Conservation of cofitness between PfGW456L13_1574 and PfGW456L13_2636 in Pseudomonas fluorescens GW456-L13

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens GW456-L13 1.0 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF 1.0 PfGW456L13_2636 FIG002776: hypothetical protein 0.53 12
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_16450 GTP-binding protein 0.92 AO356_22095 cupin 0.68 2
Pseudomonas sp. RS175 0.97 PFR28_03664 Ribosome-binding ATPase YchF 0.92 PFR28_02622 50S ribosomal protein L16 3-hydroxylase — —
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF 0.95 Pf1N1B4_4045 FIG002776: hypothetical protein — —
Pseudomonas simiae WCS417 0.97 PS417_03560 GTP-binding protein 0.89 PS417_16555 cupin 0.36 3
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_14740 GTP-binding protein 0.93 AO353_27720 cupin 0.63 3
Pseudomonas syringae pv. syringae B728a ΔmexB 0.96 Psyr_0941 Conserved hypothetical protein 92 0.90 Psyr_3193 Transcription factor jumonji, jmjC low > 86
Pseudomonas syringae pv. syringae B728a 0.96 Psyr_0941 Conserved hypothetical protein 92 0.90 Psyr_3193 Transcription factor jumonji, jmjC low > 86
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS03610 redox-regulated ATPase YchF 0.89 PFLU_RS18595 cupin domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.96 PFLU_RS03610 redox-regulated ATPase YchF 0.89 PFLU_RS18595 cupin domain-containing protein low > 109
Pseudomonas putida KT2440 0.94 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.82 PP_4017 conserved protein of unknown function — —
Pseudomonas sp. S08-1 0.92 OH686_07965 GTP-binding and nucleic acid-binding protein YchF 0.81 OH686_00190 hypothetical protein — —
Pseudomonas stutzeri RCH2 0.91 Psest_1103 GTP-binding protein YchF 0.82 Psest_2018 Uncharacterized conserved protein 0.32 3
Acinetobacter radioresistens SK82 0.77 MPMX26_01861 Ribosome-binding ATPase YchF 0.35 MPMX26_01736 putative ribosomal oxygenase low > 36
Marinobacter adhaerens HP15 0.76 HP15_704 translation-associated GTPase 0.46 HP15_2089 cupin 4 family protein — —
Shewanella sp. ANA-3 0.73 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.31 Shewana3_1744 cupin 4 family protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.73 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) 0.31 SO2636 conserved hypothetical protein (NCBI ptt file) low > 76
Escherichia coli ECRC62 0.72 BNILDI_18805 ychF redox-regulated ATPase YchF 0.32 BNILDI_19090 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase low > 75
Shewanella amazonensis SB2B 0.72 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.28 Sama_2065 cupin 4 (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.72 LU632_RS13950 ychF redox-regulated ATPase YchF 0.30 LU632_RS14600 cupin domain-containing protein low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2784 GTP-binding and nucleic acid-binding protein YchF 0.31 GFF3413 FIG002776: hypothetical protein low > 78
Escherichia coli ECRC101 0.71 MCAODC_21850 ychF redox-regulated ATPase YchF 0.32 MCAODC_22450 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase low > 87
Escherichia coli ECRC102 0.71 NIAGMN_27825 ychF redox-regulated ATPase YchF 0.32 NIAGMN_24760 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase — —
Escherichia coli ECOR38 0.71 HEPCGN_24875 ychF redox-regulated ATPase YchF 0.32 HEPCGN_24085 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase low > 87
Escherichia coli ECRC98 0.71 JDDGAC_06165 ychF redox-regulated ATPase YchF 0.32 JDDGAC_06730 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_02484 Ribosome-binding ATPase YchF 0.32 OHPLBJKB_02540 50S ribosomal protein L16 3-hydroxylase low > 73
Escherichia coli ECRC99 0.71 KEDOAH_25405 ychF redox-regulated ATPase YchF 0.32 KEDOAH_24720 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase — —
Escherichia coli ECOR27 0.71 NOLOHH_20650 ychF redox-regulated ATPase YchF 0.32 NOLOHH_20925 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase — —
Escherichia coli BW25113 0.71 b1203 ychF translation-associated GTPase (NCBI) 0.32 b1128 ycfD orf, hypothetical protein (VIMSS) — —
Escherichia coli ECRC100 0.71 OKFHMN_28410 ychF redox-regulated ATPase YchF 0.32 OKFHMN_00635 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS07280 redox-regulated ATPase YchF 0.32 ECOLIN_RS06500 [50S ribosomal protein L16]-arginine 3-hydroxylase low > 55
Escherichia fergusonii Becca 0.71 EFB2_02724 Ribosome-binding ATPase YchF 0.32 EFB2_02847 50S ribosomal protein L16 3-hydroxylase low > 86
Escherichia coli BL21 0.71 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated 0.32 ECD_01126 50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase — —
Pantoea sp. MT58 0.71 IAI47_11310 redox-regulated ATPase YchF 0.29 IAI47_11940 cupin domain-containing protein low > 76
Erwinia amylovora T8 0.71 OLJFJH_14950 redox-regulated ATPase YchF 0.30 OLJFJH_15280 50S ribosomal protein L16 arginine hydroxylase low > 58
Dickeya dianthicola ME23 0.71 DZA65_RS11435 redox-regulated ATPase YchF 0.31 DZA65_RS15735 cupin domain-containing protein low > 75
Dickeya dadantii 3937 0.71 DDA3937_RS11035 redox-regulated ATPase YchF 0.31 DDA3937_RS11510 cupin domain-containing protein low > 74
Dickeya dianthicola 67-19 0.71 HGI48_RS10975 redox-regulated ATPase YchF 0.31 HGI48_RS14985 cupin domain-containing protein low > 71
Pectobacterium carotovorum WPP14 0.70 HER17_RS10445 redox-regulated ATPase YchF 0.30 HER17_RS19385 cupin domain-containing protein low > 75
Shewanella loihica PV-4 0.70 Shew_2919 translation-associated GTPase (RefSeq) 0.30 Shew_1557 cupin 4 family protein (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_2052 GTP-binding protein YchF 0.30 B158DRAFT_2496 Uncharacterized conserved protein low > 40
Lysobacter sp. OAE881 0.70 ABIE51_RS05745 redox-regulated ATPase YchF 0.40 ABIE51_RS09000 cupin domain-containing protein 0.48 44
Klebsiella michiganensis M5al 0.70 BWI76_RS17485 GTP-binding protein YchF 0.31 BWI76_RS11270 50S ribosomal protein L16 arginine hydroxylase — —
Enterobacter sp. TBS_079 0.69 MPMX20_02645 Ribosome-binding ATPase YchF 0.32 MPMX20_01809 50S ribosomal protein L16 3-hydroxylase low > 85
Enterobacter asburiae PDN3 0.69 EX28DRAFT_0821 GTP-binding protein YchF 0.32 EX28DRAFT_1802 Uncharacterized conserved protein — —
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS22010 redox-regulated ATPase YchF 0.39 ABZR86_RS05910 cupin domain-containing protein 0.85 1
Rahnella sp. WP5 0.69 EX31_RS07380 redox-regulated ATPase YchF 0.31 EX31_RS24550 cupin domain-containing protein low > 89
Alteromonas macleodii MIT1002 0.69 MIT1002_01504 Ribosome-binding ATPase YchF 0.26 MIT1002_01824 50S ribosomal protein L16 arginine hydroxylase low > 70
Serratia liquefaciens MT49 0.68 IAI46_10240 redox-regulated ATPase YchF 0.30 IAI46_02005 cupin domain-containing protein — —
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_10565 Ribosome-binding ATPase YchF 0.37 OKGIIK_05950 roxA transcription factor low > 52
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS03675 redox-regulated ATPase YchF 0.37 LRK54_RS00940 cupin domain-containing protein low > 59
Rhodanobacter denitrificans MT42 0.67 LRK55_RS03425 redox-regulated ATPase YchF 0.38 LRK55_RS00715 cupin domain-containing protein low > 63
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS18365 GTP-binding protein 0.30 RR42_RS06270 cupin 0.32 46
Acidovorax sp. GW101-3H11 0.63 Ac3H11_4001 GTP-binding and nucleic acid-binding protein YchF 0.31 Ac3H11_282 FIG074102: hypothetical protein — —
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS20405 GTP-binding protein YchF 0.33 HSERO_RS16375 cupin low > 78
Synechococcus elongatus PCC 7942 0.51 Synpcc7942_0554 ychF translation-associated GTPase 0.08 Synpcc7942_0373 hypothetical protein low > 38

Not shown: 48 genomes with orthologs for PfGW456L13_1574 only; 1 genomes with orthologs for PfGW456L13_2636 only