Homologs of Shew_2065 from Shewanella loihica PV-4

diguanylate cyclase/phosphodiesterase (RefSeq)
SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella loihica PV-4 Shew_2065 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 100 100
o Shewanella sp. ANA-3 Shewana3_2167 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 55 93
o Shewanella oneidensis MR-1 SO2507 GGDEF domain protein (NCBI ptt file) insig. 52 99
o Shewanella amazonensis SB2B Sama_1829 putative diguanylate phosphodiesterase (RefSeq) insig. 52 90
  Alteromonas macleodii MIT1002 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr insig. 26 76
  Alteromonas macleodii MIT1002 MIT1002_01559 Cyclic di-GMP phosphodiesterase YfgF insig. 25 76
  Pseudomonas sp. SVBP6 COO64_RS26435 lapD cyclic di-GMP receptor LapD cofit 25 77
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD strong 25 77
  Pseudomonas fluorescens FW300-N2C3 AO356_10580 hypothetical protein cofit 25 77
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00514 RNase E specificity factor CsrD cofit 25 77
  Pseudomonas sp. RS175 PFR28_04783 hypothetical protein strong 25 77
  Pseudomonas fluorescens FW300-N2E3 AO353_11170 hypothetical protein strong 26 77
  Pseudomonas sp. DMC3 GFF4286 hypothetical protein cofit 25 77
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD insig. 25 77
  Pseudomonas orientalis W4I3 QF045_RS03595 EAL domain-containing protein cofit 24 73
  Pseudomonas fluorescens GW456-L13 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD insig. 25 77
  Pseudomonas sp. S08-1 OH686_21075 Sensory box/GGDEF family protein insig. 29 69
  Marinobacter adhaerens HP15 HP15_3218 diguanylate cyclase/phosphodiesterase insig. 27 70
  Pectobacterium carotovorum WPP14 HER17_RS05880 EAL domain-containing protein cofit 24 77
  Bosea sp. OAE506 ABIE41_RS19250 EAL domain-containing protein insig. 26 67
  Acidovorax sp. GW101-3H11 Ac3H11_903 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 25 67
  Pseudomonas segetis P6 ACVTMO_RS14575 lapD cyclic di-GMP receptor LapD insig. 24 77
  Rhodanobacter denitrificans MT42 LRK55_RS09660 EAL domain-containing protein insig. 27 65
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS10020 EAL domain-containing protein insig. 27 65
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS02790 EAL domain-containing protein insig. 27 65
  Pseudomonas sp. BP01 JOY50_RS28180 lapD cyclic di-GMP receptor LapD no data 25 69
  Shewanella loihica PV-4 Shew_3125 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 26 63
  Dechlorosoma suillum PS Dsui_0760 diguanylate cyclase (GGDEF) domain-containing protein cofit 26 67
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1842.1 Mlr3171 protein insig. 25 67
  Pseudomonas putida KT2440 PP_0165 GGDEF domain protein strong 25 77
  Pseudomonas sp. S08-1 OH686_20650 Membrane bound c-di-GMP receptor LapD insig. 22 77
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3529 Membrane bound c-di-GMP receptor LapD insig. 24 77
  Pseudomonas fluorescens FW300-N2E3 AO353_18415 hypothetical protein insig. 25 74
  Pseudomonas aeruginosa PUPa3 DQ20_RS44635 EAL domain-containing protein insig. 26 67
  Pseudomonas sp. SVBP6 COO64_RS06790 EAL domain-containing protein cofit 25 68
  Pseudomonas aeruginosa MRSN321 DY961_RS08185 EAL domain-containing protein sig. 25 67
  Shewanella amazonensis SB2B Sama_0449 regulatory protein CsrD (RefSeq) sig. 24 98
  Acidovorax sp. GW101-3H11 Ac3H11_4120 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 26 68
  Pseudomonas sp. BP01 JOY50_RS16180 EAL domain-containing protein insig. 26 68
  Pseudomonas aeruginosa PA14 IKLFDK_03805 PAS domain S-box protein insig. 26 67
  Shewanella amazonensis SB2B Sama_2973 GGDEF domain-containing protein (RefSeq) insig. 24 65
  Pseudomonas sp. S08-1 OH686_11905 hypothetical protein insig. 24 67
  Shewanella sp. ANA-3 Shewana3_3668 regulatory protein CsrD (RefSeq) sig. 24 97
  Marinobacter adhaerens HP15 HP15_862 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain insig. 26 64
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04056 hypothetical protein cofit 25 69
  Pseudomonas sp. DMC3 GFF4687 hypothetical protein cofit 25 69
  Pseudomonas putida KT2440 PP_1761 diguanylate cyclase with phosphodiesterase domain strong 25 68
  Shewanella oneidensis MR-1 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) strong 23 97
  Rhodanobacter sp. FW510-T8 OKGIIK_16275 Diguanylate cyclase insig. 27 64
  Pseudomonas orientalis W4I3 QF045_RS21100 EAL domain-containing protein cofit 25 68
  Pseudomonas fluorescens SBW25 PFLU_RS21140 EAL domain-containing protein cofit 24 68
  Pseudomonas fluorescens SBW25-INTG PFLU_RS21140 EAL domain-containing protein strong 24 68
  Pseudomonas simiae WCS417 PS417_19145 membrane protein strong 24 68
  Pseudomonas fluorescens FW300-N2C3 AO356_03515 hypothetical protein cofit 24 69
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2166 Sensory box/GGDEF family protein insig. 24 67
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2530 Sensory box/GGDEF family protein strong 25 69
  Pseudomonas aeruginosa MRSN321 DY961_RS06515 diguanylate cyclase sig. 28 65
  Pseudomonas aeruginosa PA14 IKLFDK_05475 diguanylate cyclase insig. 28 65
  Pseudomonas aeruginosa PUPa3 DQ20_RS46285 diguanylate cyclase cofit 28 65
  Klebsiella pneumoniae MKP103 KDGMDA_06280 Lipoprotein strong 25 66
  Vibrio cholerae E7946 ATCC 55056 CSW01_00390 GGDEF domain-containing protein insig. 25 65
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_361 Sensory box/GGDEF family protein insig. 24 68
  Acidovorax sp. GW101-3H11 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD insig. 23 76
  Pseudomonas syringae pv. syringae B728a Psyr_3655 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) cofit 24 67
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3655 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 24 67
  Pseudomonas sp. RS175 PFR28_00896 hypothetical protein insig. 24 69
  Cupriavidus basilensis FW507-4G11 RR42_RS03995 diguanylate cyclase insig. 27 57
  Shewanella sp. ANA-3 Shewana3_0620 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 23 74
  Shewanella amazonensis SB2B Sama_0388 putative diguanylate phosphodiesterase (RefSeq) strong 25 64
  Dechlorosoma suillum PS Dsui_2894 diguanylate cyclase (GGDEF) domain-containing protein cofit 24 76
  Escherichia coli Nissle 1917 ECOLIN_RS18635 RNase E specificity factor CsrD cofit 24 66
  Rhodospirillum rubrum S1H Rru_A2763 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) insig. 26 65
  Escherichia fergusonii Becca EFB2_00579 RNase E specificity factor CsrD insig. 24 66
  Escherichia coli ECOR38 HEPCGN_16585 csrD RNase E specificity factor CsrD cofit 24 66
  Pseudomonas fluorescens FW300-N2C3 AO356_14260 diguanylate cyclase insig. 26 70
  Pseudomonas fluorescens FW300-N2E3 AO353_02120 hypothetical protein strong 24 69
  Shewanella oneidensis MR-1 SO0437 sensory box protein (NCBI ptt file) strong 27 65
  Vibrio cholerae E7946 ATCC 55056 CSW01_19490 GGDEF domain-containing protein cofit 22 77
  Klebsiella michiganensis M5al BWI76_RS25505 RNase E specificity factor CsrD strong 25 63
  Shewanella oneidensis MR-1 SO0628 GGDEF domain protein (NCBI ptt file) insig. 23 65
  Shewanella sp. ANA-3 Shewana3_0436 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) strong 27 65
  Escherichia coli BL21 ECD_03111 targeting factor for csrBC sRNA degradation cofit 24 66
  Escherichia coli ECOR27 NOLOHH_09505 csrD RNase E specificity factor CsrD cofit 24 66
  Escherichia coli ECRC100 OKFHMN_17720 csrD RNase E specificity factor CsrD cofit 24 66
  Escherichia coli ECRC101 MCAODC_08240 csrD RNase E specificity factor CsrD cofit 24 66
  Escherichia coli ECRC102 NIAGMN_15480 csrD RNase E specificity factor CsrD cofit 24 66
  Escherichia coli ECRC98 JDDGAC_21345 csrD RNase E specificity factor CsrD cofit 24 66
  Escherichia coli ECRC99 KEDOAH_10430 csrD RNase E specificity factor CsrD no data 24 66
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00453 RNase E specificity factor CsrD cofit 24 66
  Escherichia coli BW25113 b3252 yhdA conserved inner membrane protein (NCBI) sig. 24 66
  Magnetospirillum magneticum AMB-1 AMB_RS03740 signal transduction protein insig. 25 67
  Escherichia coli ECRC62 BNILDI_02015 csrD RNase E specificity factor CsrD cofit 24 66
  Kangiella aquimarina DSM 16071 B158DRAFT_2394 diguanylate cyclase (GGDEF) domain strong 25 68
  Alteromonas macleodii MIT1002 MIT1002_00145 Cyclic di-GMP phosphodiesterase Gmr cofit 26 57
  Rahnella sp. WP5 EX31_RS22670 sensor domain-containing phosphodiesterase insig. 29 42
  Serratia liquefaciens MT49 IAI46_22725 RNase E specificity factor CsrD cofit 23 65
  Methylophilus sp. DMC18 GFF887 hypothetical protein cofit 22 76
  Marinobacter adhaerens HP15 HP15_68 sensory box/FOG: EAL domain/GGDEF domain containing protein insig. 24 66
  Acidovorax sp. GW101-3H11 Ac3H11_2210 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 26 65
  Pseudomonas simiae WCS417 PS417_25885 diguanylate cyclase insig. 24 70