Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Pseudomonas fluorescens FW300-N2E3 | AO353_23035 | | D-alanyl-D-alanine dipeptidase | insig. | 100 | 100 |
| Pseudomonas fluorescens GW456-L13 | PfGW456L13_2683 | | D-alanyl-D-alanine dipeptidase (EC 3.4.13.22) | insig. | 78 | 50 |
| Pseudomonas fluorescens GW456-L13 | PfGW456L13_2682 | | Gll0911 protein | insig. | 68 | 49 |
| Rhodanobacter denitrificans FW104-10B01 | LRK54_RS11520 | | transpeptidase | insig. | 48 | 45 |
| Rhodanobacter sp. FW510-T8 | OKGIIK_12335 | | YkuD domain-containing protein | insig. | 47 | 45 |
| Rhodanobacter denitrificans MT42 | LRK55_RS11250 | | hypothetical protein | insig. | 46 | 45 |
| Lysobacter sp. OAE881 | ABIE51_RS13705 | | L,D-transpeptidase family protein | insig. | 47 | 45 |
| Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.4818.1 | | Gll0911 protein | insig. | 45 | 46 |
| Dyella japonica UNC79MFTsu3.2 | ABZR86_RS12095 | | L,D-transpeptidase | insig. | 44 | 47 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2590 | | D-alanyl-D-alanine dipeptidase (EC 3.4.13.22) | insig. | 40 | 47 |
| Rhodanobacter denitrificans MT42 | LRK55_RS11200 | | M15 family metallopeptidase | cofit | 45 | 47 |
| Rhodanobacter denitrificans FW104-10B01 | LRK54_RS11470 | | M15 family metallopeptidase | insig. | 44 | 47 |
| Rhodanobacter sp. FW510-T8 | OKGIIK_12390 | | D-alanyl-D-alanine dipeptidase | insig. | 44 | 49 |
| Lysobacter sp. OAE881 | ABIE51_RS13665 | | M15 family metallopeptidase | insig. | 42 | 48 |
| Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.4808.1 | | D-alanyl-D-alanine dipeptidase (EC 3.4.13.22) | insig. | 41 | 51 |
| Dyella japonica UNC79MFTsu3.2 | ABZR86_RS12145 | | M15 family metallopeptidase | insig. | 41 | 47 |
| Enterobacter asburiae PDN3 | EX28DRAFT_1117 | | D-alanyl-D-alanine dipeptidase | insig. | 31 | 48 |
| Caulobacter crescentus NA1000 | CCNA_02356 | | D-alanyl-D-alanine dipeptidase | insig. | 33 | 50 |
| Caulobacter crescentus NA1000 Δfur | CCNA_02356 | | D-alanyl-D-alanine dipeptidase | cofit | 33 | 50 |
| Escherichia coli ECRC99 | KEDOAH_27130 | ddpX | D-alanyl-D-alanine dipeptidase | no data | 32 | 43 |
| Enterobacter sp. TBS_079 | MPMX20_02355 | | D-alanyl-D-alanine dipeptidase | insig. | 32 | 45 |
| Escherichia coli BL21 | ECD_01446 | | D-ala-D-ala dipeptidase, Zn-dependent | no data | 32 | 43 |
| Escherichia coli ECOR27 | NOLOHH_18955 | ddpX | D-alanyl-D-alanine dipeptidase | insig. | 32 | 43 |
| Escherichia coli ECRC100 | OKFHMN_01315 | ddpX | D-alanyl-D-alanine dipeptidase | cofit | 32 | 43 |
| Escherichia coli ECRC101 | MCAODC_16625 | ddpX | D-alanyl-D-alanine dipeptidase | insig. | 32 | 43 |
| Escherichia coli ECRC102 | NIAGMN_25445 | ddpX | D-alanyl-D-alanine dipeptidase | insig. | 32 | 43 |
| Escherichia coli ECRC62 | BNILDI_17440 | ddpX | D-alanyl-D-alanine dipeptidase | cofit | 32 | 43 |
| Escherichia coli ECRC98 | JDDGAC_03805 | ddpX | D-alanyl-D-alanine dipeptidase | cofit | 32 | 43 |
| Escherichia coli BW25113 | b1488 | ddpX | D-ala-D-ala dipeptidase, Zn-dependent (NCBI) | sig. | 32 | 43 |
| Pantoea sp. MT58 | IAI47_14195 | | D-alanyl-D-alanine dipeptidase | insig. | 33 | 40 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02229 | | D-alanyl-D-alanine dipeptidase | insig. | 31 | 43 |
| Serratia liquefaciens MT49 | IAI46_12020 | | D-alanyl-D-alanine dipeptidase | no data | 29 | 45 |
| Escherichia coli ECOR38 | HEPCGN_26480 | ddpX | D-alanyl-D-alanine dipeptidase | insig. | 31 | 43 |
| Mycobacterium tuberculosis H37Rv | Rv0838 | | Probable conserved lipoprotein LpqR | insig. | 32 | 48 |
| Rahnella sp. WP5 | EX31_RS10245 | | D-alanyl-D-alanine dipeptidase | insig. | 31 | 43 |
| Azospirillum sp. SherDot2 | MPMX19_02602 | | D-alanyl-D-alanine dipeptidase | insig. | 31 | 41 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS21520 | | D-alanyl-D-alanine dipeptidase | insig. | 26 | 49 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06099 | | D-alanyl-D-alanine dipeptidase | insig. | 28 | 43 |
| Sphingomonas koreensis DSMZ 15582 | Ga0059261_1656 | | D-alanyl-D-alanine dipeptidase | insig. | 31 | 45 |
| Magnetospirillum magneticum AMB-1 | AMB_RS22545 | | D-alanyl-D-alanine dipeptidase | insig. | 30 | 43 |
| Burkholderia phytofirmans PsJN | BPHYT_RS31225 | | D-alanyl-D-alanine dipeptidase | sig. | 27 | 46 |
| Paraburkholderia graminis OAS925 | ABIE53_004341 | | D-alanyl-D-alanine dipeptidase | insig. | 28 | 43 |
| Rhodospirillum rubrum S1H | Rru_A3762 | | Peptidase M15D, vanX D-ala-D-ala dipeptidase (NCBI) | insig. | 33 | 41 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS15570 | | D-alanyl-D-alanine dipeptidase | strong | 28 | 43 |
| Castellaniella sp019104865 MT123 | ABCV34_RS11115 | | D-alanyl-D-alanine dipeptidase | insig. | 28 | 49 |
| Rhodospirillum rubrum S1H | Rru_A3635 | | hypothetical protein (NCBI) | sig. | 37 | 27 |
| Rhodopseudomonas palustris CGA009 | TX73_001480 | | L,D-transpeptidase family protein | insig. | 30 | 38 |
| Agrobacterium fabrum C58 | Atu2764 | | hypothetical protein | insig. | 34 | 26 |
| Bosea sp. OAE506 | ABIE41_RS04725 | | L,D-transpeptidase family protein | sig. | 31 | 30 |
| Azospirillum brasilense Sp245 | AZOBR_RS01510 | | D-alanyl-D-alanine dipeptidase | insig. | 29 | 41 |
| Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS11995 | | M15 family metallopeptidase | insig. | 25 | 51 |
| Azospirillum sp. SherDot2 | MPMX19_00049 | | hypothetical protein | insig. | 32 | 32 |
| Dinoroseobacter shibae DFL-12 | Dshi_0041 | | hypothetical protein (RefSeq) | insig. | 36 | 27 |
| Phocaeicola dorei CL03T12C01 | ABI39_RS04825 | | M15 family metallopeptidase | insig. | 25 | 51 |
| Rhizobium sp. OAE497 | ABIE40_RS18390 | | L,D-transpeptidase family protein | insig. | 32 | 26 |
| Azospirillum brasilense Sp245 | AZOBR_RS01875 | | hypothetical protein | sig. | 35 | 24 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1819 | | D-alanyl-D-alanine dipeptidase | insig. | 28 | 43 |
| Phaeobacter inhibens DSM 17395 | PGA1_c33350 | | L,D-transpeptidase catalytic domain. | insig. | 32 | 32 |
| Caulobacter crescentus NA1000 | CCNA_03860 | | hypothetical protein | strong | 31 | 27 |
| Caulobacter crescentus NA1000 Δfur | CCNA_03860 | | hypothetical protein | cofit | 31 | 27 |
| Mycobacterium tuberculosis H37Rv | Rv0309 | | Possible conserved exported protein | sig. | 23 | 35 |
| Sinorhizobium meliloti 1021 | SMc03821 | | hypothetical protein | insig. | 32 | 26 |
| Paraburkholderia graminis OAS925 | ABIE53_005761 | | D-alanyl-D-alanine dipeptidase | insig. | 30 | 21 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS34880 | | M15 family metallopeptidase | insig. | 37 | 11 |