Conservation of cofitness between Psyr_0025 and Psyr_4018 in Pseudomonas syringae pv. syringae B728a

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0025 shikimate dehydrogenase 1.0 Psyr_4018 Formyltetrahydrofolate deformylase 0.75 1
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0025 shikimate dehydrogenase 1.00 Psyr_4018 Formyltetrahydrofolate deformylase low > 86
Pseudomonas simiae WCS417 0.83 PS417_00125 shikimate dehydrogenase 0.91 PS417_22565 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.92 Pf1N1B4_665 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.91 PfGW456L13_1825 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_10670 shikimate dehydrogenase 0.92 AO353_03710 formyltetrahydrofolate deformylase low > 101
Pseudomonas sp. DMC3 0.81 GFF600 Shikimate dehydrogenase (NADP(+)) 0.89 GFF5213 Formyltetrahydrofolate deformylase — —
Pseudomonas sp. RS175 0.81 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.92 PFR28_03439 Formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS00120 shikimate dehydrogenase 0.92 PFLU_RS24200 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens SBW25 0.81 PFLU_RS00120 shikimate dehydrogenase 0.92 PFLU_RS24200 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_11315 shikimate dehydrogenase 0.92 AO356_17895 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.92 Pf6N2E2_5508 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Pseudomonas sp. SVBP6 0.80 COO64_RS02250 aroE shikimate dehydrogenase 0.89 COO64_RS12215 purU formyltetrahydrofolate deformylase — —
Pseudomonas sp. BP01 0.77 JOY50_RS08210 aroE shikimate dehydrogenase 0.88 JOY50_RS14345 purU formyltetrahydrofolate deformylase — —
Pseudomonas putida KT2440 0.77 PP_0074 shikimate 5-dehydrogenase 0.89 PP_1367 formyltetrahydrofolate hydrolase — —
Pseudomonas sp. S08-1 0.75 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.91 OH686_18295 formyltetrahydrofolate deformylase low > 80
Pseudomonas stutzeri RCH2 0.73 Psest_0029 shikimate 5-dehydrogenase 0.86 Psest_3178 formyltetrahydrofolate deformylase — —
Pseudomonas aeruginosa PA14 0.70 IKLFDK_25435 shikimate dehydrogenase 0.86 IKLFDK_02535 formyltetrahydrofolate deformylase — —
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_00280 shikimate dehydrogenase 0.38 CSW01_09940 formyltetrahydrofolate deformylase low > 62
Dechlorosoma suillum PS 0.56 Dsui_0443 shikimate 5-dehydrogenase 0.67 Dsui_0762 formyltetrahydrofolate deformylase — —
Shewanella sp. ANA-3 0.53 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.36 Shewana3_2821 purU formyltetrahydrofolate deformylase (RefSeq) low > 73
Marinobacter adhaerens HP15 0.52 HP15_3750 shikimate dehydrogenase 0.61 HP15_1358 formyltetrahydrofolate deformylase — —
Shewanella loihica PV-4 0.51 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.34 Shew_2640 purU formyltetrahydrofolate deformylase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.50 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.36 SO1624 purU formyltetrahydrofolate deformylase (NCBI ptt file) low > 76
Escherichia coli Nissle 1917 0.49 ECOLIN_RS18840 shikimate dehydrogenase 0.39 ECOLIN_RS07460 formyltetrahydrofolate deformylase low > 55
Escherichia coli BL21 0.49 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.39 ECD_01208 formyltetrahydrofolate hydrolase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.39 OHPLBJKB_02453 Formyltetrahydrofolate deformylase low > 73
Escherichia coli BW25113 0.49 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.38 b1232 purU formyltetrahydrofolate deformylase (NCBI) low > 76
Escherichia coli ECRC62 0.49 BNILDI_02165 aroE shikimate dehydrogenase 0.38 BNILDI_18635 purU formyltetrahydrofolate deformylase low > 75
Escherichia coli ECOR27 0.49 NOLOHH_09355 aroE shikimate dehydrogenase 0.39 NOLOHH_20480 purU formyltetrahydrofolate deformylase low > 75
Escherichia coli ECRC100 0.49 OKFHMN_17565 aroE shikimate dehydrogenase 0.39 OKFHMN_28570 purU formyltetrahydrofolate deformylase low > 80
Escherichia coli ECRC98 0.49 JDDGAC_21185 aroE shikimate dehydrogenase 0.39 JDDGAC_06005 purU formyltetrahydrofolate deformylase low > 86
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS27130 shikimate dehydrogenase 0.66 QEN71_RS33925 formyltetrahydrofolate deformylase low > 153
Escherichia coli ECRC102 0.49 NIAGMN_15325 aroE shikimate dehydrogenase 0.39 NIAGMN_27665 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC99 0.49 KEDOAH_10585 aroE shikimate dehydrogenase 0.39 KEDOAH_25565 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC101 0.49 MCAODC_08085 aroE shikimate dehydrogenase 0.39 MCAODC_21690 purU formyltetrahydrofolate deformylase low > 87
Pantoea sp. MT58 0.49 IAI47_02315 shikimate dehydrogenase 0.38 IAI47_09010 formyltetrahydrofolate deformylase — —
Escherichia fergusonii Becca 0.48 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.39 EFB2_02694 Formyltetrahydrofolate deformylase low > 86
Escherichia coli ECOR38 0.47 HEPCGN_16385 aroE shikimate dehydrogenase 0.39 HEPCGN_25030 purU formyltetrahydrofolate deformylase low > 87
Dickeya dianthicola ME23 0.47 DZA65_RS20315 shikimate dehydrogenase 0.39 DZA65_RS10810 formyltetrahydrofolate deformylase — —
Shewanella amazonensis SB2B 0.47 Sama_0052 shikimate dehydrogenase (RefSeq) 0.37 Sama_1134 purU formyltetrahydrofolate deformylase (RefSeq) low > 62
Klebsiella michiganensis M5al 0.47 BWI76_RS25645 shikimate dehydrogenase 0.38 BWI76_RS17290 formyltetrahydrofolate deformylase low > 92
Enterobacter sp. TBS_079 0.47 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.38 MPMX20_02596 Formyltetrahydrofolate deformylase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.39 GFF2756 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 78
Dickeya dianthicola 67-19 0.46 HGI48_RS19190 shikimate dehydrogenase 0.39 HGI48_RS10335 formyltetrahydrofolate deformylase — —
Dickeya dadantii 3937 0.46 DDA3937_RS19100 shikimate dehydrogenase 0.39 DDA3937_RS10325 formyltetrahydrofolate deformylase — —
Serratia liquefaciens MT49 0.46 IAI46_23240 shikimate dehydrogenase 0.38 IAI46_14265 formyltetrahydrofolate deformylase low > 86
Enterobacter asburiae PDN3 0.46 EX28DRAFT_0046 shikimate dehydrogenase 0.38 EX28DRAFT_0858 formyltetrahydrofolate deformylase low > 76
Pectobacterium carotovorum WPP14 0.46 HER17_RS02250 shikimate dehydrogenase 0.38 HER17_RS11065 formyltetrahydrofolate deformylase low > 75
Erwinia tracheiphila SCR3 0.44 LU632_RS22445 aroE shikimate dehydrogenase 0.39 LU632_RS12940 purU formyltetrahydrofolate deformylase 0.44 61
Rahnella sp. WP5 0.44 EX31_RS15950 shikimate dehydrogenase 0.40 EX31_RS10115 formyltetrahydrofolate deformylase — —
Methylophilus sp. DMC18 0.44 GFF2019 Shikimate dehydrogenase (NADP(+)) 0.50 GFF2208 Formyltetrahydrofolate deformylase — —
Erwinia amylovora T8 0.43 OLJFJH_03685 shikimate dehydrogenase 0.39 OLJFJH_13275 formyltetrahydrofolate deformylase — —
Alteromonas macleodii MIT1002 0.37 MIT1002_00029 Shikimate dehydrogenase 0.60 MIT1002_00404 Formyltetrahydrofolate deformylase — —
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.41 MPMX26_00378 Formyltetrahydrofolate deformylase low > 36
Synechocystis sp000284455 PCC 6803 0.17 SGL_RS17415 shikimate dehydrogenase 0.45 SGL_RS13830 formyltetrahydrofolate deformylase — —
Sphingomonas koreensis DSMZ 15582 0.16 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.46 Ga0059261_1821 formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 68
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.37 CA265_RS21155 formyltetrahydrofolate deformylase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS20055 shikimate dehydrogenase 0.36 ABZR88_RS14140 formyltetrahydrofolate deformylase — —

Not shown: 42 genomes with orthologs for Psyr_0025 only; 8 genomes with orthologs for Psyr_4018 only