| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Xanthobacter sp. DMC5 | GFF3363 | | HTH-type transcriptional regulator DmlR | insig. | 100 | 100 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21915 | | LysR family transcriptional regulator | strong | 32 | 96 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS15810 | | LysR family transcriptional regulator | insig. | 34 | 94 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS09305 | | LysR family transcriptional regulator | insig. | 32 | 96 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS08130 | | LysR family transcriptional regulator | insig. | 30 | 99 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS07880 | | LysR family transcriptional regulator | cofit | 30 | 99 |
| | Serratia liquefaciens MT49 | IAI46_12425 | | LysR family transcriptional regulator | sig. | 33 | 95 |
| | Shewanella sp. ANA-3 | Shewana3_3800 | | LysR family transcriptional regulator (RefSeq) | insig. | 31 | 98 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3857 | | Transcriptional regulator, LysR family | insig. | 34 | 86 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF461 | | Transcriptional regulator, LysR family | insig. | 31 | 99 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_14945 | lysR | LysR family transcriptional regulator | insig. | 30 | 99 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS12490 | | LysR family transcriptional regulator | insig. | 34 | 96 |
| | Pseudomonas sp. BP01 | JOY50_RS23715 | | LysR substrate-binding domain-containing protein | insig. | 35 | 96 |
| | Pseudomonas orientalis W4I3 | QF045_RS13895 | | LysR family transcriptional regulator | insig. | 35 | 85 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS12790 | | LysR family transcriptional regulator | insig. | 34 | 96 |
| | Pseudomonas sp. SVBP6 | COO64_RS19755 | | LysR substrate-binding domain-containing protein | insig. | 34 | 96 |
| | Shewanella oneidensis MR-1 | SO0369 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 29 | 97 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.4646.1 | | Transcriptional regulator, LysR family | insig. | 35 | 97 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS33760 | | hypothetical protein | insig. | 32 | 93 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS18050 | | LysR family transcriptional regulator | insig. | 34 | 85 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS18050 | | LysR family transcriptional regulator | insig. | 34 | 85 |
| | Pseudomonas putida KT2440 | PP_1615 | | Transcriptional regulator, LysR family | strong | 35 | 96 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06344 | | transcriptional regulator, LysR family | insig. | 32 | 99 |
| | Pseudomonas simiae WCS417 | PS417_16085 | | LysR family transcriptional regulator | insig. | 34 | 85 |
| | Pseudomonas sp. S08-1 | OH686_18145 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 34 | 97 |
| | Pseudomonas sp. RS175 | PFR28_00419 | | HTH-type transcriptional regulator DmlR | strong | 34 | 94 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3107 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 34 | 94 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS42300 | gfnR;inference=COORDINATES | glutathione-dependent formaldehyde neutralization regulator | insig. | 34 | 96 |
| | Rahnella sp. WP5 | EX31_RS16730 | | LysR family transcriptional regulator | insig. | 33 | 96 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS26820 | | LysR family transcriptional regulator | insig. | 31 | 84 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS15095 | | LysR family transcriptional regulator | insig. | 30 | 97 |
| | Pseudomonas stutzeri RCH2 | Psest_2817 | | Transcriptional regulator | insig. | 36 | 93 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 34 | 94 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 34 | 94 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS14825 | gfnR;inference=COORDINATES | glutathione-dependent formaldehyde neutralization regulator | insig. | 34 | 96 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02593 | | HTH-type transcriptional regulator DmlR | cofit | 33 | 85 |
| | Pseudomonas sp. BP01 | JOY50_RS26935 | | LysR substrate-binding domain-containing protein | insig. | 33 | 92 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 33 | 86 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 33 | 86 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_12635 | | putative HTH-type transcriptional regulator LtrA | insig. | 32 | 100 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS30230 | | LysR family transcriptional regulator | insig. | 32 | 97 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_18535 | | glutathione-dependent formaldehyde neutralization regulator | insig. | 34 | 96 |
| | Azospirillum brasilense Sp245 | AZOBR_RS27910 | | LysR family transcriptional regulator | insig. | 33 | 88 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS01520 | | LysR family transcriptional regulator | insig. | 33 | 98 |
| | Shewanella loihica PV-4 | Shew_0823 | | LysR family transcriptional regulator (RefSeq) | insig. | 32 | 99 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS02935 | | LysR family transcriptional regulator | insig. | 32 | 94 |
| | Paraburkholderia graminis OAS925 | ABIE53_005024 | | LysR family transcriptional activator of dmlA | insig. | 32 | 99 |
| | Dickeya dadantii 3937 | DDA3937_RS11930 | | LysR family transcriptional regulator | insig. | 34 | 97 |
| | Pseudomonas sp. RS175 | PFR28_02001 | | HTH-type transcriptional regulator DmlR | insig. | 33 | 97 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_29485 | | LysR family transcriptional regulator | insig. | 34 | 94 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22295 | | LysR family transcriptional regulator | insig. | 33 | 86 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS15410 | | LysR family transcriptional regulator | cofit | 31 | 99 |
| | Rhizobium sp. OAE497 | ABIE40_RS03550 | | LysR family transcriptional regulator | strong | 32 | 96 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3045 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | strong | 34 | 94 |
| | Serratia liquefaciens MT49 | IAI46_16195 | | LysR family transcriptional regulator | insig. | 32 | 95 |
| | Pseudomonas sp. DMC3 | GFF943 | | HTH-type transcriptional regulator DmlR | cofit | 32 | 86 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS14490 | | LysR family transcriptional regulator | insig. | 31 | 96 |
| | Pseudomonas segetis P6 | ACVTMO_RS17005 | | LysR substrate-binding domain-containing protein | insig. | 33 | 96 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS04415 | | LysR family transcriptional regulator | insig. | 31 | 93 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16575 | | LysR family transcriptional regulator | insig. | 34 | 94 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS06390 | | LysR family transcriptional regulator | insig. | 34 | 94 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS06390 | | LysR family transcriptional regulator | cofit | 34 | 94 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5905 | | Transcriptional regulator, LysR family | insig. | 33 | 86 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_21990 | | LysR family transcriptional regulator | insig. | 32 | 86 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS32010 | | LysR substrate-binding domain-containing protein | insig. | 31 | 99 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3594 | | Putative transcriptional regulator LYSR-type | insig. | 30 | 98 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_23240 | | LysR family transcriptional regulator | insig. | 33 | 86 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2393 | | Transcriptional regulator, LysR family | insig. | 33 | 96 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_259 | | Transcriptional regulator, LysR family | insig. | 33 | 86 |
| | Pseudomonas sp. SVBP6 | COO64_RS26735 | | LysR family transcriptional regulator | insig. | 32 | 96 |
| | Pseudomonas simiae WCS417 | PS417_14590 | | LysR family transcriptional regulator | insig. | 34 | 94 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4411 | | Transcriptional regulator, LysR family | no data | 32 | 97 |
| | Azospirillum brasilense Sp245 | AZOBR_RS18640 | | LysR family transcriptional regulator | insig. | 33 | 96 |
| | Pseudomonas sp. RS175 | PFR28_02643 | | HTH-type transcriptional regulator DmlR | insig. | 32 | 86 |
| | Pantoea sp. MT58 | IAI47_01190 | | LysR family transcriptional regulator | insig. | 31 | 96 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_05925 | | LysR family transcriptional regulator | strong | 34 | 94 |
| | Pseudomonas sp. DMC3 | GFF2076 | | HTH-type transcriptional regulator DmlR | insig. | 34 | 96 |
| | Paraburkholderia graminis OAS925 | ABIE53_005907 | | DNA-binding transcriptional LysR family regulator | insig. | 29 | 96 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4683 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 33 | 94 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_20020 | | transcriptional regulator | insig. | 31 | 97 |
| | Variovorax sp. SCN45 | GFF2217 | | Transcriptional regulator, LysR family | insig. | 35 | 84 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_25270 | | LysR family transcriptional regulator | insig. | 34 | 98 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01435 | | HTH-type transcriptional regulator DmlR | cofit | 33 | 94 |
| | Shewanella oneidensis MR-1 | SOA0165 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 29 | 97 |
| | Azospirillum sp. SherDot2 | MPMX19_04565 | | HTH-type transcriptional regulator PgrR | insig. | 34 | 97 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1749 | | Cyn operon transcriptional activator | insig. | 34 | 94 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS26545 | osaR;inference=COORDINATES | oxidative stress response transcriptional regulator OsaR | insig. | 34 | 98 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS31115 | osaR;inference=COORDINATES | oxidative stress response transcriptional regulator OsaR | insig. | 34 | 98 |
| | Agrobacterium fabrum C58 | Atu3951 | | LysR family transcriptional regulator | insig. | 33 | 87 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2357 | | transcriptional regulator, LysR family | insig. | 32 | 95 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2357 | | transcriptional regulator, LysR family | insig. | 32 | 95 |
| | Agrobacterium fabrum C58 | Atu0664 | | transcriptional regulator, LysR family | strong | 32 | 96 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_482 | | Transcriptional regulator, LysR family | insig. | 31 | 97 |
| | Pseudomonas simiae WCS417 | PS417_09420 | | LysR family transcriptional regulator | insig. | 31 | 98 |
| | Pseudomonas orientalis W4I3 | QF045_RS11850 | | LysR family transcriptional regulator | insig. | 30 | 97 |
| | Rhizobium sp. OAE497 | ABIE40_RS03475 | | LysR family transcriptional regulator | insig. | 30 | 95 |
| | Pseudomonas simiae WCS417 | PS417_08020 | | LysR family transcriptional regulator | insig. | 29 | 95 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_02840 | | LuxR family transcriptional regulator | insig. | 33 | 96 |
| | Pantoea sp. MT58 | IAI47_16730 | | LysR family transcriptional regulator | insig. | 32 | 85 |
| | Pseudomonas sp. BP01 | JOY50_RS02065 | | LysR family transcriptional regulator | insig. | 31 | 85 |