Conservation of cofitness between Pf1N1B4_57 and Pf1N1B4_3543 in Pseudomonas fluorescens FW300-N1B4

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_57 tRNA dihydrouridine synthase A 1.0 Pf1N1B4_3543 Potassium uptake protein TrkH 0.26 8
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_00295 tRNA-dihydrouridine synthase A 0.93 AO353_18480 potassium transporter TrkH low > 101
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_2257 tRNA dihydrouridine synthase A 0.92 Pf6N2E2_2634 Potassium uptake protein TrkH low > 103
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_02170 tRNA-dihydrouridine synthase A 0.92 AO356_03995 potassium transporter TrkH low > 104
Pseudomonas sp. RS175 0.93 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase 0.91 PFR28_00798 Trk system potassium uptake protein TrkI 0.36 31
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_3987 tRNA dihydrouridine synthase A 0.96 PfGW456L13_4413 Potassium uptake protein TrkH low > 87
Pseudomonas fluorescens SBW25 0.90 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.89 PFLU_RS23830 TrkH family potassium uptake protein 0.80 17
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.89 PFLU_RS23830 TrkH family potassium uptake protein low > 109
Pseudomonas simiae WCS417 0.90 PS417_07740 tRNA-dihydrouridine synthase A 0.93 PS417_22205 potassium transporter TrkH low > 88
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.87 Psyr_3593 K+ transporter Trk low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.87 Psyr_3593 K+ transporter Trk low > 86
Pseudomonas putida KT2440 0.84 PP_2169 tRNA-dihydrouridine synthase A 0.89 PP_4507 potassium transporter 0.25 28
Pseudomonas sp. S08-1 0.84 OH686_22745 tRNA-dihydrouridine(20/20a) synthase 0.78 OH686_20750 Trk potassium uptake system protein TrkH
Pseudomonas stutzeri RCH2 0.82 Psest_2706 tRNA dihydrouridine synthase A 0.65 Psest_1879 Trk-type K+ transport systems, membrane components low > 67
Marinobacter adhaerens HP15 0.63 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN 0.41 HP15_1705 potassium uptake protein, TrkH family
Shewanella loihica PV-4 0.59 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) 0.44 Shew_3740 TrkH family potassium uptake protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.59 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) 0.47 Sama_0039 potassium uptake protein TrkH (RefSeq) low > 62
Shewanella sp. ANA-3 0.59 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) 0.44 Shewana3_0031 TrkH family potassium uptake protein (RefSeq) low > 73
Escherichia coli ECRC62 0.59 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.24 BNILDI_05170 trkH Trk system potassium transporter TrkH low > 75
Escherichia coli ECRC102 0.59 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.24 NIAGMN_11985 trkH Trk system potassium transporter TrkH
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase 0.24 OHPLBJKB_04204 Trk system potassium uptake protein TrkH low > 73
Escherichia coli ECOR27 0.59 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.25 NOLOHH_19715 trkG Trk system potassium transporter TrkG
Escherichia coli ECRC99 0.59 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.24 KEDOAH_13920 trkH Trk system potassium transporter TrkH
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA 0.49 CSW01_00215 potassium uptake protein TrkH low > 62
Escherichia coli ECRC100 0.59 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.24 OKFHMN_14230 trkH Trk system potassium transporter TrkH
Escherichia coli BW25113 0.59 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.25 b1363 trkG Rac prophage; potassium transporter subunit (NCBI) low > 76
Escherichia coli ECRC98 0.59 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.24 JDDGAC_17855 trkH Trk system potassium transporter TrkH
Escherichia coli BL21 0.59 ECD_03921 tRNA-dihydrouridine synthase A 0.25 ECD_01339 Rac prophage; potassium transporter subunit
Escherichia coli ECOR38 0.59 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.24 HEPCGN_12860 trkH Trk system potassium transporter TrkH low > 87
Escherichia coli Nissle 1917 0.59 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA 0.24 ECOLIN_RS22195 Trk system potassium transporter TrkH
Serratia liquefaciens MT49 0.58 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA 0.28 IAI46_08985 potassium transporter TrkG low > 86
Escherichia fergusonii Becca 0.58 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.24 EFB2_04768 Trk system potassium uptake protein TrkH low > 86
Shewanella oneidensis MR-1 0.58 SO3912 TIM-barrel protein, yjbN family (NCBI ptt file) 0.44 SO0028 trkH-2 potassium uptake protein TrkH (NCBI ptt file) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) 0.24 GFF276 Potassium uptake protein TrkH low > 78
Rahnella sp. WP5 0.58 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA 0.26 EX31_RS14550 Trk system potassium transporter TrkH low > 89
Pectobacterium carotovorum WPP14 0.58 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA 0.24 HER17_RS20535 Trk system potassium transporter TrkH low > 75
Escherichia coli ECRC101 0.58 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.24 MCAODC_04735 trkH Trk system potassium transporter TrkH
Enterobacter sp. TBS_079 0.58 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase 0.27 MPMX20_03858 Trk system potassium uptake protein TrkG low > 85
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4263 tRNA dihydrouridine synthase A 0.27 EX28DRAFT_3052 potassium uptake protein, TrkH family low > 76
Klebsiella michiganensis M5al 0.58 BWI76_RS01900 tRNA-dihydrouridine synthase A 0.24 BWI76_RS01385 potassium transporter low > 92
Dickeya dadantii 3937 0.57 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA 0.26 DDA3937_RS20235 Trk system potassium transporter TrkH low > 74
Dickeya dianthicola ME23 0.57 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA 0.26 DZA65_RS01050 Trk system potassium transporter TrkH low > 75
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_2018 tRNA dihydrouridine synthase A 0.28 B158DRAFT_0394 potassium uptake protein, TrkH family
Dickeya dianthicola 67-19 0.57 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA 0.26 HGI48_RS00990 Trk system potassium transporter TrkH 0.61 51
Acinetobacter radioresistens SK82 0.57 MPMX26_00482 tRNA-dihydrouridine(20/20a) synthase 0.06 MPMX26_01276 Ktr system potassium uptake protein B
Pantoea sp. MT58 0.56 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA 0.25 IAI47_18215 Trk system potassium transporter TrkH low > 76
Azospirillum brasilense Sp245 0.55 AZOBR_RS15935 tRNA-dihydrouridine synthase A 0.40 AZOBR_RS10695 potassium transporter TrkH low > 97
Hydrogenophaga sp. GW460-11-11-14-LB1 0.54 GFF4791 tRNA dihydrouridine synthase A 0.26 GFF1719 Potassium uptake protein TrkH low > 90
Alteromonas macleodii MIT1002 0.53 MIT1002_03387 putative tRNA-dihydrouridine synthase 0.30 MIT1002_00016 Trk system potassium uptake protein TrkH
Acidovorax sp. GW101-3H11 0.53 Ac3H11_2288 tRNA dihydrouridine synthase A 0.27 Ac3H11_706 Potassium uptake protein TrkH low > 79
Erwinia tracheiphila SCR3 0.52 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.24 LU632_RS23935 trkH Trk system potassium transporter TrkH low > 74
Rhodospirillum rubrum S1H 0.50 Rru_A1621 Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) 0.40 Rru_A1134 Cation transporter (NCBI)
Dinoroseobacter shibae DFL-12 0.50 Dshi_2512 TIM-barrel protein, yjbN family (RefSeq) 0.39 Dshi_2406 cation transporter (RefSeq)
Agrobacterium fabrum C58 0.48 Atu1515 hypothetical protein 0.31 Atu1204 potassium uptake protein low > 89
Phaeobacter inhibens DSM 17395 0.45 PGA1_c19230 tRNA-dihydrouridine synthase A 0.39 PGA1_c23520 trk system potassium uptake protein
Sinorhizobium meliloti 1021 0.44 SMc04235 tRNA-dihydrouridine synthase A 0.32 SMa1691 Cation transport ATPase low > 103

Not shown: 28 genomes with orthologs for Pf1N1B4_57 only; 13 genomes with orthologs for Pf1N1B4_3543 only