Conservation of cofitness between RR42_RS01405 and RR42_RS01185 in Cupriavidus basilensis FW507-4G11

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS01405 lytic transglycosylase 1.0 RR42_RS01185 muropeptide transporter 0.36 19
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS04885 lytic transglycosylase domain-containing protein 0.81 ABZR87_RS05635 muropeptide transporter 0.37 76
Ralstonia solanacearum GMI1000 0.70 RS_RS00445 lytic transglycosylase 0.81 RS_RS00760 MFS transporter 0.56 4
Ralstonia solanacearum UW163 0.70 UW163_RS03720 lytic transglycosylase 0.80 UW163_RS03435 MFS transporter — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS09860 lytic transglycosylase 0.80 RALBFv3_RS10145 MFS transporter 0.89 19
Ralstonia solanacearum PSI07 0.69 RPSI07_RS23510 lytic transglycosylase 0.80 RPSI07_RS23200 MFS transporter low > 81
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS28635 lytic transglycosylase domain-containing protein 0.34 QEN71_RS00280 AmpG family muropeptide MFS transporter low > 153
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS18610 lytic transglycosylase 0.32 BPHYT_RS01585 major facilitator superfamily protein low > 109
Paraburkholderia graminis OAS925 0.50 ABIE53_000044 soluble lytic murein transglycosylase 0.33 ABIE53_000412 PAT family beta-lactamase induction signal transducer AmpG low > 113
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_05816 soluble lytic murein transglycosylase 0.33 H281DRAFT_02216 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG 0.36 85
Dechlorosoma suillum PS 0.35 Dsui_0683 soluble lytic murein transglycosylase-like protein 0.43 Dsui_0739 Major Facilitator Superfamily transporter low > 51
Variovorax sp. SCN45 0.33 GFF5163 Soluble lytic murein transglycosylase (EC 4.2.2.n1) 0.26 GFF5071 AmpG permease low > 127
Variovorax sp. OAS795 0.33 ABID97_RS06595 transglycosylase SLT domain-containing protein 0.26 ABID97_RS03830 AmpG family muropeptide MFS transporter low > 91
Acidovorax sp. GW101-3H11 0.32 Ac3H11_1834 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.27 Ac3H11_3358 AmpG permease low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1614 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.25 GFF1869 AmpG permease low > 90
Castellaniella sp019104865 MT123 0.28 ABCV34_RS13560 transglycosylase SLT domain-containing protein 0.62 ABCV34_RS10915 muropeptide transporter low > 48
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS12745 transglycosylase SLT domain-containing protein 0.25 ABZR86_RS15655 MFS transporter 0.31 40
Rhodanobacter denitrificans MT42 0.14 LRK55_RS06980 transglycosylase SLT domain-containing protein 0.26 LRK55_RS08730 MFS transporter low > 63
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS07245 transglycosylase SLT domain-containing protein 0.26 LRK54_RS09200 MFS transporter low > 59
Shewanella sp. ANA-3 0.13 Shewana3_2236 lytic transglycosylase, catalytic (RefSeq) 0.29 Shewana3_0783 major facilitator transporter (RefSeq) low > 73
Pantoea sp. MT58 0.13 IAI47_16260 murein transglycosylase 0.66 IAI47_14675 muropeptide MFS transporter AmpG low > 76
Lysobacter sp. OAE881 0.13 ABIE51_RS19070 transglycosylase SLT domain-containing protein 0.25 ABIE51_RS00050 MFS transporter 0.75 8
Shewanella oneidensis MR-1 0.13 SO2040 soluble lytic murein transglycosylase, putative (NCBI ptt file) 0.29 SO3814 ampG protein, putative (NCBI ptt file) low > 76
Xanthomonas campestris pv. campestris strain 8004 0.12 Xcc-8004.961.1 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.24 Xcc-8004.4880.1 AmpG permease low > 74
Dickeya dadantii 3937 0.12 DDA3937_RS18455 murein transglycosylase 0.65 DDA3937_RS05620 muropeptide MFS transporter AmpG low > 74
Dickeya dianthicola 67-19 0.12 HGI48_RS18385 murein transglycosylase 0.65 HGI48_RS05665 muropeptide MFS transporter AmpG low > 71
Rahnella sp. WP5 0.12 EX31_RS03985 murein transglycosylase 0.69 EX31_RS22225 muropeptide MFS transporter AmpG low > 89
Enterobacter sp. TBS_079 0.12 MPMX20_00699 Soluble lytic murein transglycosylase 0.67 MPMX20_01024 Anhydromuropeptide permease low > 85
Enterobacter asburiae PDN3 0.12 EX28DRAFT_3602 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.67 EX28DRAFT_2538 AmpG-like permease low > 76
Dickeya dianthicola ME23 0.12 DZA65_RS19525 murein transglycosylase 0.65 DZA65_RS05990 muropeptide MFS transporter AmpG low > 75
Klebsiella michiganensis M5al 0.12 BWI76_RS04185 murein transglycosylase 0.67 BWI76_RS06500 muropeptide transporter AmpG 0.43 2
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.12 GFF1060 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.65 GFF4348 AmpG permease low > 78
Escherichia coli ECRC99 0.12 KEDOAH_16985 sltY murein transglycosylase 0.67 KEDOAH_19610 ampG muropeptide MFS transporter AmpG — —
Escherichia coli ECRC101 0.12 MCAODC_01685 sltY murein transglycosylase 0.67 MCAODC_27580 ampG muropeptide MFS transporter AmpG low > 87
Escherichia coli ECRC62 0.12 BNILDI_08095 sltY murein transglycosylase 0.67 BNILDI_22705 ampG muropeptide MFS transporter AmpG low > 75
Escherichia coli Nissle 1917 0.12 ECOLIN_RS25210 murein transglycosylase 0.67 ECOLIN_RS02600 muropeptide MFS transporter AmpG low > 55
Escherichia coli ECOR38 0.12 HEPCGN_09175 sltY murein transglycosylase 0.67 HEPCGN_06970 ampG muropeptide MFS transporter AmpG 0.70 30
Escherichia coli ECRC98 0.12 JDDGAC_14765 sltY murein transglycosylase 0.67 JDDGAC_12010 ampG muropeptide MFS transporter AmpG low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.12 OHPLBJKB_03669 Soluble lytic murein transglycosylase 0.67 OHPLBJKB_03240 Protein AmpG low > 73
Escherichia coli ECRC100 0.12 OKFHMN_11170 sltY murein transglycosylase 0.67 OKFHMN_08355 ampG muropeptide MFS transporter AmpG low > 80
Escherichia coli ECOR27 0.12 NOLOHH_03500 sltY murein transglycosylase 0.67 NOLOHH_01290 ampG muropeptide MFS transporter AmpG low > 75
Escherichia coli ECRC102 0.12 NIAGMN_09020 sltY murein transglycosylase 0.67 NIAGMN_06410 ampG muropeptide MFS transporter AmpG — —
Escherichia coli BW25113 0.12 b4392 slt soluble lytic murein transglycosylase (VIMSS) 0.67 b0433 ampG muropeptide transporter (NCBI) 0.77 1
Escherichia fergusonii Becca 0.12 EFB2_04052 Soluble lytic murein transglycosylase 0.67 EFB2_03624 Anhydromuropeptide permease 0.47 79
Escherichia coli BL21 0.11 ECD_04268 lytic murein transglycosylase, soluble 0.67 ECD_00384 muropeptide transporter 0.70 5
Vibrio cholerae E7946 ATCC 55056 0.11 CSW01_03655 murein transglycosylase 0.23 CSW01_11705 MFS transporter low > 62
Pectobacterium carotovorum WPP14 0.11 HER17_RS02750 murein transglycosylase 0.67 HER17_RS15870 muropeptide MFS transporter AmpG low > 75
Serratia liquefaciens MT49 0.11 IAI46_02985 murein transglycosylase 0.71 IAI46_04990 muropeptide MFS transporter AmpG low > 86
Erwinia tracheiphila SCR3 0.11 LU632_RS02575 sltY murein transglycosylase 0.59 LU632_RS18370 ampG muropeptide MFS transporter AmpG low > 74
Shewanella amazonensis SB2B 0.10 Sama_1895 soluble lytic murein transglycosylase, putative (RefSeq) 0.29 Sama_2556 AmpG protein, putative (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.10 MIT1002_00576 Soluble lytic murein transglycosylase precursor 0.28 MIT1002_00655 muropeptide transporter low > 70

Not shown: 17 genomes with orthologs for RR42_RS01405 only; 16 genomes with orthologs for RR42_RS01185 only