Conservation of cofitness between PP_2214 and PP_2336 in Pseudomonas putida KT2440

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2214 3-hydroxyacyl-CoA dehydrogenase type-2 1.0 PP_2336 aconitate hydratase 1 0.34 6
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS14760 SDR family NAD(P)-dependent oxidoreductase 0.88 PFLU_RS22680 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.42 9
Pseudomonas fluorescens SBW25 0.80 PFLU_RS14760 SDR family NAD(P)-dependent oxidoreductase 0.88 PFLU_RS22680 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 109
Pseudomonas sp. RS175 0.76 PFR28_01881 putative oxidoreductase 0.90 PFR28_02925 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) 0.46 11
Pseudomonas simiae WCS417 0.75 PS417_13860 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.89 PS417_21070 aconitate hydratase — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_2981 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.90 PfGW456L13_4116 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) low > 87
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_1144 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.91 Pf6N2E2_6063 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) — —
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_25690 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.90 AO353_00890 Fe/S-dependent 2-methylisocitrate dehydratase AcnD — —
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_26345 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.90 AO356_20875 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.47 16
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_4785 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.90 Pf1N1B4_3821 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) — —
Pseudomonas stutzeri RCH2 0.68 Psest_2447 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.80 Psest_2319 aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent — —
Pseudomonas sp. S08-1 0.67 OH686_00865 3-hydroxyacyl-CoA dehydrogenase or 17hydroxysteroid dehydrogenase type 10 (HSD10)-like 0.81 OH686_01680 2-methylisocitrate dehydratase, Fe/S-dependent low > 80
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_06131 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family 0.83 H281DRAFT_02981 aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming) low > 103
Paraburkholderia graminis OAS925 0.64 ABIE53_005415 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) 0.83 ABIE53_005043 iron-sulfur-dependent 2-methylisocitrate dehydratase low > 113
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS00745 3-hydroxyacyl-CoA dehydrogenase 0.85 ABZR87_RS16735 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.37 9
Burkholderia phytofirmans PsJN 0.61 BPHYT_RS15890 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.83 BPHYT_RS30145 aconitate hydratase low > 109
Herbaspirillum seropedicae SmR1 0.61 HSERO_RS04630 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.87 HSERO_RS11425 aconitate hydratase — —
Ralstonia solanacearum UW163 0.61 UW163_RS08530 3-hydroxyacyl-CoA dehydrogenase 0.84 UW163_RS23450 Fe/S-dependent 2-methylisocitrate dehydratase AcnD — —
Ralstonia solanacearum GMI1000 0.61 RS_RS12705 3-hydroxyacyl-CoA dehydrogenase 0.86 RS_RS17730 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 80
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS05095 3-hydroxyacyl-CoA dehydrogenase 0.84 RALBFv3_RS22830 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 76
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS02810 3-hydroxyacyl-CoA dehydrogenase 0.85 QEN71_RS31060 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 153
Acidovorax sp. GW101-3H11 0.59 Ac3H11_2606 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) @ 17hydroxysteroid dehydrogenase type 10 (HSD10)-like 0.82 Ac3H11_2323 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS03440 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.84 RR42_RS11270 aconitate hydratase low > 128
Ralstonia solanacearum PSI07 0.58 RPSI07_RS12200 3-hydroxyacyl-CoA dehydrogenase 0.85 RPSI07_RS00390 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 81
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS08630 SDR family NAD(P)-dependent oxidoreductase 0.84 ABZR86_RS08435 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 74
Acinetobacter radioresistens SK82 0.54 MPMX26_01177 putative oxidoreductase 0.80 MPMX26_02481 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) — —
Marinobacter adhaerens HP15 0.53 HP15_1007 3-hydroxyacyl-CoA dehydrogenase type II 0.82 HP15_1930 aconitate hydratase 1 — —
Lysobacter sp. OAE881 0.53 ABIE51_RS13215 SDR family NAD(P)-dependent oxidoreductase 0.82 ABIE51_RS09495 Fe/S-dependent 2-methylisocitrate dehydratase AcnD — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01862 Levodione reductase 0.82 MIT1002_03131 Aconitate hydratase 1 — —
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.2924.1 Short-chain dehydrogenase/reductase SDR 0.84 Xcc-8004.3979.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) 0.55 28
Variovorax sp. SCN45 0.49 GFF2281 Short-chain dehydrogenase/reductase SDR 0.86 GFF270 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) low > 127
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_1000 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.81 B158DRAFT_1345 aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent low > 40
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4075 Short-chain dehydrogenase/reductase SDR 0.88 Psyr_2087 aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming) low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4075 Short-chain dehydrogenase/reductase SDR 0.88 Psyr_2087 aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming) low > 86
Shewanella loihica PV-4 0.29 Shew_1673 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.82 Shew_1822 aconitate hydratase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.29 Sama_1381 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.83 Sama_3296 aconitate hydratase (RefSeq) low > 62
Shewanella sp. ANA-3 0.28 Shewana3_2765 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.83 Shewana3_3827 aconitate hydratase (RefSeq) — —
Shewanella oneidensis MR-1 0.27 SO1683 3-hydroxy-2-methylbutyryl-CoA dehydrogenase IvdG (EC:1.1.1.178) (from data) 0.84 SO0343 acnA aconitate hydratase 1 (NCBI ptt file) 0.36 39

Not shown: 22 genomes with orthologs for PP_2214 only; 10 genomes with orthologs for PP_2336 only