Homologs of GFF3854 from Variovorax sp. SCN45

FIG01269488: protein, clustered with ribosomal protein L32p
SEED: COG1399 protein, clustered with ribosomal protein L32p
KEGG: uncharacterized protein

63 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF3854 FIG01269488: protein, clustered with ribosomal protein L32p insig. 100 100
o Variovorax sp. OAS795 ABID97_RS08285 DUF177 domain-containing protein no data 78 98
o Acidovorax sp. GW101-3H11 Ac3H11_1583 COG1399 protein, clustered with ribosomal protein L32p sig. 56 94
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3330 COG1399 protein, clustered with ribosomal protein L32p no data 51 94
  Castellaniella sp019104865 MT123 ABCV34_RS08395 YceD family protein insig. 36 87
  Cupriavidus basilensis FW507-4G11 RR42_RS14125 metal-binding protein strong 41 78
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14405 metal-binding protein no data 34 90
  Ralstonia solanacearum UW163 UW163_RS11870 metal-binding protein no data 34 90
  Dechlorosoma suillum PS Dsui_2443 putative metal-binding protein, possibly nucleic-acid binding protein insig. 34 88
  Ralstonia solanacearum GMI1000 RS_RS05185 metal-binding protein insig. 33 90
  Ralstonia sp. UNC404CL21Col ABZR87_RS10120 YceD family protein insig. 38 69
  Herbaspirillum seropedicae SmR1 HSERO_RS09580 DNA-binding protein no data 34 80
  Paraburkholderia graminis OAS925 ABIE53_003052 uncharacterized protein sig. 34 94
  Shewanella oneidensis MR-1 SO2781 conserved hypothetical protein (NCBI ptt file) no data 30 87
  Klebsiella pneumoniae MKP103 KDGMDA_18670 23S rRNA accumulation protein YceD sig. 37 63
  Klebsiella pneumoniae MRSN742743 KFA93_RS00220 yceD;inference=COORDINATES 23S rRNA accumulation protein YceD no data 37 63
  Methylophilus sp. DMC18 GFF1262 hypothetical protein cofit 36 62
  Shewanella sp. ANA-3 Shewana3_2563 hypothetical protein (RefSeq) no data 30 87
  Paraburkholderia sabiae LMG 24235 QEN71_RS04530 DUF177 domain-containing protein insig. 39 75
  Ralstonia solanacearum PSI07 RPSI07_RS19055 metal-binding protein no data 34 90
  Shewanella loihica PV-4 Shew_1598 hypothetical protein (RefSeq) no data 29 87
  Escherichia coli BL21 ECD_01084 DUF177 family protein strong 38 63
  Escherichia fergusonii Becca EFB2_02887 Large ribosomal RNA subunit accumulation protein YceD strong 38 63
  Escherichia coli ECOR27 NOLOHH_21130 yceD 23S rRNA accumulation protein YceD sig. 38 63
  Escherichia coli ECOR38 HEPCGN_23880 yceD 23S rRNA accumulation protein YceD strong 38 63
  Escherichia coli ECRC100 OKFHMN_03600 yceD 23S rRNA accumulation protein YceD cofit 38 63
  Escherichia coli ECRC101 MCAODC_22960 yceD 23S rRNA accumulation protein YceD strong 38 63
  Escherichia coli ECRC102 NIAGMN_24230 yceD 23S rRNA accumulation protein YceD strong 38 63
  Escherichia coli ECRC62 BNILDI_19290 yceD 23S rRNA accumulation protein YceD strong 38 63
  Escherichia coli ECRC98 JDDGAC_07260 yceD 23S rRNA accumulation protein YceD strong 38 63
  Escherichia coli ECRC99 KEDOAH_24155 yceD 23S rRNA accumulation protein YceD no data 38 63
  Escherichia coli Nissle 1917 ECOLIN_RS06290 23S rRNA accumulation protein YceD cofit 38 63
  Escherichia coli BW25113 b1088 yceD hypothetical protein (NCBI) strong 38 63
  Klebsiella michiganensis M5al BWI76_RS11065 hypothetical protein no data 38 63
  Pectobacterium carotovorum WPP14 HER17_RS08625 23S rRNA accumulation protein YceD insig. 35 63
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02578 Large ribosomal RNA subunit accumulation protein YceD insig. 36 63
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04346 uncharacterized protein insig. 34 94
  Burkholderia phytofirmans PsJN BPHYT_RS14450 hypothetical protein sig. 33 94
  Pantoea sp. MT58 IAI47_12095 23S rRNA accumulation protein YceD no data 37 65
  Enterobacter asburiae PDN3 EX28DRAFT_1841 Predicted metal-binding, possibly nucleic acid-binding protein insig. 37 63
  Dickeya dadantii 3937 DDA3937_RS13145 23S rRNA accumulation protein YceD strong 35 63
  Dickeya dianthicola ME23 DZA65_RS13680 23S rRNA accumulation protein YceD no data 35 63
  Pseudomonas aeruginosa MRSN321 DY961_RS02120 YceD family protein no data 31 84
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS12155 yceD 23S rRNA accumulation protein YceD cofit 36 65
  Enterobacter sp. TBS_079 MPMX20_01768 Large ribosomal RNA subunit accumulation protein YceD sig. 36 63
  Pseudomonas aeruginosa PA14 IKLFDK_15115 metal-binding protein strong 31 84
  Pseudomonas aeruginosa PUPa3 DQ20_RS33465 DUF177 domain-containing protein no data 31 84
  Erwinia amylovora T8 OLJFJH_15555 23S rRNA accumulation protein YceD sig. 36 63
  Dickeya dianthicola 67-19 HGI48_RS13210 23S rRNA accumulation protein YceD insig. 34 63
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3370 COG1399 protein, clustered with ribosomal protein L32p cofit 36 63
  Pseudomonas stutzeri RCH2 Psest_1684 Predicted metal-binding, possibly nucleic acid-binding protein no data 33 63
  Shewanella amazonensis SB2B Sama_1985 hypothetical protein (RefSeq) no data 33 65
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_00705 yceD 23S rRNA accumulation protein YceD no data 36 63
  Erwinia tracheiphila SCR3 LU632_RS14845 yceD 23S rRNA accumulation protein YceD insig. 36 63
  Serratia liquefaciens MT49 IAI46_09765 23S rRNA accumulation protein YceD no data 33 63
  Pseudomonas segetis P6 ACVTMO_RS10290 YceD family protein no data 32 86
  Rahnella sp. WP5 EX31_RS24410 23S rRNA accumulation protein YceD cofit 34 63
  Pseudomonas sp. RS175 PFR28_03014 Large ribosomal RNA subunit accumulation protein YceD no data 29 86
  Acinetobacter baumannii LAC-4 RR41_RS15190 DUF177 domain-containing protein strong 32 61
  Acinetobacter radioresistens SK82 MPMX26_02444 Large ribosomal RNA subunit accumulation protein YceD no data 27 92
  Pseudomonas sp. S08-1 OH686_22120 protein, clustered with ribosomal protein L32p no data 32 53
  Alteromonas macleodii MIT1002 MIT1002_01728 hypothetical protein no data 29 62
  Lysobacter sp. OAE881 ABIE51_RS13965 YceD family protein no data 28 91