Conservation of cofitness between PP_0850 and PP_4286 in Pseudomonas putida KT2440

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0850 Dual-specificity RNA methyltransferase RlmN 1.0 PP_4286 allantoinase 0.29 16
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase 0.91 AO356_19460 allantoinase (EC 3.5.2.5) (from data) low > 104
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.91 Pf6N2E2_5805 Uricase (urate oxidase) (EC 1.7.3.3) — —
Pseudomonas sp. RS175 0.88 PFR28_00294 Dual-specificity RNA methyltransferase RlmN 0.91 PFR28_03143 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase 0.91 AO353_02320 allantoinase low > 101
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.91 PfGW456L13_4180 Uricase (urate oxidase) (EC 1.7.3.3) low > 87
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.92 PFLU_RS21385 allantoinase PuuE low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.92 PFLU_RS21385 allantoinase PuuE low > 109
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.92 Pf1N1B4_3766 Uricase (urate oxidase) (EC 1.7.3.3) — —
Pseudomonas simiae WCS417 0.87 PS417_23160 50S rRNA methyltransferase 0.91 PS417_19415 allantoinase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.91 Psyr_1809 Polysaccharide deacetylase low > 86
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.91 Psyr_1809 Polysaccharide deacetylase low > 86
Pseudomonas stutzeri RCH2 0.84 Psest_1259 23S rRNA m2A2503 methyltransferase 0.84 Psest_1200 putative urate catabolism protein low > 67
Enterobacter asburiae PDN3 0.55 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.57 EX28DRAFT_1944 putative urate catabolism protein low > 76
Enterobacter sp. TBS_079 0.55 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN 0.57 MPMX20_01662 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.55 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.58 BWI76_RS10540 allantoinase low > 92
Dickeya dadantii 3937 0.55 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.62 DDA3937_RS16690 allantoinase PuuE low > 74
Pectobacterium carotovorum WPP14 0.55 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.62 HER17_RS17765 allantoinase PuuE low > 75
Rahnella sp. WP5 0.54 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 EX31_RS21150 allantoinase PuuE low > 89
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS13155 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.68 RR42_RS05255 allantoinase — —
Dickeya dianthicola ME23 0.54 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 DZA65_RS17850 allantoinase PuuE low > 75
Serratia liquefaciens MT49 0.54 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.62 IAI46_04175 allantoinase PuuE low > 86
Dickeya dianthicola 67-19 0.54 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 HGI48_RS16775 allantoinase PuuE low > 71
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS10900 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.65 ABZR87_RS15095 allantoinase PuuE low > 80
Ralstonia solanacearum PSI07 0.54 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.65 RPSI07_RS14065 allantoinase PuuE 0.42 43
Ralstonia solanacearum GMI1000 0.54 RS_RS06070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.65 RS_RS10635 allantoinase PuuE low > 80
Ralstonia solanacearum UW163 0.54 UW163_RS12725 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.66 UW163_RS10480 allantoinase PuuE — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS15260 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.66 RALBFv3_RS03245 allantoinase PuuE — —
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.2737.1 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.56 Xcc-8004.362.1 Uricase (urate oxidase) (EC 1.7.3.3) 0.31 74
Pantoea sp. MT58 0.53 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 IAI47_15300 allantoinase PuuE low > 76
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS05965 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.63 QEN71_RS07020 allantoinase PuuE low > 153
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN 0.63 BPHYT_RS11555 allantoinase 0.45 17
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_00514 23S rRNA m(2)A-2503 methyltransferase 0.63 H281DRAFT_05158 putative urate catabolism protein — —
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS14810 50S rRNA methyltransferase 0.66 HSERO_RS21280 allantoinase — —
Acidovorax sp. GW101-3H11 0.51 Ac3H11_1791 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.60 Ac3H11_1095 Uricase (urate oxidase) (EC 1.7.3.3) low > 79
Alteromonas macleodii MIT1002 0.50 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN 0.62 MIT1002_01577 putative urate catabolism protein low > 70
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF4866 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.54 GFF3309 Uricase (urate oxidase) (EC 1.7.3.3) low > 90
Variovorax sp. OAS795 0.49 ABID97_RS14210 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.60 ABID97_RS22210 allantoinase PuuE low > 91
Variovorax sp. SCN45 0.49 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) 0.60 GFF1815 Uricase (urate oxidase) (EC 1.7.3.3) low > 127
Castellaniella sp019104865 MT123 0.49 ABCV34_RS02610 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.61 ABCV34_RS06095 allantoinase PuuE low > 48
Azospirillum brasilense Sp245 0.46 AZOBR_RS00800 50S rRNA methyltransferase 0.69 AZOBR_RS14190 chitin deacetylase low > 97
Azospirillum sp. SherDot2 0.46 MPMX19_02413 Dual-specificity RNA methyltransferase RlmN 0.66 MPMX19_04444 hypothetical protein low > 112
Agrobacterium fabrum C58 0.43 Atu2673 hypothetical protein 0.61 Atu2328 hypothetical protein low > 89
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_00133 radical SAM family enzyme 0.67 CCNA_02688 PuuE-related allantoinase low > 67
Caulobacter crescentus NA1000 0.42 CCNA_00133 radical SAM family enzyme 0.67 CCNA_02688 PuuE-related allantoinase low > 66
Sinorhizobium meliloti 1021 0.41 SMc03831 hypothetical protein 0.62 SM_b20875 hypothetical protein low > 103
Rhizobium sp. OAE497 0.41 ABIE40_RS18200 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.60 ABIE40_RS13840 allantoinase PuuE low > 107

Not shown: 53 genomes with orthologs for PP_0850 only; 0 genomes with orthologs for PP_4286 only