens FW300-N2E3 AO353_20305 RNA polymerase subunit sigma-24 no data 35 91
o Pseudomonas lactucae CFBP13502 GEMAOFIL_03722 ECF RNA polymerase sigma factor EcfG no data 37 89
o Pseudomonas simiae WCS417 PS417_17070 RNA polymerase subunit sigma-24 insig. 36 90
  Bacteroides thetaiotaomicron VPI-5482 BT1572 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 28 86
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3977 RNA polymerase sigma-54 factor RpoN insig. 35 90
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 30 87
o Pseudomonas putida KT2440 PP_2888 putative ECF sigma factor PrtI no data 35 96
o Pseudomonas fluorescens SBW25 PFLU_RS19010 sigma-70 family RNA polymerase sigma factor insig. 36 90
o Pseudomonas fluorescens SBW25-INTG PFLU_RS19010 sigma-70 family RNA polymerase sigma factor sig. 36 90
  Cupriavidus basilensis FW507-4G11 RR42_RS32410 RNA polymerase subunit sigma-24 no data 34 89
  Bacteroides thetaiotaomicron VPI-5482 BT2383 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 31 93
  Rhizobium sp. OAE497 ABIE40_RS27415 sigma-70 family RNA polymerase sigma factor insig. 30 92
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19215 RNA polymerase subunit sigma sig. 30 88
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16675 hypothetical protein insig. 31 81
  Bacteroides ovatus ATCC 8483 BACOVA_04312 Sigma-70 region 2 insig. 29 86