Conservation of cofitness between Pf1N1B4_1091 and Pf1N1B4_2412 in Pseudomonas fluorescens FW300-N1B4

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_1091 FIG138315: Putative alpha helix protein 1.0 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA 0.41 1
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_5025 FIG138315: Putative alpha helix protein 0.94 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA low > 87
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_05210 hypothetical protein 0.96 AO353_07850 ATP-dependent RNA helicase low > 101
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_07090 hypothetical protein 0.96 AO356_13770 ATP-dependent RNA helicase low > 104
Pseudomonas fluorescens FW300-N2E2 0.95 Pf6N2E2_3279 FIG138315: Putative alpha helix protein 0.96 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA low > 103
Pseudomonas sp. RS175 0.93 PFR28_00162 hypothetical protein 0.94 PFR28_04172 ATP-dependent RNA helicase DbpA low > 88
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS04345 ribosome-associated protein 0.93 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.35 7
Pseudomonas fluorescens SBW25 0.91 PFLU_RS04345 ribosome-associated protein 0.93 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.39 49
Pseudomonas simiae WCS417 0.91 PS417_04290 hypothetical protein 0.93 PS417_26370 RNA helicase 0.57 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_4155 Protein of unknown function DUF615 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA 0.31 73
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_4155 Protein of unknown function DUF615 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA low > 86
Pseudomonas sp. S08-1 0.80 OH686_08575 UPF0307 protein YjgA 0.76 OH686_14770 ATP-dependent 23S rRNA helicase DbpA low > 80
Pseudomonas stutzeri RCH2 0.78 Psest_3319 Uncharacterized protein conserved in bacteria 0.84 Psest_0344 Superfamily II DNA and RNA helicases 0.19 30
Pseudomonas putida KT2440 0.75 PP_0941 putative ribosome associated protein 0.84 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA low > 96
Pectobacterium carotovorum WPP14 0.38 HER17_RS20095 ribosome-associated protein 0.57 HER17_RS06775 ATP-dependent RNA helicase DbpA — —
Marinobacter adhaerens HP15 0.37 HP15_2448 protein belonging to uncharacterized protein family UPF0307 0.59 HP15_1329 DEAD/DEAH box helicase domain protein low > 73
Serratia liquefaciens MT49 0.36 IAI46_22590 ribosome-associated protein 0.58 IAI46_14765 ATP-dependent RNA helicase DbpA — —
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.1884.1 FIG138315: Putative alpha helix protein 0.50 Xcc-8004.2274.1 ATP-dependent 23S rRNA helicase DbpA — —
Dickeya dadantii 3937 0.36 DDA3937_RS01495 ribosome-associated protein 0.53 DDA3937_RS11045 ATP-dependent RNA helicase DbpA low > 74
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_2073 Uncharacterized protein conserved in bacteria 0.51 B158DRAFT_2047 ATP-dependent RNA helicase DbpA (EC 5.99.1.-) low > 40
Enterobacter asburiae PDN3 0.34 EX28DRAFT_3421 Uncharacterized protein conserved in bacteria 0.53 EX28DRAFT_1006 Superfamily II DNA and RNA helicases — —
Enterobacter sp. TBS_079 0.34 MPMX20_00516 hypothetical protein 0.52 MPMX20_02441 ATP-dependent RNA helicase DbpA — —
Dickeya dianthicola ME23 0.34 DZA65_RS01475 ribosome-associated protein 0.53 DZA65_RS11470 ATP-dependent RNA helicase DbpA — —
Pantoea sp. MT58 0.34 IAI47_02760 ribosome-associated protein 0.51 IAI47_15055 ATP-dependent RNA helicase DbpA — —
Dickeya dianthicola 67-19 0.34 HGI48_RS01410 ribosome-associated protein 0.53 HGI48_RS11065 ATP-dependent RNA helicase DbpA low > 71
Rahnella sp. WP5 0.34 EX31_RS12315 ribosome-associated protein 0.56 EX31_RS24740 ATP-dependent RNA helicase DbpA low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF903 FIG138315: Putative alpha helix protein 0.52 GFF2649 ATP-dependent 23S rRNA helicase DbpA — —
Erwinia tracheiphila SCR3 0.33 LU632_RS02140 ribosome-associated protein 0.51 LU632_RS11995 dbpA ATP-dependent RNA helicase DbpA low > 74
Escherichia coli ECRC99 0.33 KEDOAH_16225 yjgA ribosome-associated protein 0.51 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC102 0.33 NIAGMN_09780 yjgA ribosome-associated protein 0.51 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli BL21 0.33 ECD_04102 ribosome-associated UPF0307 family protein 0.51 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA low > 61
Escherichia coli Nissle 1917 0.33 ECOLIN_RS24565 ribosome biogenesis factor YjgA 0.52 ECOLIN_RS08060 ATP-dependent RNA helicase DbpA low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_03801 hypothetical protein 0.51 OHPLBJKB_02338 ATP-dependent RNA helicase DbpA low > 73
Escherichia coli ECOR38 0.33 HEPCGN_10130 yjgA ribosome-associated protein 0.52 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA low > 87
Escherichia coli BW25113 0.33 b4234 yjgA hypothetical protein (NCBI) 0.51 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) low > 76
Escherichia coli ECRC62 0.33 BNILDI_07320 yjgA ribosome-associated protein 0.52 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA low > 75
Escherichia coli ECRC98 0.33 JDDGAC_15570 yjgA ribosome-associated protein 0.51 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA low > 86
Escherichia coli ECOR27 0.33 NOLOHH_04190 yjgA ribosome-associated protein 0.52 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA low > 75
Escherichia coli ECRC100 0.33 OKFHMN_11930 yjgA ribosome-associated protein 0.51 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA low > 80
Escherichia fergusonii Becca 0.33 EFB2_04299 hypothetical protein 0.52 EFB2_02584 ATP-dependent RNA helicase DbpA low > 86
Escherichia coli ECRC101 0.33 MCAODC_02435 yjgA ribosome-associated protein 0.51 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA low > 87
Klebsiella michiganensis M5al 0.32 BWI76_RS02845 hypothetical protein 0.53 BWI76_RS12705 ATP-dependent RNA helicase — —
Lysobacter sp. OAE881 0.32 ABIE51_RS06800 ribosome biogenesis factor YjgA 0.51 ABIE51_RS14930 ATP-dependent RNA helicase DbpA low > 62
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_10270 DUF615 domain-containing protein 0.52 OKGIIK_16320 dbpA ATP-dependent RNA helicase DbpA low > 52
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS21710 ribosome biogenesis factor YjgA 0.53 ABZR86_RS05195 ATP-dependent RNA helicase DbpA low > 74
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS03385 DUF615 domain-containing protein 0.52 LRK54_RS10055 ATP-dependent RNA helicase DbpA — —
Shewanella amazonensis SB2B 0.29 Sama_0481 hypothetical protein (RefSeq) 0.55 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) low > 62
Rhodanobacter denitrificans MT42 0.28 LRK55_RS03135 ribosome biogenesis factor YjgA 0.52 LRK55_RS09695 ATP-dependent RNA helicase DbpA — —
Castellaniella sp019104865 MT123 0.27 ABCV34_RS10615 ribosome biogenesis factor YjgA 0.53 ABCV34_RS04635 ATP-dependent RNA helicase DbpA low > 48
Alteromonas macleodii MIT1002 0.26 MIT1002_00229 x96 protein 0.44 MIT1002_03748 ATP-independent RNA helicase DbpA — —
Shewanella sp. ANA-3 0.24 Shewana3_3632 hypothetical protein (RefSeq) 0.55 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) low > 73
Dechlorosoma suillum PS 0.24 Dsui_1235 hypothetical protein 0.57 Dsui_2946 DNA/RNA helicase, superfamily II low > 51
Shewanella oneidensis MR-1 0.24 SO4079 conserved hypothetical protein (NCBI ptt file) 0.54 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.18 Shew_0415 hypothetical protein (RefSeq) 0.53 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) low > 60

Not shown: 3 genomes with orthologs for Pf1N1B4_1091 only; 14 genomes with orthologs for Pf1N1B4_2412 only