Homologs of GFF3691 from Sphingobium sp. HT1-2

RNA polymerase ECF-type sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF3691 RNA polymerase ECF-type sigma factor cofit 100 100
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 38 75
  Ralstonia solanacearum GMI1000 RS_RS14615 RNA polymerase sigma factor insig. 43 77
  Sphingobium sp. HT1-2 GFF4091 hypothetical protein insig. 37 75
  Ralstonia solanacearum PSI07 RPSI07_RS10560 RNA polymerase sigma factor insig. 42 77
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06665 RNA polymerase sigma factor insig. 42 77
  Ralstonia solanacearum UW163 UW163_RS06960 RNA polymerase sigma factor insig. 42 77
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 42 74
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 41 74
  Pseudomonas sp. SVBP6 COO64_RS11395 RNA polymerase sigma factor insig. 37 77
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 36 83
  Pseudomonas putida KT2440 PP_4208 RNA polymerase sigma-70 factor, ECF subfamily strong 38 83
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 35 83
  Pseudomonas sp. SVBP6 COO64_RS02925 RNA polymerase sigma factor insig. 31 92
  Pseudomonas sp. BP01 JOY50_RS15495 RNA polymerase sigma factor insig. 39 77
  Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma insig. 38 74
  Pseudomonas sp. SVBP6 COO64_RS18805 sigma-70 family RNA polymerase sigma factor insig. 35 83
  Pseudomonas aeruginosa PA14 IKLFDK_24795 RNA polymerase sigma factor insig. 40 81
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 40 79
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS17460 RNA polymerase sigma-70 factor insig. 31 77
  Pseudomonas simiae WCS417 PS417_17630 RNA polymerase sigma factor insig. 34 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 35 83
  Pseudomonas simiae WCS417 PS417_24420 RNA polymerase sigma70 no data 34 77
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 35 83
o Rhodopseudomonas palustris CGA009 TX73_012350 RNA polymerase sigma factor insig. 30 83
  Agrobacterium fabrum C58 Atu3692 sigma factor sig. 37 76
  Pseudomonas sp. DMC3 GFF759 putative RNA polymerase sigma factor FecI insig. 34 83
  Pseudomonas putida KT2440 PP_4608 RNA polymerase sigma-70 factor, ECF subfamily insig. 36 77
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04694 ECF RNA polymerase sigma factor SigE insig. 34 86
  Azospirillum brasilense Sp245 AZOBR_RS30810 RNA polymerase sigma70 insig. 37 75
  Pseudomonas fluorescens SBW25 PFLU_RS26350 RNA polymerase sigma factor insig. 34 74
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26350 RNA polymerase sigma factor sig. 34 74
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01230 putative RNA polymerase sigma factor FecI cofit 39 77
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3041 RNA polymerase sigma factor, sigma-70 family insig. 37 83
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 35 83
  Pseudomonas fluorescens SBW25 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor insig. 33 83
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19420 sigma-70 family RNA polymerase sigma factor strong 33 83
  Pseudomonas sp. SVBP6 COO64_RS12800 RNA polymerase sigma factor insig. 40 72
  Methylophilus sp. DMC18 GFF1837 hypothetical protein insig. 35 73
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 39 80
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 40 77
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 40 77
  Pseudomonas simiae WCS417 PS417_05120 RNA polymerase subunit sigma-24 insig. 39 77
  Pectobacterium carotovorum WPP14 HER17_RS14055 sigma-70 family RNA polymerase sigma factor insig. 33 73
  Pseudomonas simiae WCS417 PS417_16255 RNA polymerase sigma factor sig. 34 78
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0778 RNA polymerase sigma factor, sigma-70 family insig. 35 83
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 39 77
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11705 hypothetical protein insig. 31 85
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS00640 sigma-70 family RNA polymerase sigma factor cofit 31 96
  Pseudomonas fluorescens SBW25 PFLU_RS06940 sigma-70 family RNA polymerase sigma factor insig. 37 74
  Pseudomonas fluorescens SBW25-INTG PFLU_RS06940 sigma-70 family RNA polymerase sigma factor sig. 37 74
  Pseudomonas fluorescens SBW25 PFLU_RS28550 RNA polymerase sigma factor insig. 37 77
  Pseudomonas fluorescens SBW25-INTG PFLU_RS28550 RNA polymerase sigma factor insig. 37 77
  Dechlorosoma suillum PS Dsui_1673 RNA polymerase sigma factor, sigma-70 family no data 36 77
o Pseudomonas fluorescens FW300-N2E3 AO353_03435 RNA polymerase subunit sigma-24 insig. 35 83
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2440 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 35 91
  Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 39 77
  Pseudomonas aeruginosa PA14 IKLFDK_17505 RNA polymerase subunit sigma-70 insig. 37 77
  Pseudomonas fluorescens SBW25 PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 34 78
  Pseudomonas fluorescens SBW25-INTG PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 34 78
  Pseudomonas sp. DMC3 GFF5154 hypothetical protein insig. 33 83
  Methylophilus sp. DMC18 GFF1078 hypothetical protein insig. 31 85
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS09540 sigma-70 family RNA polymerase sigma factor no data 34 82
  Pseudomonas sp. DMC3 GFF1893 putative RNA polymerase sigma factor FecI insig. 40 77
  Methylophilus sp. DMC18 GFF1839 hypothetical protein insig. 34 85
  Pseudomonas sp. RS175 PFR28_02859 putative RNA polymerase sigma factor FecI insig. 36 79
  Pseudomonas fluorescens SBW25 PFLU_RS24340 sigma-70 family RNA polymerase sigma factor insig. 32 86
  Pseudomonas fluorescens SBW25-INTG PFLU_RS24340 sigma-70 family RNA polymerase sigma factor strong 32 86
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0584 RNA polymerase sigma factor, sigma-70 family insig. 42 43
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01536 hypothetical protein insig. 35 78
  Lysobacter sp. OAE881 ABIE51_RS06950 RNA polymerase sigma factor strong 31 92
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_118 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 36 79
  Caulobacter crescentus NA1000 CCNA_01032 RNA polymerase ECF-type sigma factor cofit 35 84
  Caulobacter crescentus NA1000 Δfur CCNA_01032 RNA polymerase ECF-type sigma factor cofit 35 84
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05630 RNA polymerase sigma-70 factor sig. 30 76
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 35 80
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 35 78
  Pseudomonas fluorescens FW300-N2C3 AO356_05230 RNA polymerase subunit sigma-24 insig. 34 82
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02400 RNA polymerase sigma factor cofit 30 76
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2727 FIG006045: Sigma factor, ECF subfamily insig. 34 73
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3549 RNA polymerase sigma factor, sigma-70 family insig. 31 80
  Pseudomonas fluorescens FW300-N2C3 AO356_21215 RNA polymerase subunit sigma-24 insig. 36 79
  Rhodopseudomonas palustris CGA009 TX73_016965 RNA polymerase sigma factor insig. 33 76
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_29 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 34 79
  Pseudomonas sp. DMC3 GFF1353 putative RNA polymerase sigma factor FecI cofit 34 80
  Pseudomonas syringae pv. syringae B728a Psyr_1107 Sigma-70 region 2 insig. 34 82
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1107 Sigma-70 region 2 insig. 34 82
  Pseudomonas simiae WCS417 PS417_22700 RNA polymerase subunit sigma-24 strong 32 86
  Pseudomonas aeruginosa PA14 IKLFDK_11700 pyoverdine signaling pathway sigma factor FpvI sig. 34 74
  Pseudomonas sp. BP01 JOY50_RS22705 RNA polymerase sigma factor insig. 33 80
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15920 sigma-70 family RNA polymerase sigma factor insig. 31 79
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS21465 RNA polymerase sigma factor insig. 36 72
  Ralstonia solanacearum UW163 UW163_RS17725 RNA polymerase sigma factor insig. 36 72
  Dechlorosoma suillum PS Dsui_0621 RNA polymerase sigma factor, sigma-70 family insig. 33 78
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12435 hypothetical protein insig. 29 88
  Herbaspirillum seropedicae SmR1 HSERO_RS22395 RNA polymerase sigma factor insig. 35 77
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS07030 RNA polymerase sigma-70 factor insig. 27 99
  Ralstonia solanacearum PSI07 RPSI07_RS01670 RNA polymerase sigma factor insig. 34 78
  Pseudomonas simiae WCS417 PS417_09740 RNA polymerase subunit sigma-24 insig. 33 79
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_604 FIG006045: Sigma factor, ECF subfamily insig. 33 83