| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_05311 | | 4,4'-diapolycopene oxygenase | insig. | 100 | 100 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS10340 | | phytoene desaturase | insig. | 89 | 100 |
| o | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS19065 | | 1-hydroxycarotenoid 3,4-desaturase CrtD | insig. | 32 | 94 |
| | Azospirillum brasilense Sp245 | AZOBR_RS10345 | | phytoene desaturase | sig. | 34 | 97 |
| o | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_17000 | | phytoene dehydrogenase | insig. | 33 | 92 |
| | Azospirillum sp. SherDot2 | MPMX19_05312 | | 4,4'-diapophytoene desaturase (4,4'-diapolycopene-forming) | insig. | 33 | 93 |
| | Rhodopseudomonas palustris CGA009 | TX73_007770 | | phytoene desaturase | no data | 33 | 93 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS14250 | | phytoene desaturase | cofit | 31 | 96 |
| | Pantoea sp. MT58 | IAI47_20665 | | phytoene desaturase | insig. | 31 | 96 |
| | Rhodospirillum rubrum S1H | Rru_A0493 | | Phytoene desaturase (NCBI) | strong | 32 | 94 |
| | Bosea sp. OAE506 | ABIE41_RS09845 | | phytoene desaturase | insig. | 32 | 94 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS04375 | | phytoene desaturase | insig. | 31 | 96 |
| | Pseudomonas stutzeri RCH2 | Psest_0404 | | phytoene desaturase | insig. | 32 | 96 |
| o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS25315 | | phytoene dehydrogenase | insig. | 27 | 92 |
| | Bosea sp. OAE506 | ABIE41_RS09870 | | 1-hydroxycarotenoid 3,4-desaturase CrtD | insig. | 33 | 97 |
| | Sphingobium sp. HT1-2 | GFF788 | | Phytoene desaturase (lycopene-forming) (EC 1.3.99.31) | cofit | 30 | 97 |
| | Xanthobacter sp. DMC5 | GFF434 | | Phytoene desaturase (lycopene-forming) | insig. | 29 | 96 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3508 | | Zeta-phytoene desaturase (RefSeq) | sig. | 29 | 91 |
| | Rhodopseudomonas palustris CGA009 | TX73_007805 | | phytoene desaturase family protein | sig. | 32 | 96 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_10910 | | phytoene dehydrogenase | sig. | 28 | 96 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS16545 | | NAD(P)/FAD-dependent oxidoreductase | insig. | 28 | 95 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_2417 | | phytoene desaturase | strong | 29 | 94 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1477 | | phytoene desaturase | insig. | 25 | 92 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS24235 | | phytoene dehydrogenase | insig. | 27 | 91 |
| | Cellulophaga baltica 18 | M666_RS09515 | | phytoene desaturase family protein | cofit | 24 | 96 |
| | Rhodospirillum rubrum S1H | Rru_A2984 | | CrtD protein (NCBI) | sig. | 31 | 93 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3513 | | Zeta-phytoene desaturase (RefSeq) | sig. | 30 | 96 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_c25320 | | Phytoene dehydrogenase and related proteins | insig. | 26 | 97 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS16540 | | carotene isomerase | strong | 25 | 96 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1246 | crtiso | carotene isomerase | strong | 25 | 96 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS15345 | | FAD-dependent oxidoreductase | strong | 26 | 93 |
| | Azospirillum brasilense Sp245 | AZOBR_RS06660 | | phytoene dehydrogenase | insig. | 29 | 81 |
| o | Marinobacter adhaerens HP15 | HP15_4014 | | FAD dependent oxidoreductase | insig. | 24 | 90 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS03235 | | C-3',4' desaturase CrtD | cofit | 24 | 96 |
| | Caulobacter crescentus NA1000 | CCNA_03221 | | phytoene dehydrogenase | insig. | 23 | 92 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03221 | | phytoene dehydrogenase | cofit | 23 | 92 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1723 | | carotene isomerase | insig. | 29 | 55 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_1824 | | Phytoene dehydrogenase and related proteins | insig. | 23 | 55 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_0538 | | Phytoene dehydrogenase and related proteins | insig. | 25 | 92 |
| | Rhodopseudomonas palustris CGA009 | TX73_018200 | | NAD(P)/FAD-dependent oxidoreductase | insig. | 24 | 92 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3425 | | Beta-carotene ketolase (EC 1.14.-.-) | insig. | 21 | 96 |
| | Rhodopseudomonas palustris CGA009 | TX73_002085 | | NAD(P)/FAD-dependent oxidoreductase | insig. | 26 | 63 |
| | Ralstonia solanacearum GMI1000 | RS_RS09250 | | NAD(P)/FAD-dependent oxidoreductase | sig. | 24 | 92 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0970 | crtD | phytoene dehydrogenase-like | sig. | 25 | 92 |
| | Marinobacter adhaerens HP15 | HP15_17 | | FAD-dependent oxidoreductase | sig. | 23 | 95 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1875 | | Protoporphyrinogen oxidase (EC 1.3.3.4) | insig. | 45 | 11 |
| | Acinetobacter baumannii LAC-4 | RR41_RS09370 | | NADPH-dependent 2,4-dienoyl-CoA reductase | insig. | 63 | 7 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS21495 | | FAD-dependent oxidoreductase | no data | 47 | 11 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_4161 | | COG3380: Amine oxidase, flavin-containing | insig. | 42 | 12 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_2727 | | Beta-carotene ketolase (EC 1.14.-.-) | insig. | 22 | 90 |
| | Variovorax sp. SCN45 | GFF591 | | Renalase (EC 1.6.3.5), oxidases 1,2-dihydro- and 1,6-dihydro- beta-NAD(P)H isomers back to NAD(P) | insig. | 36 | 15 |
| | Sphingobium sp. HT1-2 | GFF3280 | | hypothetical protein | cofit | 45 | 10 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_01175 | | FAD dependent oxidoreductase | insig. | 21 | 54 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_05242 | | 4Fe-4S binding domain protein | insig. | 38 | 13 |
| | Pectobacterium carotovorum WPP14 | HER17_RS18675 | | NADPH-dependent 2,4-dienoyl-CoA reductase | cofit | 39 | 14 |
| | Variovorax sp. OAS795 | ABID97_RS18020 | | FAD-dependent oxidoreductase | insig. | 42 | 11 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_01575 | | protoporphyrinogen oxidase | insig. | 30 | 19 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS08895 | | FAD-dependent oxidoreductase | strong | 58 | 7 |
| | Marinobacter adhaerens HP15 | HP15_1766 | | FAD dependent oxidoreductase | insig. | 45 | 11 |
| | Acinetobacter radioresistens SK82 | MPMX26_02255 | | 2,4-dienoyl-CoA reductase | no data | 55 | 7 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_3152 | | NADH:flavin oxidoreductases, Old Yellow Enzyme family | insig. | 39 | 14 |
| | Methanococcus maripaludis JJ | MMJJ_RS04655 | | FAD-dependent oxidoreductase | strong | 38 | 11 |
| | Methanococcus maripaludis S2 | MMP_RS00835 | | FAD-dependent oxidoreductase | no data | 38 | 11 |
| | Variovorax sp. OAS795 | ABID97_RS18590 | | NAD(P)/FAD-dependent oxidoreductase | insig. | 33 | 19 |
| | Enterobacter sp. TBS_079 | MPMX20_03994 | | 2,4-dienoyl-CoA reductase | insig. | 30 | 25 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS13185 | | 2,4-dienoyl-CoA reductase | sig. | 58 | 7 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5211 | | Possible monoamine oxidase | insig. | 39 | 15 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2894 | | FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) | no data | 26 | 21 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS09840 | | NADPH-dependent 2 4-dienoyl-CoA reductase | insig. | 40 | 14 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0125 | | NADH:flavin oxidoreductase/NADH oxidase (RefSeq) | insig. | 57 | 7 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0965 | | amine oxidase, flavin-containing | insig. | 41 | 11 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0965 | | amine oxidase, flavin-containing | insig. | 41 | 11 |
| | Variovorax sp. SCN45 | GFF603 | | Tricarballylate dehydrogenase, TcuA | insig. | 40 | 11 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_29505 | | NADPH-dependent 2 4-dienoyl-CoA reductase | insig. | 40 | 14 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS11330 | | 9,9'-di-cis-zeta-carotene desaturase | no data | 31 | 18 |
| | Escherichia coli ECOR38 | HEPCGN_17420 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | insig. | 33 | 18 |
| | Xanthobacter sp. DMC5 | GFF4802 | | Metal reductase | insig. | 48 | 9 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_24455 | | FAD-dependent oxidoreductase | insig. | 44 | 9 |
| | Escherichia coli BL21 | ECD_02950 | | 2,4-dienoyl-CoA reductase, NADH and FMN-linked | insig. | 33 | 18 |
| | Escherichia coli ECOR27 | NOLOHH_10370 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | insig. | 33 | 18 |
| | Escherichia coli BW25113 | b3081 | fadH | 2,4-dienoyl-CoA reductase, NADH and FMN-linked (NCBI) | insig. | 33 | 18 |
| | Escherichia coli ECRC100 | OKFHMN_18575 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | insig. | 33 | 18 |
| | Escherichia coli ECRC101 | MCAODC_09090 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | insig. | 33 | 18 |
| | Escherichia coli ECRC102 | NIAGMN_16340 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | insig. | 33 | 18 |
| | Escherichia coli ECRC98 | JDDGAC_22210 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | insig. | 33 | 18 |
| | Escherichia coli ECRC99 | KEDOAH_09570 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | no data | 33 | 18 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS05490 | | NADPH-dependent 2,4-dienoyl-CoA reductase | insig. | 58 | 7 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS52205 | | NADPH-dependent 2 4-dienoyl-CoA reductase | insig. | 55 | 7 |
| | Methylophilus sp. DMC18 | GFF2016 | | Thiamine thiazole synthase | insig. | 57 | 7 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1856 | | phytoene dehydrogenase family protein | insig. | 35 | 13 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2133 | | TcuA: flavoprotein used to oxidize tricarballylate to cis-aconitate | insig. | 42 | 11 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2209 | | 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) | insig. | 34 | 16 |