Conservation of cofitness between QEN71_RS28940 and QEN71_RS28880 in Paraburkholderia sabiae LMG 24235

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS28940 RNA polymerase sigma factor FliA 1.0 QEN71_RS28880 flagellar assembly peptidoglycan hydrolase FlgJ 0.95 3
Paraburkholderia graminis OAS925 0.97 ABIE53_000108 RNA polymerase sigma factor for flagellar operon FliA 0.76 ABIE53_000093 flagellar protein FlgJ 0.95 24
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_05756 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG 0.76 H281DRAFT_05770 flagellar protein FlgJ 0.73 8
Burkholderia phytofirmans PsJN 0.96 BPHYT_RS18925 RNA polymerase sigma70 0.77 BPHYT_RS18855 flagellar rod assembly protein FlgJ 0.85 19
Ralstonia solanacearum UW163 0.62 UW163_RS21665 RNA polymerase sigma factor FliA 0.42 UW163_RS17485 flagellar assembly peptidoglycan hydrolase FlgJ — —
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS17485 RNA polymerase sigma factor FliA 0.42 RALBFv3_RS21700 flagellar assembly peptidoglycan hydrolase FlgJ low > 76
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS18040 RNA polymerase sigma factor FliA 0.44 ABZR87_RS22250 flagellar assembly peptidoglycan hydrolase FlgJ 0.94 14
Ralstonia solanacearum GMI1000 0.62 RS_RS23830 RNA polymerase sigma factor FliA 0.41 RS_RS18835 flagellar assembly peptidoglycan hydrolase FlgJ low > 80
Ralstonia solanacearum PSI07 0.61 RPSI07_RS06165 RNA polymerase sigma factor FliA 0.43 RPSI07_RS01430 flagellar assembly peptidoglycan hydrolase FlgJ low > 81
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS35750 DNA-directed RNA polymerase sigma-70 factor 0.45 RR42_RS35685 flagellar rod assembly protein FlgJ low > 128
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS10160 flagellar biosynthesis sigma factor 0.44 HSERO_RS10220 flagellar rod assembly protein FlgJ — —
Variovorax sp. SCN45 0.59 GFF5774 RNA polymerase sigma factor for flagellar operon 0.38 GFF5723 Flagellar protein FlgJ [peptidoglycan hydrolase] low > 127
Dechlorosoma suillum PS 0.56 Dsui_1726 RNA polymerase sigma factor, FliA/WhiG family 0.34 Dsui_1740 flagellar rod assembly protein/muramidase FlgJ low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.54 GFF1428 RNA polymerase sigma factor for flagellar operon 0.33 GFF1407 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) low > 90
Acidovorax sp. GW101-3H11 0.53 Ac3H11_1381 RNA polymerase sigma factor for flagellar operon 0.31 Ac3H11_1367 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) low > 79
Erwinia tracheiphila SCR3 0.52 LU632_RS13785 RNA polymerase sigma factor FliA 0.35 LU632_RS10435 flgJ flagellar assembly peptidoglycan hydrolase FlgJ low > 74
Pantoea sp. MT58 0.51 IAI47_08160 RNA polymerase sigma factor FliA 0.36 IAI47_12125 flagellar assembly peptidoglycan hydrolase FlgJ 0.85 13
Escherichia fergusonii Becca 0.50 EFB2_02023 RNA polymerase sigma factor FliA 0.36 EFB2_02893 Peptidoglycan hydrolase FlgJ low > 86
Escherichia coli ECRC101 0.50 MCAODC_19610 fliA RNA polymerase sigma factor FliA 0.36 MCAODC_22995 flgJ flagellar assembly peptidoglycan hydrolase FlgJ low > 87
Escherichia coli ECRC62 0.50 BNILDI_15190 fliA RNA polymerase sigma factor FliA 0.36 BNILDI_19325 flgJ flagellar assembly peptidoglycan hydrolase FlgJ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_01807 RNA polymerase sigma factor FliA 0.36 OHPLBJKB_02584 Peptidoglycan hydrolase FlgJ low > 73
Escherichia coli ECRC102 0.50 NIAGMN_02270 fliA RNA polymerase sigma factor FliA 0.36 NIAGMN_24195 flgJ flagellar assembly peptidoglycan hydrolase FlgJ — —
Escherichia coli BW25113 0.50 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) 0.36 b1081 flgJ flagellar biosynthesis protein FlgJ (NCBI) 0.47 9
Escherichia coli ECOR27 0.50 NOLOHH_16400 fliA RNA polymerase sigma factor FliA 0.36 NOLOHH_21165 flgJ flagellar assembly peptidoglycan hydrolase FlgJ low > 75
Escherichia coli ECRC100 0.50 OKFHMN_25780 fliA RNA polymerase sigma factor FliA 0.36 OKFHMN_03635 flgJ flagellar assembly peptidoglycan hydrolase FlgJ 0.70 54
Escherichia coli ECRC98 0.50 JDDGAC_00370 fliA RNA polymerase sigma factor FliA 0.36 JDDGAC_07295 flgJ flagellar assembly peptidoglycan hydrolase FlgJ low > 86
Escherichia coli Nissle 1917 0.50 ECOLIN_RS10975 RNA polymerase sigma factor FliA 0.36 ECOLIN_RS06255 flagellar assembly peptidoglycan hydrolase FlgJ low > 55
Escherichia coli ECRC99 0.50 KEDOAH_02310 fliA RNA polymerase sigma factor FliA 0.36 KEDOAH_24120 flgJ flagellar assembly peptidoglycan hydrolase FlgJ — —
Serratia liquefaciens MT49 0.50 IAI46_15785 RNA polymerase sigma factor FliA 0.36 IAI46_15920 flagellar assembly peptidoglycan hydrolase FlgJ low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF1690 RNA polymerase sigma factor for flagellar operon 0.36 GFF3362 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) low > 78
Rahnella sp. WP5 0.50 EX31_RS09450 RNA polymerase sigma factor FliA 0.34 EX31_RS11275 flagellar assembly peptidoglycan hydrolase FlgJ 0.60 37
Enterobacter sp. TBS_079 0.49 MPMX20_02847 RNA polymerase sigma factor FliA 0.33 MPMX20_01760 Peptidoglycan hydrolase FlgJ 0.88 11
Enterobacter asburiae PDN3 0.49 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family 0.33 EX28DRAFT_1851 flagellar rod assembly protein/muramidase FlgJ 0.68 24
Dickeya dianthicola 67-19 0.49 HGI48_RS13350 RNA polymerase sigma factor FliA 0.35 HGI48_RS13485 flagellar assembly peptidoglycan hydrolase FlgJ 0.84 9
Dickeya dianthicola ME23 0.49 DZA65_RS13835 RNA polymerase sigma factor FliA 0.35 DZA65_RS13970 flagellar assembly peptidoglycan hydrolase FlgJ 0.98 11
Dickeya dadantii 3937 0.49 DDA3937_RS13300 RNA polymerase sigma factor FliA 0.35 DDA3937_RS13440 flagellar assembly peptidoglycan hydrolase FlgJ 0.98 4
Lysobacter sp. OAE881 0.48 ABIE51_RS16865 RNA polymerase sigma factor FliA 0.26 ABIE51_RS16710 flagellar assembly peptidoglycan hydrolase FlgJ 0.93 7
Marinobacter adhaerens HP15 0.46 HP15_2302 flagellar biosynthesis sigma factor FliA 0.28 HP15_1475 flagellar rod assembly protein/muramidase FlgJ 0.82 29
Shewanella sp. ANA-3 0.46 Shewana3_1359 fliA flagellar biosynthesis sigma factor (RefSeq) 0.17 Shewana3_1329 flgJ flagellar rod assembly protein/muramidase FlgJ (RefSeq) 0.86 27
Pectobacterium carotovorum WPP14 0.45 HER17_RS08355 RNA polymerase sigma factor FliA 0.35 HER17_RS08205 flagellar assembly peptidoglycan hydrolase FlgJ 0.95 4
Shewanella oneidensis MR-1 0.45 SO3210 fliA RNA polymerase sigma-27 factor (NCBI ptt file) 0.24 SO3241 flgJ flagellar protein FlgJ (NCBI ptt file) 0.87 10
Shewanella loihica PV-4 0.45 Shew_1383 fliA flagellar biosynthesis sigma factor (RefSeq) 0.28 Shew_1353 flgJ peptidoglycan hydrolase (RefSeq) 0.87 47
Castellaniella sp019104865 MT123 0.45 ABCV34_RS05605 RNA polymerase sigma factor FliA 0.33 ABCV34_RS05730 flagellar assembly peptidoglycan hydrolase FlgJ 0.66 26
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02830 fliA RNA polymerase sigma factor FliA 0.26 OKGIIK_02690 flgJ flagellar assembly peptidoglycan hydrolase FlgJ low > 52
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS20265 RNA polymerase sigma factor FliA 0.29 ABZR86_RS20115 flagellar assembly peptidoglycan hydrolase FlgJ low > 74
Alteromonas macleodii MIT1002 0.43 MIT1002_01103 Sigma-F factor 0.29 MIT1002_01049 Peptidoglycan hydrolase FlgJ low > 70
Rhodanobacter denitrificans MT42 0.43 LRK55_RS13320 RNA polymerase sigma factor FliA 0.22 LRK55_RS13185 flagellar assembly peptidoglycan hydrolase FlgJ low > 63
Rhodanobacter denitrificans FW104-10B01 0.43 LRK54_RS13580 RNA polymerase sigma factor FliA 0.25 LRK54_RS13445 flagellar assembly peptidoglycan hydrolase FlgJ 0.29 55
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_10335 RNA polymerase sigma factor FliA 0.26 CSW01_11185 flagellar assembly peptidoglycan hydrolase FlgJ 0.82 43

Not shown: 20 genomes with orthologs for QEN71_RS28940 only; 1 genomes with orthologs for QEN71_RS28880 only