| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_03386 | | HTH-type transcriptional activator RhaR | insig. | 100 | 100 |
| o | Xanthobacter sp. DMC5 | GFF2001 | | HTH-type transcriptional activator RhaS | insig. | 53 | 94 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_3718 | | transcriptional regulator, AraC family (RefSeq) | cofit | 44 | 96 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_26625 | | DNA-binding protein | no data | 47 | 95 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3708 | | transcriptional regulator, AraC family (RefSeq) | insig. | 36 | 94 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_97 | | Transcriptional regulator, AraC family | insig. | 47 | 57 |
| o | Bosea sp. OAE506 | ABIE41_RS18730 | | helix-turn-helix domain-containing protein | insig. | 33 | 96 |
| o | Variovorax sp. OAS795 | ABID97_RS27260 | | AraC family transcriptional regulator | no data | 30 | 94 |
| | Enterobacter sp. TBS_079 | MPMX20_02552 | | HTH-type transcriptional activator RhaR | insig. | 26 | 75 |
| | Pseudomonas sp. DMC3 | GFF1052 | | HTH-type transcriptional activator RhaR | cofit | 38 | 34 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4154 | | Transcriptional regulator, AraC family | insig. | 39 | 34 |
| | Pseudomonas stutzeri RCH2 | Psest_2061 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 35 | 35 |
| | Pseudomonas sp. RS175 | PFR28_01504 | | HTH-type transcriptional activator RhaR | insig. | 35 | 35 |
| | Sinorhizobium meliloti 1021 | SMa0319 | | AraC family transcriptional regulator | insig. | 34 | 37 |
| | Pseudomonas sp. DMC3 | GFF1007 | | HTH-type transcriptional activator RhaR | cofit | 26 | 84 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1249 | | Transcriptional regulator, AraC family | insig. | 34 | 54 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02999 | | transcriptional regulator, AraC family | insig. | 33 | 48 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3667 | | transcriptional regulator (NCBI ptt file) | insig. | 34 | 35 |
| | Paraburkholderia graminis OAS925 | ABIE53_005062 | | AraC family transcriptional regulator | sig. | 28 | 72 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1614 | | transcriptional regulator, AraC family (RefSeq) | insig. | 47 | 26 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS17720 | | AraC family transcriptional regulator | insig. | 25 | 90 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS17720 | | AraC family transcriptional regulator | insig. | 25 | 90 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06477 | | transcriptional regulator, AraC family | insig. | 33 | 38 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS23380 | | GlxA family transcriptional regulator | insig. | 32 | 39 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS06070 | | helix-turn-helix domain-containing protein | insig. | 28 | 35 |
| | Pseudomonas segetis P6 | ACVTMO_RS16320 | | AraC family transcriptional regulator | insig. | 28 | 85 |
| | Pseudomonas stutzeri RCH2 | Psest_1369 | | AraC-type DNA-binding domain-containing proteins | insig. | 26 | 84 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS22565 | | AraC family transcriptional regulator | insig. | 37 | 32 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_26250 | | AraC family transcriptional regulator | insig. | 34 | 35 |
| | Dickeya dadantii 3937 | DDA3937_RS14520 | | AraC family transcriptional regulator | insig. | 27 | 86 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS07690 | | AraC family transcriptional regulator | sig. | 33 | 38 |
| | Paraburkholderia graminis OAS925 | ABIE53_005408 | | AraC-like DNA-binding protein | insig. | 28 | 86 |
| | Paraburkholderia graminis OAS925 | ABIE53_001768 | | transcriptional regulator GlxA family with amidase domain | strong | 33 | 38 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_13545 | | AraC family transcriptional regulator | sig. | 28 | 48 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1125 | | Transcriptional regulator, AraC family | insig. | 33 | 38 |
| | Agrobacterium fabrum C58 | Atu4659 | | AraC family transcriptional regulator | strong | 36 | 36 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS34765 | | AraC family transcriptional regulator | insig. | 28 | 48 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS10705 | | response regulator | insig. | 34 | 29 |
| | Azospirillum sp. SherDot2 | MPMX19_04709 | | HTH-type transcriptional regulator CdhR | insig. | 32 | 35 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS14560 | | AraC family transcriptional regulator | insig. | 34 | 46 |
| | Azospirillum sp. SherDot2 | MPMX19_04745 | | HTH-type transcriptional regulator CdhR | insig. | 33 | 37 |
| | Enterobacter sp. TBS_079 | MPMX20_02241 | | HTH-type transcriptional activator RhaS | sig. | 33 | 34 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS03730 | | AraC family transcriptional regulator | insig. | 28 | 48 |
| | Pectobacterium carotovorum WPP14 | HER17_RS18865 | | AraC family transcriptional regulator | insig. | 26 | 69 |
| | Pseudomonas putida KT2440 | PP_3439 | | Transcriptional regulator, AraC family | insig. | 25 | 89 |
| | Azospirillum sp. SherDot2 | MPMX19_01511 | | HTH-type transcriptional activator RhaR | insig. | 36 | 36 |
| | Rhizobium sp. OAE497 | ABIE40_RS13855 | | AraC family transcriptional regulator | insig. | 34 | 34 |
| | Pseudomonas sp. S08-1 | OH686_05700 | | Transcriptional regulator, AraC family | insig. | 26 | 74 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3768 | | transcriptional regulator (NCBI ptt file) | strong | 31 | 35 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS01165 | | helix-turn-helix transcriptional regulator | insig. | 29 | 36 |
| | Sinorhizobium meliloti 1021 | SM_b20859 | | AraC family transcriptional regulator | insig. | 33 | 34 |
| | Agrobacterium fabrum C58 | Atu1081 | | transcriptional regulator, AraC family | insig. | 31 | 46 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03160 | | HTH-type transcriptional regulator CdhR | cofit | 27 | 48 |
| | Pseudomonas simiae WCS417 | PS417_14325 | | AraC family transcriptional regulator | insig. | 27 | 48 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4577 | | Transcriptional regulator, AraC family | insig. | 24 | 84 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_03606 | | transcriptional regulator, AraC family | strong | 31 | 35 |
| | Agrobacterium fabrum C58 | Atu4297 | | AraC family transcriptional regulator | strong | 27 | 87 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS17025 | | AraC family transcriptional regulator | strong | 26 | 87 |
| | Acinetobacter baumannii LAC-4 | RR41_RS06495 | | AraC family transcriptional regulator | insig. | 34 | 34 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS05725 | | response regulator | insig. | 29 | 37 |
| | Pseudomonas simiae WCS417 | PS417_15905 | | AraC family transcriptional regulator | insig. | 23 | 88 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS25180 | | AraC family transcriptional regulator | insig. | 34 | 34 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS13380 | mdrR1;inference=COORDINATES | transcriptional regulator MdrR1 | insig. | 31 | 49 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_20095 | | transcriptional regulator MdrR1 | insig. | 31 | 49 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS48680 | mdrR1;inference=COORDINATES | transcriptional regulator MdrR1 | strong | 31 | 49 |
| | Rhodopseudomonas palustris CGA009 | TX73_006805 | | AraC family transcriptional regulator | insig. | 24 | 53 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04325 | | transcriptional regulator, AraC family | insig. | 34 | 46 |
| | Sinorhizobium meliloti 1021 | SMa1822 | | hypothetical protein | insig. | 33 | 33 |
| | Rhodopseudomonas palustris CGA009 | TX73_005540 | | AraC family transcriptional regulator | insig. | 31 | 49 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1968 | | Arginine pathway regulatory protein ArgR, repressor of arg regulon | strong | 28 | 42 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3437 | | Arginine pathway regulatory protein ArgR, repressor of arg regulon | strong | 28 | 42 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5664 | | Arginine pathway regulatory protein ArgR, repressor of arg regulon | strong | 28 | 42 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS00290 | | helix-turn-helix transcriptional regulator | insig. | 28 | 36 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS17590 | | AraC family transcriptional regulator | insig. | 25 | 35 |
| | Pseudomonas segetis P6 | ACVTMO_RS09310 | argR | transcriptional regulator ArgR | cofit | 28 | 42 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS16220 | | GlxA family transcriptional regulator | insig. | 31 | 35 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS16220 | | GlxA family transcriptional regulator | strong | 31 | 35 |
| | Pseudomonas sp. BP01 | JOY50_RS15480 | | helix-turn-helix domain-containing protein | insig. | 29 | 53 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS23325 | | GlxA family transcriptional regulator | strong | 28 | 42 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS23325 | | GlxA family transcriptional regulator | strong | 28 | 42 |
| | Pseudomonas sp. DMC3 | GFF1069 | | HTH-type transcriptional activator RhaS | cofit | 28 | 75 |
| | Pseudomonas sp. DMC3 | GFF4881 | | HTH-type transcriptional regulator CdhR | cofit | 28 | 42 |
| | Pseudomonas sp. RS175 | PFR28_03284 | | HTH-type transcriptional regulator CdhR | strong | 28 | 42 |
| | Pseudomonas sp. SVBP6 | COO64_RS21620 | argR | transcriptional regulator ArgR | insig. | 28 | 42 |
| | Pseudomonas putida KT2440 | PP_4482 | | Transcriptional regulator, AraC family | strong | 28 | 42 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3566 | | transcriptional regulator, AraC family | insig. | 28 | 42 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3566 | | transcriptional regulator, AraC family | insig. | 28 | 42 |
| | Pseudomonas simiae WCS417 | PS417_21720 | | AraC family transcriptional regulator | no data | 28 | 42 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_18720 | | AraC family transcriptional regulator | strong | 28 | 42 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2910 | | transcriptional regulator (NCBI ptt file) | insig. | 27 | 34 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS29955 | | AraC family transcriptional regulator | insig. | 34 | 34 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_03562 | | ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein | insig. | 29 | 29 |
| | Pseudomonas sp. BP01 | JOY50_RS00985 | argR | transcriptional regulator ArgR | cofit | 28 | 42 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04486 | | HTH-type transcriptional regulator CdhR | cofit | 28 | 42 |
| | Pseudomonas orientalis W4I3 | QF045_RS23825 | | transcriptional regulator ArgR | insig. | 28 | 42 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_03035 | | AraC family transcriptional regulator | strong | 28 | 42 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS37540 | | AraC family transcriptional regulator | cofit | 25 | 68 |
| | Variovorax sp. SCN45 | GFF5573 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 36 | 30 |
| | Serratia liquefaciens MT49 | IAI46_05420 | | helix-turn-helix transcriptional regulator | insig. | 36 | 34 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS06080 | | response regulator transcription factor | insig. | 31 | 46 |