Homologs of PFR28_02347 from Pseudomonas sp. RS175

Xylose operon regulatory protein
SEED: Xylose activator XylR (AraC family)
KEGG: LacI family transcriptional regulator

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas sp. RS175 PFR28_02347 Xylose operon regulatory protein strong 100 100
o Pseudomonas fluorescens FW300-N2C3 AO356_28495 AraC family transcriptional regulator strong 95 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1453 Xylose activator XylR (AraC family) insig. 95 100
o Pseudomonas syringae pv. syringae B728a Psyr_2882 transcriptional regulator, AraC family insig. 92 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2882 transcriptional regulator, AraC family insig. 92 100
o Pseudomonas simiae WCS417 PS417_10950 AraC family transcriptional regulator strong 91 99
o Pseudomonas fluorescens SBW25 PFLU_RS11310 DNA-binding transcriptional regulator strong 92 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS11310 DNA-binding transcriptional regulator strong 92 100
o Herbaspirillum seropedicae SmR1 HSERO_RS22455 AraC family transcriptional regulator strong 70 98
o Paraburkholderia graminis OAS925 ABIE53_004928 LacI family transcriptional regulator strong 66 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS25880 DNA-binding transcriptional regulator strong 67 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS18215 DNA-binding transcriptional regulator sig. 67 98
o Burkholderia phytofirmans PsJN BPHYT_RS32830 AraC family transcriptional regulator insig. 66 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03875 transcriptional regulator, AraC family insig. 66 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS14435 DNA-binding transcriptional regulator insig. 60 97
o Pantoea sp. MT58 IAI47_00175 XylR family transcriptional regulator insig. 47 97
o Rahnella sp. WP5 EX31_RS09745 XylR family transcriptional regulator strong 47 97
o Dickeya dianthicola ME23 DZA65_RS00330 DNA-binding transcriptional regulator insig. 48 97
o Dickeya dianthicola 67-19 HGI48_RS00330 XylR family transcriptional regulator insig. 48 97
o Dickeya dadantii 3937 DDA3937_RS20915 DNA-binding transcriptional regulator insig. 47 97
o Serratia liquefaciens MT49 IAI46_00300 DNA-binding transcriptional regulator insig. 47 97
o Enterobacter asburiae PDN3 EX28DRAFT_3834 Transcriptional regulators insig. 47 97
o Enterobacter sp. TBS_079 MPMX20_00161 Xylose operon regulatory protein strong 46 97
o Escherichia coli BL21 ECD_03421 xylose divergent operon transcriptional activator insig. 46 97
o Escherichia coli ECOR27 NOLOHH_07880 xylR DNA-binding transcriptional regulator XylR insig. 46 97
o Escherichia coli ECOR38 HEPCGN_14820 xylR DNA-binding transcriptional regulator XylR cofit 46 97
o Escherichia coli ECRC101 OKFHMN_15935 xylR DNA-binding transcriptional regulator XylR insig. 46 97
o Escherichia coli ECRC101 MCAODC_06450 xylR DNA-binding transcriptional regulator XylR insig. 46 97
o Escherichia coli ECRC102 NIAGMN_13695 xylR DNA-binding transcriptional regulator XylR insig. 46 97
o Escherichia coli ECRC62 BNILDI_03665 xylR DNA-binding transcriptional regulator XylR insig. 46 97
o Escherichia coli ECRC98 JDDGAC_19565 xylR DNA-binding transcriptional regulator XylR no data 46 97
o Escherichia coli ECRC99 KEDOAH_12215 xylR DNA-binding transcriptional regulator XylR no data 46 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00135 Xylose operon regulatory protein insig. 46 97
o Escherichia coli Nissle 1917 ECOLIN_RS20410 D-xylose utilization transcriptional activator XylR cofit 46 97
o Escherichia coli BW25113 b3569 xylR DNA-binding transcriptional activator, xylose-binding (NCBI) strong 46 97
o Escherichia fergusonii Becca EFB2_00238 Xylose operon regulatory protein insig. 46 97
o Klebsiella michiganensis M5al BWI76_RS27045 XylR family transcriptional regulator strong 46 97
o Pectobacterium carotovorum WPP14 HER17_RS21065 XylR family transcriptional regulator insig. 46 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF442 Xylose activator XylR (AraC family) insig. 46 97
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3418 Transcriptional regulators insig. 24 98
o Bacteroides ovatus ATCC 8483 BACOVA_03406 transcriptional regulator, AraC family insig. 24 98
o Bacteroides thetaiotaomicron VPI-5482 BT3609 transcriptional regulator (NCBI ptt file) insig. 25 97
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2811 ABC-type sugar transport system, periplasmic component strong 26 50
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3073 Transcriptional regulators strong 30 56
  Pseudomonas sp. S08-1 OH686_18570 Transcriptional regulator, AraC family insig. 34 29
  Herbaspirillum seropedicae SmR1 HSERO_RS11895 AraC family transcriptional regulator insig. 29 25
  Paraburkholderia sabiae LMG 24235 QEN71_RS23380 GlxA family transcriptional regulator insig. 34 25
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06477 transcriptional regulator, AraC family insig. 34 25
  Serratia liquefaciens MT49 IAI46_16615 helix-turn-helix domain-containing protein insig. 32 31
  Burkholderia phytofirmans PsJN BPHYT_RS07690 AraC family transcriptional regulator sig. 33 25
  Paraburkholderia graminis OAS925 ABIE53_001768 transcriptional regulator GlxA family with amidase domain strong 33 25
  Paraburkholderia sabiae LMG 24235 QEN71_RS11030 GlxA family transcriptional regulator insig. 29 38
  Paraburkholderia sabiae LMG 24235 QEN71_RS25305 LacI family DNA-binding transcriptional regulator insig. 27 44
  Sinorhizobium meliloti 1021 SM_b21706 LacI family transcriptional regulator insig. 30 52
  Burkholderia phytofirmans PsJN BPHYT_RS04680 LacI family transcriptional regulator insig. 27 44
  Alteromonas macleodii MIT1002 MIT1002_00363 HTH-type transcriptional repressor CytR cofit 27 56
  Burkholderia phytofirmans PsJN BPHYT_RS10510 AraC family transcriptional regulator no data 29 26
  Pantoea sp. MT58 IAI47_00375 ribose operon transcriptional repressor RbsR strong 30 41
  Shewanella amazonensis SB2B Sama_0294 LacI family transcription regulator (RefSeq) strong 24 49
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11205 hybrid sensor histidine kinase/response regulator insig. 30 26
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00103 transcriptional regulator, LacI family insig. 27 44
  Alteromonas macleodii MIT1002 MIT1002_02553 Carnitine catabolism transcriptional activator insig. 29 26
  Ralstonia solanacearum GMI1000 RS_RS05455 GlxA family transcriptional regulator sig. 29 38
  Rhodanobacter sp. FW510-T8 OKGIIK_01620 AraC family transcriptional regulator cofit 30 28
  Paraburkholderia sabiae LMG 24235 QEN71_RS37540 AraC family transcriptional regulator cofit 28 28
  Paraburkholderia sabiae LMG 24235 QEN71_RS35910 LacI family DNA-binding transcriptional regulator insig. 30 53
  Bacteroides ovatus ATCC 8483 BACOVA_02049 sugar-binding domain protein strong 24 50
  Enterobacter asburiae PDN3 EX28DRAFT_4029 transcriptional regulator, LacI family strong 31 37
  Burkholderia phytofirmans PsJN BPHYT_RS25095 AraC family transcriptional regulator insig. 27 38
  Paraburkholderia sabiae LMG 24235 QEN71_RS08030 GlxA family transcriptional regulator insig. 32 28
  Paraburkholderia graminis OAS925 ABIE53_002581 transcriptional regulator GlxA family with amidase domain insig. 28 26
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02454 transcriptional regulator, AraC family with amidase-like domain insig. 27 38
  Paraburkholderia graminis OAS925 ABIE53_006161 transcriptional regulator GlxA family with amidase domain insig. 27 38
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11435 two-component regulator propeller domain-containing protein insig. 41 20
  Castellaniella sp019104865 MT123 ABCV34_RS14850 helix-turn-helix domain-containing protein insig. 35 25
  Pseudomonas stutzeri RCH2 Psest_3080 AraC-type DNA-binding domain-containing proteins sig. 32 30
  Caulobacter crescentus NA1000 CCNA_01195 LacI-family transcriptional regulator strong 29 59
  Caulobacter crescentus NA1000 Δfur CCNA_01195 LacI-family transcriptional regulator cofit 29 59
  Dickeya dianthicola ME23 DZA65_RS16225 LacI family transcriptional regulator sig. 27 43
  Escherichia coli BL21 ECD_03791 transcriptional activator of rhaBAD and rhaT insig. 27 33
  Escherichia coli ECOR27 NOLOHH_06020 rhaS HTH-type transcriptional activator RhaS cofit 27 33
  Escherichia coli ECOR38 HEPCGN_12530 rhaS HTH-type transcriptional activator RhaS insig. 27 33
  Escherichia coli ECRC62 BNILDI_05505 rhaS HTH-type transcriptional activator RhaS insig. 27 33
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04145 HTH-type transcriptional activator RhaS insig. 27 33
  Escherichia coli BW25113 b3905 rhaS DNA-binding transcriptional activator, L-rhamnose-binding (NCBI) insig. 27 33
  Escherichia fergusonii Becca EFB2_04712 HTH-type transcriptional activator RhaS insig. 27 33
  Escherichia coli ECRC101 OKFHMN_13890 rhaS HTH-type transcriptional activator RhaS insig. 27 33
  Escherichia coli ECRC101 MCAODC_04390 rhaS HTH-type transcriptional activator RhaS insig. 27 33
  Escherichia coli ECRC102 NIAGMN_11645 rhaS HTH-type transcriptional activator RhaS insig. 27 33
  Escherichia coli ECRC98 JDDGAC_17515 rhaS HTH-type transcriptional activator RhaS no data 27 33
  Escherichia coli ECRC99 KEDOAH_14265 rhaS HTH-type transcriptional activator RhaS no data 27 33
  Escherichia coli Nissle 1917 ECOLIN_RS22500 HTH-type transcriptional activator RhaS insig. 27 33
  Dickeya dianthicola 67-19 HGI48_RS15405 LacI family DNA-binding transcriptional regulator insig. 27 43
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_13975 LacI family transcriptional regulator strong 27 43
  Bacteroides thetaiotaomicron VPI-5482 BT0267 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) sig. 35 20
  Pseudomonas putida KT2440 PP_2960 transcriptional regulator, AraC family sig. 30 29
  Enterobacter sp. TBS_079 MPMX20_02241 HTH-type transcriptional activator RhaS sig. 29 25
  Paraburkholderia graminis OAS925 ABIE53_001217 LacI family repressor for deo operon, udp, cdd, tsx, nupC, and nupG insig. 27 44
  Variovorax sp. SCN45 GFF2137 Ribose operon repressor strong 26 57
  Pseudomonas sp. RS175 PFR28_00233 HTH-type transcriptional activator RhaS insig. 34 24