Conservation of cofitness between Psyr_0222 and Psyr_1010 in Pseudomonas syringae pv. syringae B728a

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0222 DNA replication and repair protein RadC 1.0 Psyr_1010 Glutathione peroxidase 0.28 19
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0222 DNA replication and repair protein RadC 1.00 Psyr_1010 Glutathione peroxidase low > 86
Pseudomonas fluorescens FW300-N2E3 0.78 AO353_09220 hypothetical protein 0.82 AO353_05050 glutathione peroxidase low > 101
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_2126 DNA repair protein RadC 0.73 Pf1N1B4_1051 Glutathione peroxidase family protein low > 87
Pseudomonas sp. RS175 0.77 PFR28_04412 hypothetical protein 0.84 PFR28_00198 Thioredoxin/glutathione peroxidase BtuE low > 88
Pseudomonas stutzeri RCH2 0.76 Psest_3803 DNA repair protein radc 0.74 Psest_3211 Glutathione peroxidase — —
Pseudomonas lactucae CFBP13502 0.76 GEMAOFIL_00021 hypothetical protein 0.85 GEMAOFIL_04858 Thioredoxin/glutathione peroxidase BtuE low > 96
Pseudomonas fluorescens SBW25 0.75 PFLU_RS29445 JAB domain-containing protein 0.85 PFLU_RS25350 glutathione peroxidase low > 109
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS29445 JAB domain-containing protein 0.85 PFLU_RS25350 glutathione peroxidase low > 109
Pseudomonas orientalis W4I3 0.75 QF045_RS02120 DNA repair protein RadC 0.85 QF045_RS25790 glutathione peroxidase low > 93
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_4377 DNA repair protein RadC 0.83 Pf6N2E2_5263 Glutathione peroxidase family protein low > 103
Pseudomonas sp. DMC3 0.75 GFF403 hypothetical protein 0.82 GFF1853 Thioredoxin/glutathione peroxidase BtuE low > 89
Pseudomonas simiae WCS417 0.75 PS417_27770 hypothetical protein 0.85 PS417_23535 glutathione peroxidase low > 88
Pseudomonas sp. SVBP6 0.74 COO64_RS01465 radC DNA repair protein RadC 0.83 COO64_RS03485 glutathione peroxidase low > 93
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_12545 hypothetical protein 0.84 AO356_16695 glutathione peroxidase low > 104
Pseudomonas segetis P6 0.73 ACVTMO_RS00105 radC RadC family protein 0.75 ACVTMO_RS18235 glutathione peroxidase low > 75
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_798 DNA repair protein RadC 0.81 PfGW456L13_4987 Glutathione peroxidase family protein low > 87
Pseudomonas sp. S08-1 0.71 OH686_13620 UPF0758 family protein 0.80 OH686_06250 Glutathione peroxidase or Thioredoxin peroxidase low > 80
Pseudomonas aeruginosa PUPa3 0.70 DQ20_RS49645 radC;go_function=DNA DNA repair protein RadC 0.75 DQ20_RS44520 glutathione peroxidase low > 101
Pseudomonas aeruginosa PA14 0.70 IKLFDK_26860 DNA repair protein RadC 0.75 IKLFDK_03690 glutathione peroxidase low > 98
Pseudomonas aeruginosa MRSN321 0.70 DY961_RS12485 radC;go_function=DNA DNA repair protein RadC 0.75 DY961_RS08300 glutathione peroxidase low > 100
Pseudomonas putida KT2440 0.66 PP_5284 UPF0758 protein PP_5284 0.83 PP_0777 Glutathione peroxidase low > 96
Pseudomonas sp. BP01 0.65 JOY50_RS09060 radC DNA repair protein RadC 0.81 JOY50_RS19370 glutathione peroxidase low > 84
Cupriavidus basilensis FW507-4G11 0.52 RR42_RS16995 hypothetical protein 0.49 RR42_RS00280 glutathione peroxidase low > 128
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.4897.1 DNA repair protein RadC 0.48 Xcc-8004.5371.1 Glutathione peroxidase family protein low > 74
Pantoea agglomerans CFBP13505 P0401 0.49 PagCFBP13505_RS18725 JAB domain-containing protein 0.51 PagCFBP13505_RS17650 glutathione peroxidase low > 74
Pantoea sp. MT58 0.49 IAI47_00620 DNA repair protein RadC 0.50 IAI47_10940 glutathione peroxidase low > 76
Dickeya dianthicola 67-19 0.48 HGI48_RS00700 DNA repair protein RadC 0.53 HGI48_RS13030 glutathione peroxidase low > 71
Dickeya dianthicola ME23 0.48 DZA65_RS00755 JAB domain-containing protein 0.52 DZA65_RS13495 glutathione peroxidase low > 75
Dickeya dadantii 3937 0.47 DDA3937_RS20515 DNA repair protein RadC 0.53 DDA3937_RS12960 glutathione peroxidase low > 74
Serratia liquefaciens MT49 0.46 IAI46_24825 DNA repair protein RadC 0.53 IAI46_11005 glutathione peroxidase low > 87
Pectobacterium carotovorum WPP14 0.44 HER17_RS20830 DNA repair protein RadC 0.50 HER17_RS08825 glutathione peroxidase low > 75
Rahnella sp. WP5 0.44 EX31_RS14470 JAB domain-containing protein 0.51 EX31_RS14030 glutathione peroxidase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF371 DNA repair protein RadC 0.50 GFF3530 Glutathione peroxidase family protein — —
Escherichia coli ECOR27 0.44 NOLOHH_07500 radC DNA repair protein RadC 0.48 NOLOHH_17625 btuE bifunctional thioredoxin/glutathione peroxidase low > 76
Escherichia fergusonii Becca 0.44 EFB2_00175 hypothetical protein 0.48 EFB2_02281 Thioredoxin/glutathione peroxidase BtuE low > 86
Escherichia coli ECRC99 0.44 KEDOAH_12530 radC DNA repair protein RadC 0.48 KEDOAH_01005 btuE bifunctional thioredoxin/glutathione peroxidase — —
Escherichia coli ECOR38 0.44 HEPCGN_14445 radC DNA repair protein RadC 0.47 HEPCGN_05470 btuE bifunctional thioredoxin/glutathione peroxidase low > 88
Escherichia coli ECRC102 0.44 NIAGMN_13380 radC DNA repair protein RadC 0.48 NIAGMN_00960 btuE bifunctional thioredoxin/glutathione peroxidase — —
Escherichia coli Nissle 1917 0.44 ECOLIN_RS20730 DNA repair protein RadC 0.48 ECOLIN_RS09555 bifunctional thioredoxin/glutathione peroxidase — —
Escherichia coli ECRC100 0.44 OKFHMN_15620 radC DNA repair protein RadC 0.48 OKFHMN_27105 btuE bifunctional thioredoxin/glutathione peroxidase low > 79
Escherichia coli BW25113 0.44 b3638 radC DNA repair protein (VIMSS) 0.49 b1710 btuE predicted glutathione peroxidase (NCBI) low > 76
Escherichia coli ECRC98 0.44 JDDGAC_19245 radC DNA repair protein RadC 0.48 JDDGAC_01680 btuE bifunctional thioredoxin/glutathione peroxidase low > 87
Escherichia coli ECRC101 0.44 MCAODC_06130 radC DNA repair protein RadC 0.48 MCAODC_18305 btuE bifunctional thioredoxin/glutathione peroxidase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00064 hypothetical protein 0.48 OHPLBJKB_02023 Thioredoxin/glutathione peroxidase BtuE low > 74
Escherichia coli BL21 0.44 ECD_03495 UPF0758 family protein 0.49 ECD_01679 glutathione peroxidase low > 61
Erwinia tracheiphila HP pepo 2.2 0.43 IJEDHG_07780 radC DNA repair protein RadC 0.51 IJEDHG_25415 btuE glutathione peroxidase low > 61
Erwinia tracheiphila SCR3 0.43 LU632_RS21995 radC DNA repair protein RadC 0.51 LU632_RS10960 glutathione peroxidase low > 73
Erwinia amylovora T8 0.43 OLJFJH_05795 DNA repair protein RadC 0.50 OLJFJH_14665 glutathione peroxidase low > 58
Enterobacter sp. TBS_079 0.41 MPMX20_00097 hypothetical protein 0.50 MPMX20_01903 Thioredoxin/glutathione peroxidase BtuE low > 85
Acidovorax sp. GW101-3H11 0.41 Ac3H11_1774 DNA repair protein RadC 0.52 Ac3H11_2738 Glutathione peroxidase family protein low > 79
Enterobacter asburiae PDN3 0.41 EX28DRAFT_3888 DNA repair protein radc 0.51 EX28DRAFT_1717 Glutathione peroxidase low > 76
Klebsiella pneumoniae MKP103 0.40 KDGMDA_08030 DNA repair protein RadC 0.51 KDGMDA_24320 glutathione peroxidase low > 95
Klebsiella michiganensis M5al 0.40 BWI76_RS27365 hypothetical protein 0.50 BWI76_RS17100 glutathione peroxidase low > 92
Bacteroides thetaiotaomicron VPI-5482 0.28 BT3695 putative DNA repair protein (NCBI ptt file) 0.45 BT3971 glutathione peroxidase (NCBI ptt file) low > 81
Xanthobacter sp. DMC5 0.28 GFF65 hypothetical protein 0.55 GFF246 Thioredoxin/glutathione peroxidase BtuE — —
Bacteroides ovatus ATCC 8483 0.28 BACOVA_03503 DNA repair protein RadC 0.47 BACOVA_04616 glutathione peroxidase low > 96
Synechocystis sp000284455 PCC 6803 0.27 SGL_RS13075 DNA repair protein RadC 0.49 SGL_RS08615 glutathione peroxidase low > 52
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS08525 DNA repair protein RadC 0.44 HMPREF1058_RS03555 glutathione peroxidase low > 67
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS02750 DNA repair protein RadC 0.45 ABI39_RS17600 glutathione peroxidase low > 72
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS02725 hypothetical protein 0.39 CA265_RS07120 glutathione peroxidase low > 88
Synechococcus elongatus PCC 7942 0.24 Synpcc7942_1227 radC DNA repair protein RadC 0.47 Synpcc7942_1214 gpx1 Glutathione peroxidase low > 38
Sphingomonas koreensis DSMZ 15582 0.23 Ga0059261_3175 DNA repair protein radc 0.50 Ga0059261_2794 Glutathione peroxidase low > 68

Not shown: 47 genomes with orthologs for Psyr_0222 only; 2 genomes with orthologs for Psyr_1010 only